Wall clock time and date at job start Mon Mar 30 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00195 * 2 1 4 4 H 1.48500 * 109.47190 * 270.00504 * 3 2 1 5 5 H 1.48503 * 109.46637 * 30.00155 * 3 2 1 6 6 H 1.48499 * 109.47256 * 150.00030 * 3 2 1 7 7 C 1.37880 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99848 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46799 * 180.02562 * 9 7 2 11 11 C 1.46873 * 111.00146 * 293.95569 * 10 9 7 12 12 C 1.52740 * 109.67527 * 159.05516 * 11 10 9 13 13 C 1.52797 * 109.91060 * 315.57272 * 12 11 10 14 14 C 1.53071 * 109.53510 * 112.00778 * 13 12 11 15 15 C 1.53066 * 108.93387 * 284.63749 * 14 13 12 16 16 C 1.52806 * 109.57465 * 75.39260 * 15 14 13 17 17 H 1.09002 * 109.40169 * 8.10534 * 16 15 14 18 18 N 1.46903 * 109.40105 * 127.93364 * 16 15 14 19 19 C 1.46670 * 111.01711 * 169.88401 * 10 9 7 20 20 H 0.97005 * 120.00539 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46947 * 60.00747 * 9 7 2 22 22 H 1.08994 * 109.47145 * 300.00257 * 9 7 2 23 23 H 1.08999 * 109.43727 * 38.99148 * 11 10 9 24 24 H 1.08999 * 109.40233 * 279.09876 * 11 10 9 25 25 H 1.09000 * 109.39878 * 195.43377 * 12 11 10 26 26 H 1.09002 * 109.32617 * 75.66123 * 12 11 10 27 27 H 1.09004 * 109.45525 * 351.98962 * 13 12 11 28 28 H 1.09003 * 109.45915 * 232.03209 * 13 12 11 29 29 H 1.08998 * 109.55488 * 164.79979 * 14 13 12 30 30 H 1.08998 * 109.55684 * 44.47448 * 14 13 12 31 31 H 1.09007 * 109.45433 * 315.36346 * 15 14 13 32 32 H 1.08996 * 109.45298 * 195.42734 * 15 14 13 33 33 H 1.00905 * 110.99311 * 300.17188 * 18 16 15 34 34 H 1.00897 * 110.99685 * 64.12390 * 18 16 15 35 35 H 1.08990 * 109.34222 * 80.83643 * 19 10 9 36 36 H 1.09001 * 109.42794 * 321.01388 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 2.9707 -3.6540 -1.2536 12 6 4.2621 -4.4423 -1.0437 13 6 4.9186 -4.0248 0.2715 14 6 4.8552 -5.1864 1.2664 15 6 3.4278 -5.2997 1.8073 16 6 2.5261 -5.9269 0.7449 17 1 3.1365 -6.2759 -0.0880 18 7 1.8017 -7.0637 1.3289 19 6 1.5229 -4.8914 0.2399 20 1 -0.4851 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 3.2126 -2.6370 -1.5621 24 1 2.3736 -4.1356 -2.0279 25 1 4.9459 -4.2433 -1.8688 26 1 4.0334 -5.5075 -1.0120 27 1 4.3911 -3.1645 0.6835 28 1 5.9598 -3.7591 0.0892 29 1 5.5439 -4.9990 2.0903 30 1 5.1295 -6.1134 0.7630 31 1 3.0552 -4.3069 2.0595 32 1 3.4264 -5.9252 2.6999 33 1 2.4429 -7.7650 1.6684 34 1 1.1792 -6.7578 2.0617 35 1 1.0761 -5.2427 -0.6900 36 1 0.7414 -4.7494 0.9864 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575546106.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:03 Heat of formation + Delta-G solvation = -1.917139 kcal Electronic energy + Delta-G solvation = -15198.719307 eV Core-core repulsion = 12910.323248 eV Total energy + Delta-G solvation = -2288.396059 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.85287 -34.96738 -33.83952 -32.41350 -29.86506 -27.96601 -25.57674 -25.13478 -22.23319 -20.80236 -20.17289 -19.43419 -16.30309 -15.71053 -15.31535 -14.47993 -14.30125 -14.15281 -13.78265 -13.21886 -13.01117 -12.68544 -12.13769 -11.94446 -11.59204 -11.11740 -10.88510 -10.76236 -10.67588 -10.52748 -10.36496 -10.13272 -9.96104 -9.82550 -9.39639 -9.16195 -8.45718 -8.38504 -7.16888 -6.02259 -4.03501 3.31377 3.37860 3.41767 4.40928 4.68126 5.10848 5.17548 5.32908 5.37062 5.51485 5.64528 5.69684 5.74524 5.89884 6.02347 6.22458 6.28790 6.30511 6.38715 6.44954 6.57597 6.64653 6.72518 6.82591 6.92040 7.14284 7.31369 7.38901 7.45601 7.64876 7.83517 8.12732 8.25223 8.58212 9.04757 9.60688 11.08459 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037235 B = 0.009195 C = 0.008287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.796748 B = 3044.262499 C = 3377.988812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.529 5.529 11 C 0.058 3.942 12 C -0.120 4.120 13 C -0.114 4.114 14 C -0.107 4.107 15 C -0.144 4.144 16 C 0.087 3.913 17 H 0.082 0.918 18 N -0.850 5.850 19 C 0.063 3.937 20 H 0.261 0.739 21 H -0.011 1.011 22 H 0.028 0.972 23 H 0.084 0.916 24 H 0.018 0.982 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.039 0.961 33 H 0.335 0.665 34 H 0.336 0.664 35 H 0.027 0.973 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.909 -10.045 1.506 12.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.253 5.253 11 C -0.070 4.070 12 C -0.158 4.158 13 C -0.151 4.151 14 C -0.145 4.145 15 C -0.183 4.183 16 C -0.024 4.024 17 H 0.100 0.900 18 N -0.378 5.378 19 C -0.066 4.066 20 H 0.070 0.930 21 H 0.007 0.993 22 H 0.046 0.954 23 H 0.102 0.898 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.045 0.955 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.753 -9.935 1.149 12.067 hybrid contribution 0.261 1.059 0.215 1.111 sum 7.014 -8.876 1.364 11.395 Atomic orbital electron populations 1.69960 1.06055 1.26716 1.51052 1.24989 0.94834 0.99268 0.95540 0.86532 0.79822 0.83261 0.78008 1.20792 1.21320 1.19789 1.21167 0.93461 0.89894 1.49877 0.91797 1.19727 0.90085 0.87346 0.95981 1.61882 1.27617 1.02426 1.33416 1.22033 0.93708 1.00903 0.90359 1.21809 0.97011 0.99591 0.97376 1.21536 0.98720 0.99722 0.95148 1.21578 0.96339 0.98122 0.98425 1.22400 0.95801 1.03339 0.96757 1.21779 0.94123 0.89807 0.96699 0.89988 1.58961 1.24355 1.14385 1.40117 1.21926 0.94943 0.90396 0.99351 0.92968 0.99291 0.95351 0.89766 0.96393 0.93067 0.92451 0.88790 0.94110 0.93241 0.93373 0.89046 0.94213 0.85311 0.85126 0.95521 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.89 8.22 -34.44 -0.28 -14.17 16 8 H 0.06 1.73 7.33 -52.49 -0.38 1.35 16 9 C 0.19 4.97 4.70 -4.97 -0.02 4.95 16 10 N -0.53 -10.98 1.93 -236.61 -0.46 -11.43 16 11 C 0.06 1.13 5.02 -3.97 -0.02 1.11 16 12 C -0.12 -1.91 5.44 -26.97 -0.15 -2.06 16 13 C -0.11 -1.81 5.48 -26.80 -0.15 -1.96 16 14 C -0.11 -1.51 5.64 -26.66 -0.15 -1.66 16 15 C -0.14 -2.14 5.23 -26.80 -0.14 -2.28 16 16 C 0.09 1.32 2.78 -67.93 -0.19 1.13 16 17 H 0.08 1.27 4.70 -51.93 -0.24 1.03 16 18 N -0.85 -11.12 9.10 -4.86 -0.04 -11.17 16 19 C 0.06 1.16 4.78 -4.07 -0.02 1.14 16 20 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 21 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 22 H 0.03 0.78 7.81 -51.93 -0.41 0.38 16 23 H 0.08 1.80 6.57 -51.93 -0.34 1.46 16 24 H 0.02 0.34 7.69 -51.93 -0.40 -0.05 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.87 4.70 -51.93 -0.24 0.62 16 27 H 0.09 1.80 6.58 -51.93 -0.34 1.46 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.63 7.49 -51.93 -0.39 0.24 16 31 H 0.09 1.65 6.58 -51.92 -0.34 1.31 16 32 H 0.04 0.53 7.82 -51.93 -0.41 0.12 16 33 H 0.33 3.70 8.98 -39.29 -0.35 3.35 16 34 H 0.34 4.19 8.89 -39.29 -0.35 3.85 16 35 H 0.03 0.51 7.69 -51.93 -0.40 0.11 16 36 H 0.06 1.20 7.57 -51.93 -0.39 0.81 16 LS Contribution 269.19 15.07 4.06 4.06 Total: -1.00 -28.31 269.19 -7.76 -36.08 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.82 Total: 4.19 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -1.22 Total: -12.35 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.24 Total: -48.48 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.31 -7.76 -36.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575546106.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.159 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds