Wall clock time and date at job start Mon Mar 30 2020 02:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46605 * 2 1 4 4 H 1.09003 * 108.85251 * 296.71893 * 3 2 1 5 5 C 1.54063 * 108.80184 * 55.23590 * 3 2 1 6 6 C 1.54065 * 112.81576 * 162.43642 * 5 3 2 7 7 C 1.50330 * 112.43384 * 41.69266 * 6 5 3 8 8 C 1.54240 * 108.60019 * 265.76428 * 7 6 5 9 9 C 1.45537 * 112.32541 * 80.06221 * 8 7 6 10 10 C 1.50479 * 108.87700 * 178.16510 * 3 2 1 11 11 O 1.42903 * 109.62497 * 264.87577 * 10 3 2 12 12 C 1.50697 * 109.62846 * 25.45243 * 10 3 2 13 13 H 1.08002 * 119.99863 * 4.58832 * 12 10 3 14 14 C 1.37877 * 120.00075 * 184.57957 * 12 10 3 15 15 N 1.31508 * 119.99760 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00136 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46844 * 90.00186 * 16 14 12 18 18 H 1.48493 * 109.47172 * 210.00158 * 16 14 12 19 19 H 1.48499 * 109.47119 * 330.00358 * 16 14 12 20 20 H 1.09007 * 109.46623 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47230 * 299.99915 * 1 2 3 22 22 H 1.08994 * 109.47240 * 60.00787 * 1 2 3 23 23 H 1.08993 * 109.47230 * 240.00085 * 2 1 3 24 24 H 1.08994 * 109.47240 * 119.99213 * 2 1 3 25 25 H 1.09001 * 108.81281 * 283.29887 * 5 3 2 26 26 H 1.08994 * 108.81478 * 41.68717 * 5 3 2 27 27 H 1.09008 * 108.87729 * 162.49394 * 6 5 3 28 28 H 1.08996 * 108.87862 * 280.93782 * 6 5 3 29 29 H 1.09006 * 109.48897 * 146.08441 * 7 6 5 30 30 H 1.09004 * 109.69094 * 25.56430 * 7 6 5 31 31 H 1.08995 * 108.89304 * 319.35064 * 8 7 6 32 32 H 1.09004 * 108.89269 * 200.75945 * 8 7 6 33 33 H 1.08998 * 108.90348 * 58.86372 * 9 8 7 34 34 H 1.09002 * 108.89437 * 177.45786 * 9 8 7 35 35 H 0.96694 * 113.99989 * 180.96859 * 11 10 3 36 36 H 0.97000 * 119.99903 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.7200 1.9292 -0.9214 5 6 1.4213 2.1878 1.1981 6 6 2.1751 3.4850 1.5486 7 6 2.5751 4.2641 0.3267 8 6 4.0166 3.8716 -0.0569 9 6 4.0714 2.6138 -0.7869 10 6 3.5439 1.4273 0.0456 11 8 3.9844 1.5570 1.3988 12 6 4.0549 0.1342 -0.5355 13 1 3.3638 -0.5730 -0.9698 14 6 5.4047 -0.1460 -0.5129 15 7 6.2462 0.7151 0.0162 16 14 6.0383 -1.7486 -1.2338 17 1 6.3557 -1.5533 -2.6713 18 1 7.2646 -2.1670 -0.5085 19 1 4.9981 -2.7992 -1.0948 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 0.3865 2.4355 0.9618 26 1 1.4351 1.5296 2.0667 27 1 1.5333 4.1086 2.1711 28 1 3.0715 3.2303 2.1138 29 1 2.5319 5.3311 0.5455 30 1 1.9001 4.0287 -0.4962 31 1 4.6107 3.7785 0.8521 32 1 4.4433 4.6591 -0.6781 33 1 3.4709 2.7044 -1.6921 34 1 5.1053 2.4137 -1.0682 35 1 4.9460 1.5695 1.5000 36 1 7.1958 0.5179 0.0325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606255758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:36 Heat of formation + Delta-G solvation = -69.089539 kcal Electronic energy + Delta-G solvation = -15824.586428 eV Core-core repulsion = 13500.984804 eV Total energy + Delta-G solvation = -2323.601624 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.82606 -34.06601 -33.95771 -31.92897 -30.54117 -28.61184 -25.75878 -24.07781 -22.29601 -21.03600 -19.09131 -18.03339 -16.72591 -15.29314 -14.48055 -14.14102 -14.05665 -13.71889 -13.13305 -12.67918 -12.52089 -12.09329 -11.86269 -11.43840 -11.32737 -10.94959 -10.84321 -10.70682 -10.41567 -10.27211 -9.89824 -9.72592 -9.71650 -9.51726 -9.36689 -9.09161 -8.67441 -8.39821 -7.69282 -6.08308 -4.16012 3.26549 3.34243 3.37438 4.38486 5.17512 5.63969 5.67110 5.68706 5.85701 5.93059 6.03135 6.16940 6.25219 6.35156 6.39527 6.50540 6.52811 6.60862 6.62486 6.78117 6.87236 6.97051 7.02571 7.15335 7.17227 7.33841 7.35171 7.38921 7.49745 7.77591 7.86790 8.08153 8.35724 8.87273 9.52617 9.77453 10.96207 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029937 B = 0.014087 C = 0.010709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.080037 B = 1987.125921 C = 2614.001029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 C -0.063 4.063 4 H 0.051 0.949 5 C -0.088 4.088 6 C -0.117 4.117 7 C -0.112 4.112 8 C -0.101 4.101 9 C -0.139 4.139 10 C 0.264 3.736 11 O -0.581 6.581 12 C -0.535 4.535 13 H 0.073 0.927 14 C 0.067 3.933 15 N -0.899 5.899 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.040 0.960 21 H 0.048 0.952 22 H 0.043 0.957 23 H 0.072 0.928 24 H 0.062 0.938 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.030 0.970 28 H 0.087 0.913 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.030 0.970 34 H 0.078 0.922 35 H 0.376 0.624 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.842 2.924 0.357 6.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.081 4.081 4 H 0.070 0.930 5 C -0.126 4.126 6 C -0.154 4.154 7 C -0.150 4.150 8 C -0.138 4.138 9 C -0.177 4.177 10 C 0.225 3.775 11 O -0.391 6.391 12 C -0.573 4.573 13 H 0.091 0.909 14 C -0.133 4.133 15 N -0.541 5.541 16 Si 0.721 3.279 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 H 0.059 0.941 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.227 0.773 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.299 2.950 0.507 6.974 hybrid contribution 1.080 -0.842 -0.665 1.523 sum -5.218 2.108 -0.158 5.630 Atomic orbital electron populations 1.21965 0.98605 1.00020 1.00733 1.21783 0.92179 0.97895 1.02908 1.20911 0.96449 0.94332 0.96429 0.93049 1.21648 0.96315 0.96056 0.98558 1.21373 1.01277 0.95234 0.97498 1.21287 0.97738 0.97593 0.98352 1.20371 0.95382 0.97512 1.00560 1.21061 1.03399 0.95122 0.98129 1.18192 0.88091 0.91099 0.80141 1.86155 1.28501 1.96099 1.28342 1.22232 0.92490 1.04400 1.38155 0.90931 1.25010 0.96905 0.96626 0.94783 1.69525 1.03178 1.35279 1.46128 0.86592 0.78376 0.83988 0.78987 1.20813 1.21290 1.19905 0.94084 0.93331 0.93811 0.90968 0.91958 0.94863 0.92861 0.95092 0.89499 0.93971 0.92925 0.92155 0.95149 0.95155 0.90392 0.77271 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.47 37.16 0.35 -2.21 16 2 C -0.11 -2.22 4.22 -26.73 -0.11 -2.33 16 3 C -0.06 -1.32 1.65 -91.32 -0.15 -1.47 16 4 H 0.05 1.07 6.63 -51.93 -0.34 0.73 16 5 C -0.09 -1.69 3.66 -25.62 -0.09 -1.78 16 6 C -0.12 -2.17 5.29 -27.51 -0.15 -2.32 16 7 C -0.11 -2.04 5.59 -27.41 -0.15 -2.19 16 8 C -0.10 -2.05 5.18 -29.60 -0.15 -2.20 16 9 C -0.14 -3.20 4.39 -29.60 -0.13 -3.33 16 10 C 0.26 6.29 0.55 -92.38 -0.05 6.24 16 11 O -0.58 -14.38 8.54 -35.23 -0.30 -14.68 16 12 C -0.53 -13.92 7.40 -34.44 -0.25 -14.17 16 13 H 0.07 1.87 4.84 -52.49 -0.25 1.61 16 14 C 0.07 1.77 5.09 -17.82 -0.09 1.67 16 15 N -0.90 -23.91 9.91 55.43 0.55 -23.36 16 16 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 21 H 0.05 0.76 6.68 -51.93 -0.35 0.41 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 1.52 5.72 -51.93 -0.30 1.23 16 24 H 0.06 1.35 8.09 -51.93 -0.42 0.93 16 25 H 0.03 0.57 7.31 -51.93 -0.38 0.19 16 26 H 0.05 1.06 7.98 -51.93 -0.41 0.65 16 27 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.09 1.79 5.32 -51.93 -0.28 1.51 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.95 6.97 -51.93 -0.36 0.59 16 31 H 0.06 1.29 6.72 -51.93 -0.35 0.94 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.03 0.68 7.47 -51.93 -0.39 0.29 16 34 H 0.08 2.01 6.32 -51.93 -0.33 1.68 16 35 H 0.38 9.83 6.76 45.56 0.31 10.14 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 257.62 15.07 3.88 3.88 Total: -1.00 -25.67 257.62 -6.97 -32.64 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.10 Total: 9.90 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -0.98 Total: -24.09 kcal Atomic # 7 Polarization: -23.91 SS G_CDS: 0.55 Total: -23.36 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -0.30 Total: -14.68 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.67 -6.97 -32.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.448 kcal (2) G-P(sol) polarization free energy of solvation -25.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds