Wall clock time and date at job start Mon Mar 30 2020 03:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47033 * 2 1 4 4 C 1.52999 * 109.46907 * 240.00308 * 2 1 3 5 5 C 1.53000 * 109.47216 * 120.00039 * 2 1 3 6 6 H 1.08997 * 109.78268 * 298.18182 * 5 2 1 7 7 C 1.53237 * 109.62466 * 58.66526 * 5 2 1 8 8 N 1.46906 * 109.36185 * 173.55265 * 7 5 2 9 9 C 1.46897 * 111.26894 * 296.88477 * 8 7 5 10 10 C 1.53235 * 109.34291 * 63.09909 * 9 8 7 11 11 N 1.47078 * 108.52428 * 306.17399 * 10 9 8 12 12 C 1.36941 * 120.88477 * 231.20600 * 11 10 9 13 13 H 1.08000 * 120.00108 * 155.66971 * 12 11 10 14 14 C 1.38810 * 119.99598 * 335.67427 * 12 11 10 15 15 N 1.31623 * 120.00310 * 337.94354 * 14 12 11 16 16 Si 1.86804 * 120.00035 * 157.94350 * 14 12 11 17 17 H 1.48510 * 109.46910 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47324 * 119.99687 * 16 14 12 19 19 H 1.48500 * 109.47208 * 240.00292 * 16 14 12 20 20 H 1.09005 * 109.47220 * 299.99805 * 1 2 3 21 21 H 1.09005 * 109.47170 * 60.00093 * 1 2 3 22 22 H 1.08997 * 109.47222 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47268 * 163.27693 * 3 2 1 24 24 H 1.09002 * 109.47372 * 283.27505 * 3 2 1 25 25 H 1.08997 * 109.47331 * 43.27752 * 3 2 1 26 26 H 1.08998 * 109.47478 * 326.77862 * 4 2 1 27 27 H 1.08995 * 109.47228 * 86.78491 * 4 2 1 28 28 H 1.09001 * 109.46918 * 206.78091 * 4 2 1 29 29 H 1.08996 * 109.49494 * 53.58306 * 7 5 2 30 30 H 1.09001 * 109.49869 * 293.52374 * 7 5 2 31 31 H 1.00901 * 110.99753 * 61.03122 * 8 7 5 32 32 H 1.08999 * 109.49625 * 183.06430 * 9 8 7 33 33 H 1.09000 * 109.49116 * 303.11526 * 9 8 7 34 34 H 1.09001 * 109.63133 * 65.88360 * 10 9 8 35 35 H 1.09003 * 109.63123 * 186.27048 * 10 9 8 36 36 H 0.97000 * 120.00134 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 1.7063 -0.1930 2.1423 7 6 1.5039 -2.1566 1.2697 8 7 2.1181 -2.8901 2.3846 9 6 3.5727 -3.0009 2.2125 10 6 4.1942 -1.6004 2.2309 11 7 3.5103 -0.7726 1.2258 12 6 4.2230 -0.0684 0.2922 13 1 3.7626 0.2041 -0.6459 14 6 5.5373 0.2950 0.5518 15 7 5.9673 0.3669 1.7937 16 14 6.6959 0.6822 -0.8616 17 1 5.9736 0.5284 -2.1500 18 1 7.1859 2.0780 -0.7318 19 1 7.8491 -0.2527 -0.8266 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 3.0890 1.4570 0.2957 24 1 1.9386 1.8637 -1.0002 25 1 1.4557 2.0344 0.7045 26 1 1.3506 -1.5233 -1.5127 27 1 2.1067 -0.0135 -2.0756 28 1 3.0260 -1.1406 -1.0496 29 1 1.7505 -2.6505 0.3298 30 1 0.4217 -2.1390 1.3983 31 1 1.8902 -2.4608 3.2689 32 1 3.9909 -3.5951 3.0250 33 1 3.7905 -3.4834 1.2597 34 1 4.0676 -1.1565 3.2183 35 1 5.2558 -1.6677 1.9930 36 1 6.8859 0.6205 1.9750 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407388799.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:28 Heat of formation + Delta-G solvation = 19.788043 kcal Electronic energy + Delta-G solvation = -15843.313274 eV Core-core repulsion = 13555.858422 eV Total energy + Delta-G solvation = -2287.454852 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.64580 -36.94910 -35.32968 -32.24373 -30.72743 -28.92298 -27.98828 -26.90087 -24.35660 -24.01793 -21.59589 -19.65690 -18.72624 -16.99577 -16.22750 -15.77964 -15.59051 -15.45408 -15.02626 -14.44039 -14.30416 -14.09207 -13.63684 -13.16198 -12.86642 -12.75368 -12.67964 -12.42761 -12.34111 -12.18733 -11.99830 -11.84464 -11.61550 -11.38515 -11.25751 -10.68262 -10.34040 -9.44490 -8.46688 -7.77346 -5.15476 1.43499 1.48361 1.55809 2.53442 3.30056 3.49561 3.60662 4.06646 4.16362 4.28445 4.45563 4.51510 4.56995 4.72702 4.78292 4.85613 4.91995 4.96209 5.05352 5.09203 5.16490 5.23120 5.31148 5.43516 5.45550 5.48865 5.61123 5.76134 5.81425 6.00226 6.16676 6.42068 6.55736 7.19349 7.91779 8.42754 9.26032 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027503 B = 0.015310 C = 0.011291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.829950 B = 1828.455400 C = 2479.176590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.054 4.054 3 C -0.164 4.164 4 C -0.146 4.146 5 C 0.145 3.855 6 H 0.003 0.997 7 C 0.053 3.947 8 N -0.682 5.682 9 C 0.048 3.952 10 C 0.143 3.857 11 N -0.601 5.601 12 C -0.232 4.232 13 H 0.109 0.891 14 C -0.063 4.063 15 N -0.938 5.938 16 Si 0.943 3.057 17 H -0.262 1.262 18 H -0.300 1.300 19 H -0.298 1.298 20 H 0.050 0.950 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.336 0.664 32 H 0.079 0.921 33 H 0.059 0.941 34 H -0.009 1.009 35 H 0.055 0.945 36 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 -3.479 -3.011 10.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.055 4.055 3 C -0.221 4.221 4 C -0.203 4.203 5 C 0.038 3.962 6 H 0.021 0.979 7 C -0.078 4.078 8 N -0.309 5.309 9 C -0.083 4.083 10 C 0.016 3.984 11 N -0.325 5.325 12 C -0.362 4.362 13 H 0.126 0.874 14 C -0.257 4.257 15 N -0.586 5.586 16 Si 0.773 3.227 17 H -0.186 1.186 18 H -0.228 1.228 19 H -0.225 1.225 20 H 0.069 0.931 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.152 0.848 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.009 0.991 35 H 0.073 0.927 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.421 -4.078 -3.259 10.770 hybrid contribution 1.549 1.572 0.014 2.207 sum -7.872 -2.506 -3.245 8.876 Atomic orbital electron populations 1.21886 0.93063 1.02273 1.01702 1.20400 0.95601 0.94933 0.94603 1.22488 1.04222 0.95284 1.00062 1.22235 1.02340 0.99793 0.95935 1.21374 0.84085 0.95380 0.95366 0.97930 1.22514 0.98605 0.92014 0.94633 1.60854 1.10077 1.54500 1.05489 1.22415 0.88226 0.96350 1.01307 1.21283 0.97401 0.89705 0.90013 1.44439 1.00485 1.52105 1.35520 1.20093 0.93745 1.26024 0.96308 0.87426 1.25606 1.00971 1.01952 0.97160 1.70251 1.15837 1.53795 1.18751 0.85537 0.79770 0.76383 0.80971 1.18645 1.22837 1.22494 0.93095 0.91895 0.91364 0.90316 0.93224 0.94725 0.92411 0.93445 0.91481 0.91474 0.89236 0.84770 0.90287 0.92239 0.99124 0.92663 0.94804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 7.88 71.98 0.57 -2.93 16 2 C -0.05 -1.88 0.54 -52.18 -0.03 -1.91 16 3 C -0.16 -6.27 7.90 71.98 0.57 -5.70 16 4 C -0.15 -4.97 6.58 71.98 0.47 -4.50 16 5 C 0.15 5.67 2.33 44.95 0.10 5.77 16 6 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 7 C 0.05 1.76 5.28 86.38 0.46 2.22 16 8 N -0.68 -23.05 6.85 -513.03 -3.52 -26.56 16 9 C 0.05 1.81 6.70 86.38 0.58 2.39 16 10 C 0.14 6.80 5.44 86.35 0.47 7.27 16 11 N -0.60 -28.48 2.80 -674.17 -1.89 -30.37 16 12 C -0.23 -11.83 5.03 84.03 0.42 -11.41 16 13 H 0.11 5.20 3.61 -2.91 -0.01 5.19 16 14 C -0.06 -3.43 4.82 84.86 0.41 -3.02 16 15 N -0.94 -55.29 11.32 21.65 0.25 -55.05 16 16 Si 0.94 44.49 29.61 68.60 2.03 46.52 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 19 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 20 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 21 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 22 H 0.07 1.60 6.54 -2.39 -0.02 1.58 16 23 H 0.08 3.73 4.48 -2.38 -0.01 3.72 16 24 H 0.05 1.71 7.70 -2.39 -0.02 1.69 16 25 H 0.03 1.25 8.03 -2.39 -0.02 1.23 16 26 H 0.06 1.68 7.53 -2.39 -0.02 1.66 16 27 H 0.05 1.53 7.60 -2.39 -0.02 1.51 16 28 H 0.07 2.73 5.08 -2.39 -0.01 2.72 16 29 H 0.07 2.31 6.85 -2.39 -0.02 2.30 16 30 H 0.09 2.50 6.80 -2.39 -0.02 2.48 16 31 H 0.34 10.88 8.83 -89.69 -0.79 10.09 16 32 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 34 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 35 H 0.05 2.98 6.12 -2.39 -0.01 2.97 16 36 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -58.82 260.75 1.16 -57.66 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.27 Total: 19.62 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 4.02 Total: -11.82 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -5.16 Total: -111.98 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -58.82 1.16 -57.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407388799.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.447 kcal (2) G-P(sol) polarization free energy of solvation -58.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds