Wall clock time and date at job start Mon Mar 30 2020 02:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46925 * 2 1 4 4 H 1.09005 * 109.62807 * 59.91459 * 3 2 1 5 5 C 1.54242 * 109.79297 * 299.42645 * 3 2 1 6 6 C 1.45541 * 112.40871 * 160.21175 * 5 3 2 7 7 C 1.54235 * 112.41102 * 61.93448 * 6 5 3 8 8 C 1.50470 * 108.52127 * 280.01558 * 7 6 5 9 9 C 1.54064 * 112.49515 * 94.15091 * 8 7 6 10 10 C 1.50474 * 109.63205 * 180.30164 * 3 2 1 11 11 O 1.42899 * 108.87770 * 93.27617 * 10 3 2 12 12 C 1.50702 * 108.87647 * 334.83429 * 10 3 2 13 13 H 1.08000 * 119.99467 * 351.53982 * 12 10 3 14 14 C 1.37875 * 120.00201 * 171.53626 * 12 10 3 15 15 N 1.31510 * 119.99606 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00020 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.46981 * 89.99692 * 16 14 12 18 18 H 1.48501 * 109.47002 * 209.99629 * 16 14 12 19 19 H 1.48502 * 109.47134 * 329.99919 * 16 14 12 20 20 H 1.08996 * 109.47505 * 60.00087 * 1 2 3 21 21 H 1.09003 * 109.46897 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47021 * 299.99990 * 1 2 3 23 23 H 1.09007 * 109.47246 * 240.00307 * 2 1 3 24 24 H 1.08996 * 109.47505 * 119.99913 * 2 1 3 25 25 H 1.09002 * 108.89625 * 280.96639 * 5 3 2 26 26 H 1.08995 * 108.89610 * 39.45204 * 5 3 2 27 27 H 1.09003 * 108.89442 * 182.68827 * 6 5 3 28 28 H 1.08996 * 108.89611 * 301.27243 * 6 5 3 29 29 H 1.09008 * 109.62730 * 39.72436 * 7 6 5 30 30 H 1.09008 * 109.63086 * 160.30002 * 7 6 5 31 31 H 1.09001 * 108.87937 * 333.36987 * 8 7 6 32 32 H 1.09003 * 108.87417 * 214.92675 * 8 7 6 33 33 H 1.09008 * 108.81098 * 197.42332 * 9 8 7 34 34 H 1.08995 * 108.81457 * 79.14568 * 9 8 7 35 35 H 0.96702 * 114.00346 * 182.97916 * 11 10 3 36 36 H 0.97007 * 119.99904 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6767 1.9593 0.8884 5 6 1.5417 2.1726 -1.2641 6 6 1.5841 3.6204 -1.1215 7 6 3.0163 4.1476 -0.8982 8 6 3.3792 3.9472 0.5482 9 6 4.1349 2.6263 0.7888 10 6 3.5446 1.4468 -0.0075 11 8 4.0001 1.5277 -1.3595 12 6 4.0389 0.1565 0.5942 13 1 3.3424 -0.5211 1.0656 14 6 5.3801 -0.1589 0.5429 15 7 6.2280 0.6660 -0.0316 16 14 5.9925 -1.7586 1.2880 17 1 5.9556 -2.8297 0.2599 18 1 7.3868 -1.5798 1.7667 19 1 5.1219 -2.1382 2.4296 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 2.1668 1.8826 -2.1086 26 1 0.5150 1.8677 -1.4663 27 1 1.1770 4.0760 -2.0243 28 1 0.9664 3.9096 -0.2714 29 1 3.7122 3.5959 -1.5303 30 1 3.0580 5.2091 -1.1426 31 1 2.4664 3.9448 1.1439 32 1 4.0074 4.7769 0.8724 33 1 4.0957 2.3875 1.8516 34 1 5.1771 2.7597 0.4989 35 1 4.9617 1.4898 -1.4536 36 1 7.1716 0.4439 -0.0681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606255754.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:31 Heat of formation + Delta-G solvation = -82.077380 kcal Electronic energy + Delta-G solvation = -15802.741660 eV Core-core repulsion = 13478.576841 eV Total energy + Delta-G solvation = -2324.164819 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.54235 -36.16407 -35.24351 -33.86526 -32.32235 -30.21909 -27.43805 -25.93096 -23.79830 -22.53352 -20.81002 -20.02101 -18.62351 -17.22133 -16.21843 -15.89774 -15.60574 -15.32142 -14.56730 -14.37654 -14.19685 -13.78886 -13.42994 -13.17771 -13.06170 -12.72779 -12.55029 -12.47994 -12.29328 -11.92717 -11.78115 -11.33094 -11.25332 -11.02493 -10.93043 -10.74906 -10.58778 -10.31108 -9.58023 -8.08711 -6.21633 1.39125 1.42049 1.49660 2.43033 3.14047 4.02046 4.06941 4.20416 4.40318 4.46411 4.51073 4.59858 4.64387 4.76806 4.86450 4.97355 5.01534 5.10809 5.15419 5.25455 5.30766 5.35780 5.40952 5.55062 5.60548 5.66278 5.68575 5.72698 5.81620 5.84849 6.09636 6.22445 6.41316 6.86277 7.48848 7.77258 8.93292 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.030710 B = 0.013736 C = 0.010669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.526162 B = 2037.906547 C = 2623.766726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.058 4.058 4 H 0.056 0.944 5 C -0.110 4.110 6 C -0.102 4.102 7 C -0.121 4.121 8 C -0.109 4.109 9 C -0.120 4.120 10 C 0.249 3.751 11 O -0.588 6.588 12 C -0.555 4.555 13 H 0.071 0.929 14 C 0.023 3.977 15 N -0.920 5.920 16 Si 0.947 3.053 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.271 1.271 20 H 0.060 0.940 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.037 0.963 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.025 0.975 34 H 0.043 0.957 35 H 0.367 0.633 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.836 3.432 -0.205 8.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.077 4.077 4 H 0.074 0.926 5 C -0.147 4.147 6 C -0.139 4.139 7 C -0.158 4.158 8 C -0.147 4.147 9 C -0.159 4.159 10 C 0.210 3.790 11 O -0.399 6.399 12 C -0.593 4.593 13 H 0.089 0.911 14 C -0.175 4.175 15 N -0.563 5.563 16 Si 0.774 3.226 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.196 1.196 20 H 0.079 0.921 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.219 0.781 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.294 3.488 -0.350 9.004 hybrid contribution 1.658 -1.015 0.644 2.048 sum -6.636 2.473 0.294 7.088 Atomic orbital electron populations 1.21886 0.95239 1.01447 1.01858 1.21574 0.95066 0.96715 1.00900 1.20785 0.94166 0.95437 0.97275 0.92584 1.20348 1.00031 0.95553 0.98730 1.20356 0.96246 0.95956 1.01332 1.21403 0.97815 0.99852 0.96777 1.21330 0.99492 0.96569 0.97295 1.22398 0.99667 0.95370 0.98444 1.18398 0.90611 0.90529 0.79444 1.86135 1.28093 1.96259 1.29365 1.22710 0.93297 1.06627 1.36691 0.91125 1.25660 0.97171 0.99266 0.95418 1.69536 1.03382 1.37316 1.46049 0.85731 0.77359 0.80784 0.78720 1.20721 1.21227 1.19591 0.92100 0.92558 0.92562 0.94381 0.92548 0.92578 0.91877 0.91837 0.92383 0.91858 0.91881 0.92615 0.93437 0.95605 0.93866 0.78123 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.41 9.64 71.98 0.69 -3.71 16 2 C -0.11 -4.14 4.38 30.59 0.13 -4.01 16 3 C -0.06 -2.38 1.75 -11.19 -0.02 -2.40 16 4 H 0.06 2.24 6.98 -2.38 -0.02 2.22 16 5 C -0.11 -4.00 4.55 28.74 0.13 -3.86 16 6 C -0.10 -3.27 5.26 28.73 0.15 -3.12 16 7 C -0.12 -4.30 5.61 30.19 0.17 -4.13 16 8 C -0.11 -4.13 5.31 30.14 0.16 -3.97 16 9 C -0.12 -5.63 4.56 31.31 0.14 -5.49 16 10 C 0.25 12.01 0.54 -12.00 -0.01 12.01 16 11 O -0.59 -29.99 8.35 -148.98 -1.24 -31.23 16 12 C -0.56 -29.39 7.19 25.60 0.18 -29.21 16 13 H 0.07 3.69 4.87 -2.91 -0.01 3.68 16 14 C 0.02 1.22 5.22 84.65 0.44 1.66 16 15 N -0.92 -50.31 9.79 21.45 0.21 -50.10 16 16 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 18 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H 0.06 1.69 6.09 -2.39 -0.01 1.68 16 21 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.04 1.64 8.12 -2.38 -0.02 1.62 16 24 H 0.06 2.38 5.61 -2.39 -0.01 2.36 16 25 H 0.06 2.36 6.22 -2.39 -0.01 2.34 16 26 H 0.06 2.01 5.69 -2.39 -0.01 2.00 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.71 7.46 -2.39 -0.02 1.69 16 29 H 0.06 2.63 5.71 -2.38 -0.01 2.62 16 30 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.06 1.95 6.63 -2.39 -0.02 1.93 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.03 1.24 7.97 -2.38 -0.02 1.22 16 34 H 0.04 2.24 6.87 -2.39 -0.02 2.22 16 35 H 0.37 20.14 6.42 -74.06 -0.48 19.66 16 36 H 0.26 13.89 8.31 -92.70 -0.77 13.12 16 Total: -1.00 -55.08 256.67 3.76 -51.31 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.59 Total: 31.05 kcal Atomic # 6 Polarization: -48.42 SS G_CDS: 2.18 Total: -46.23 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.21 Total: -50.10 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.24 Total: -31.23 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -55.08 3.76 -51.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255754.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.765 kcal (2) G-P(sol) polarization free energy of solvation -55.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds