Wall clock time and date at job start Mon Mar 30 2020 02:30:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52998 * 109.46925 * 2 1
4 4 H 1.09005 * 109.62807 * 59.91459 * 3 2 1
5 5 C 1.54242 * 109.79297 * 299.42645 * 3 2 1
6 6 C 1.45541 * 112.40871 * 160.21175 * 5 3 2
7 7 C 1.54235 * 112.41102 * 61.93448 * 6 5 3
8 8 C 1.50470 * 108.52127 * 280.01558 * 7 6 5
9 9 C 1.54064 * 112.49515 * 94.15091 * 8 7 6
10 10 C 1.50474 * 109.63205 * 180.30164 * 3 2 1
11 11 O 1.42899 * 108.87770 * 93.27617 * 10 3 2
12 12 C 1.50702 * 108.87647 * 334.83429 * 10 3 2
13 13 H 1.08000 * 119.99467 * 351.53982 * 12 10 3
14 14 C 1.37875 * 120.00201 * 171.53626 * 12 10 3
15 15 N 1.31510 * 119.99606 * 359.97438 * 14 12 10
16 16 Si 1.86796 * 120.00020 * 180.02562 * 14 12 10
17 17 H 1.48508 * 109.46981 * 89.99692 * 16 14 12
18 18 H 1.48501 * 109.47002 * 209.99629 * 16 14 12
19 19 H 1.48502 * 109.47134 * 329.99919 * 16 14 12
20 20 H 1.08996 * 109.47505 * 60.00087 * 1 2 3
21 21 H 1.09003 * 109.46897 * 179.97438 * 1 2 3
22 22 H 1.09000 * 109.47021 * 299.99990 * 1 2 3
23 23 H 1.09007 * 109.47246 * 240.00307 * 2 1 3
24 24 H 1.08996 * 109.47505 * 119.99913 * 2 1 3
25 25 H 1.09002 * 108.89625 * 280.96639 * 5 3 2
26 26 H 1.08995 * 108.89610 * 39.45204 * 5 3 2
27 27 H 1.09003 * 108.89442 * 182.68827 * 6 5 3
28 28 H 1.08996 * 108.89611 * 301.27243 * 6 5 3
29 29 H 1.09008 * 109.62730 * 39.72436 * 7 6 5
30 30 H 1.09008 * 109.63086 * 160.30002 * 7 6 5
31 31 H 1.09001 * 108.87937 * 333.36987 * 8 7 6
32 32 H 1.09003 * 108.87417 * 214.92675 * 8 7 6
33 33 H 1.09008 * 108.81098 * 197.42332 * 9 8 7
34 34 H 1.08995 * 108.81457 * 79.14568 * 9 8 7
35 35 H 0.96702 * 114.00346 * 182.97916 * 11 10 3
36 36 H 0.97007 * 119.99904 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6767 1.9593 0.8884
5 6 1.5417 2.1726 -1.2641
6 6 1.5841 3.6204 -1.1215
7 6 3.0163 4.1476 -0.8982
8 6 3.3792 3.9472 0.5482
9 6 4.1349 2.6263 0.7888
10 6 3.5446 1.4468 -0.0075
11 8 4.0001 1.5277 -1.3595
12 6 4.0389 0.1565 0.5942
13 1 3.3424 -0.5211 1.0656
14 6 5.3801 -0.1589 0.5429
15 7 6.2280 0.6660 -0.0316
16 14 5.9925 -1.7586 1.2880
17 1 5.9556 -2.8297 0.2599
18 1 7.3868 -1.5798 1.7667
19 1 5.1219 -2.1382 2.4296
20 1 -0.3634 0.5138 -0.8899
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8900
23 1 1.8934 -0.5138 -0.8901
24 1 1.8934 -0.5138 0.8899
25 1 2.1668 1.8826 -2.1086
26 1 0.5150 1.8677 -1.4663
27 1 1.1770 4.0760 -2.0243
28 1 0.9664 3.9096 -0.2714
29 1 3.7122 3.5959 -1.5303
30 1 3.0580 5.2091 -1.1426
31 1 2.4664 3.9448 1.1439
32 1 4.0074 4.7769 0.8724
33 1 4.0957 2.3875 1.8516
34 1 5.1771 2.7597 0.4989
35 1 4.9617 1.4898 -1.4536
36 1 7.1716 0.4439 -0.0681
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000606255754.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:30:31
Heat of formation + Delta-G solvation = -82.077380 kcal
Electronic energy + Delta-G solvation = -15802.741660 eV
Core-core repulsion = 13478.576841 eV
Total energy + Delta-G solvation = -2324.164819 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 212.152 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.54235 -36.16407 -35.24351 -33.86526 -32.32235 -30.21909 -27.43805 -25.93096
-23.79830 -22.53352 -20.81002 -20.02101 -18.62351 -17.22133 -16.21843 -15.89774
-15.60574 -15.32142 -14.56730 -14.37654 -14.19685 -13.78886 -13.42994 -13.17771
-13.06170 -12.72779 -12.55029 -12.47994 -12.29328 -11.92717 -11.78115 -11.33094
-11.25332 -11.02493 -10.93043 -10.74906 -10.58778 -10.31108 -9.58023 -8.08711
-6.21633 1.39125 1.42049 1.49660 2.43033 3.14047 4.02046 4.06941
4.20416 4.40318 4.46411 4.51073 4.59858 4.64387 4.76806 4.86450
4.97355 5.01534 5.10809 5.15419 5.25455 5.30766 5.35780 5.40952
5.55062 5.60548 5.66278 5.68575 5.72698 5.81620 5.84849 6.09636
6.22445 6.41316 6.86277 7.48848 7.77258 8.93292
Molecular weight = 212.15amu
Principal moments of inertia in cm(-1)
A = 0.030710 B = 0.013736 C = 0.010669
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 911.526162 B = 2037.906547 C = 2623.766726
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.105 4.105
3 C -0.058 4.058
4 H 0.056 0.944
5 C -0.110 4.110
6 C -0.102 4.102
7 C -0.121 4.121
8 C -0.109 4.109
9 C -0.120 4.120
10 C 0.249 3.751
11 O -0.588 6.588
12 C -0.555 4.555
13 H 0.071 0.929
14 C 0.023 3.977
15 N -0.920 5.920
16 Si 0.947 3.053
17 H -0.281 1.281
18 H -0.286 1.286
19 H -0.271 1.271
20 H 0.060 0.940
21 H 0.055 0.945
22 H 0.055 0.945
23 H 0.037 0.963
24 H 0.056 0.944
25 H 0.056 0.944
26 H 0.063 0.937
27 H 0.063 0.937
28 H 0.058 0.942
29 H 0.063 0.937
30 H 0.063 0.937
31 H 0.055 0.945
32 H 0.047 0.953
33 H 0.025 0.975
34 H 0.043 0.957
35 H 0.367 0.633
36 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.836 3.432 -0.205 8.557
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.143 4.143
3 C -0.077 4.077
4 H 0.074 0.926
5 C -0.147 4.147
6 C -0.139 4.139
7 C -0.158 4.158
8 C -0.147 4.147
9 C -0.159 4.159
10 C 0.210 3.790
11 O -0.399 6.399
12 C -0.593 4.593
13 H 0.089 0.911
14 C -0.175 4.175
15 N -0.563 5.563
16 Si 0.774 3.226
17 H -0.207 1.207
18 H -0.212 1.212
19 H -0.196 1.196
20 H 0.079 0.921
21 H 0.074 0.926
22 H 0.074 0.926
23 H 0.056 0.944
24 H 0.075 0.925
25 H 0.074 0.926
26 H 0.081 0.919
27 H 0.082 0.918
28 H 0.076 0.924
29 H 0.081 0.919
30 H 0.081 0.919
31 H 0.074 0.926
32 H 0.066 0.934
33 H 0.044 0.956
34 H 0.061 0.939
35 H 0.219 0.781
36 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -8.294 3.488 -0.350 9.004
hybrid contribution 1.658 -1.015 0.644 2.048
sum -6.636 2.473 0.294 7.088
Atomic orbital electron populations
1.21886 0.95239 1.01447 1.01858 1.21574 0.95066 0.96715 1.00900
1.20785 0.94166 0.95437 0.97275 0.92584 1.20348 1.00031 0.95553
0.98730 1.20356 0.96246 0.95956 1.01332 1.21403 0.97815 0.99852
0.96777 1.21330 0.99492 0.96569 0.97295 1.22398 0.99667 0.95370
0.98444 1.18398 0.90611 0.90529 0.79444 1.86135 1.28093 1.96259
1.29365 1.22710 0.93297 1.06627 1.36691 0.91125 1.25660 0.97171
0.99266 0.95418 1.69536 1.03382 1.37316 1.46049 0.85731 0.77359
0.80784 0.78720 1.20721 1.21227 1.19591 0.92100 0.92558 0.92562
0.94381 0.92548 0.92578 0.91877 0.91837 0.92383 0.91858 0.91881
0.92615 0.93437 0.95605 0.93866 0.78123 0.92682
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.41 9.64 71.98 0.69 -3.71 16
2 C -0.11 -4.14 4.38 30.59 0.13 -4.01 16
3 C -0.06 -2.38 1.75 -11.19 -0.02 -2.40 16
4 H 0.06 2.24 6.98 -2.38 -0.02 2.22 16
5 C -0.11 -4.00 4.55 28.74 0.13 -3.86 16
6 C -0.10 -3.27 5.26 28.73 0.15 -3.12 16
7 C -0.12 -4.30 5.61 30.19 0.17 -4.13 16
8 C -0.11 -4.13 5.31 30.14 0.16 -3.97 16
9 C -0.12 -5.63 4.56 31.31 0.14 -5.49 16
10 C 0.25 12.01 0.54 -12.00 -0.01 12.01 16
11 O -0.59 -29.99 8.35 -148.98 -1.24 -31.23 16
12 C -0.56 -29.39 7.19 25.60 0.18 -29.21 16
13 H 0.07 3.69 4.87 -2.91 -0.01 3.68 16
14 C 0.02 1.22 5.22 84.65 0.44 1.66 16
15 N -0.92 -50.31 9.79 21.45 0.21 -50.10 16
16 Si 0.95 43.18 29.54 68.60 2.03 45.21 16
17 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16
18 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16
19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16
20 H 0.06 1.69 6.09 -2.39 -0.01 1.68 16
21 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16
22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16
23 H 0.04 1.64 8.12 -2.38 -0.02 1.62 16
24 H 0.06 2.38 5.61 -2.39 -0.01 2.36 16
25 H 0.06 2.36 6.22 -2.39 -0.01 2.34 16
26 H 0.06 2.01 5.69 -2.39 -0.01 2.00 16
27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16
28 H 0.06 1.71 7.46 -2.39 -0.02 1.69 16
29 H 0.06 2.63 5.71 -2.38 -0.01 2.62 16
30 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16
31 H 0.06 1.95 6.63 -2.39 -0.02 1.93 16
32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
33 H 0.03 1.24 7.97 -2.38 -0.02 1.22 16
34 H 0.04 2.24 6.87 -2.39 -0.02 2.22 16
35 H 0.37 20.14 6.42 -74.06 -0.48 19.66 16
36 H 0.26 13.89 8.31 -92.70 -0.77 13.12 16
Total: -1.00 -55.08 256.67 3.76 -51.31
By element:
Atomic # 1 Polarization: 30.46 SS G_CDS: 0.59 Total: 31.05 kcal
Atomic # 6 Polarization: -48.42 SS G_CDS: 2.18 Total: -46.23 kcal
Atomic # 7 Polarization: -50.31 SS G_CDS: 0.21 Total: -50.10 kcal
Atomic # 8 Polarization: -29.99 SS G_CDS: -1.24 Total: -31.23 kcal
Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal
Total: -55.08 3.76 -51.31 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000606255754.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.765 kcal
(2) G-P(sol) polarization free energy of solvation -55.076 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.841 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.313 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.077 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds