Wall clock time and date at job start Mon Mar 30 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46605 * 2 1 4 4 H 1.09003 * 108.85251 * 296.71893 * 3 2 1 5 5 C 1.54063 * 108.80184 * 55.23590 * 3 2 1 6 6 C 1.54065 * 112.81576 * 162.43642 * 5 3 2 7 7 C 1.50330 * 112.43384 * 41.69266 * 6 5 3 8 8 C 1.54240 * 108.60019 * 265.76428 * 7 6 5 9 9 C 1.45537 * 112.32541 * 80.06221 * 8 7 6 10 10 C 1.50479 * 108.87700 * 178.16510 * 3 2 1 11 11 O 1.42903 * 109.62497 * 264.87577 * 10 3 2 12 12 C 1.50697 * 109.62846 * 25.45243 * 10 3 2 13 13 H 1.08002 * 119.99863 * 4.58832 * 12 10 3 14 14 C 1.37877 * 120.00075 * 184.57957 * 12 10 3 15 15 N 1.31508 * 119.99760 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00136 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46844 * 90.00186 * 16 14 12 18 18 H 1.48493 * 109.47172 * 210.00158 * 16 14 12 19 19 H 1.48499 * 109.47119 * 330.00358 * 16 14 12 20 20 H 1.09007 * 109.46623 * 180.02562 * 1 2 3 21 21 H 1.08993 * 109.47230 * 299.99915 * 1 2 3 22 22 H 1.08994 * 109.47240 * 60.00787 * 1 2 3 23 23 H 1.08993 * 109.47230 * 240.00085 * 2 1 3 24 24 H 1.08994 * 109.47240 * 119.99213 * 2 1 3 25 25 H 1.09001 * 108.81281 * 283.29887 * 5 3 2 26 26 H 1.08994 * 108.81478 * 41.68717 * 5 3 2 27 27 H 1.09008 * 108.87729 * 162.49394 * 6 5 3 28 28 H 1.08996 * 108.87862 * 280.93782 * 6 5 3 29 29 H 1.09006 * 109.48897 * 146.08441 * 7 6 5 30 30 H 1.09004 * 109.69094 * 25.56430 * 7 6 5 31 31 H 1.08995 * 108.89304 * 319.35064 * 8 7 6 32 32 H 1.09004 * 108.89269 * 200.75945 * 8 7 6 33 33 H 1.08998 * 108.90348 * 58.86372 * 9 8 7 34 34 H 1.09002 * 108.89437 * 177.45786 * 9 8 7 35 35 H 0.96694 * 113.99989 * 180.96859 * 11 10 3 36 36 H 0.97000 * 119.99903 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.7200 1.9292 -0.9214 5 6 1.4213 2.1878 1.1981 6 6 2.1751 3.4850 1.5486 7 6 2.5751 4.2641 0.3267 8 6 4.0166 3.8716 -0.0569 9 6 4.0714 2.6138 -0.7869 10 6 3.5439 1.4273 0.0456 11 8 3.9844 1.5570 1.3988 12 6 4.0549 0.1342 -0.5355 13 1 3.3638 -0.5730 -0.9698 14 6 5.4047 -0.1460 -0.5129 15 7 6.2462 0.7151 0.0162 16 14 6.0383 -1.7486 -1.2338 17 1 6.3557 -1.5533 -2.6713 18 1 7.2646 -2.1670 -0.5085 19 1 4.9981 -2.7992 -1.0948 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 1.8934 -0.5138 -0.8899 24 1 1.8934 -0.5137 0.8900 25 1 0.3865 2.4355 0.9618 26 1 1.4351 1.5296 2.0667 27 1 1.5333 4.1086 2.1711 28 1 3.0715 3.2303 2.1138 29 1 2.5319 5.3311 0.5455 30 1 1.9001 4.0287 -0.4962 31 1 4.6107 3.7785 0.8521 32 1 4.4433 4.6591 -0.6781 33 1 3.4709 2.7044 -1.6921 34 1 5.1053 2.4137 -1.0682 35 1 4.9460 1.5695 1.5000 36 1 7.1958 0.5179 0.0325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606255758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:35 Heat of formation + Delta-G solvation = -83.136008 kcal Electronic energy + Delta-G solvation = -15825.195529 eV Core-core repulsion = 13500.984804 eV Total energy + Delta-G solvation = -2324.210725 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.54790 -35.84701 -35.54531 -33.91836 -32.25184 -30.20523 -27.59240 -25.68785 -24.02025 -22.58860 -20.82856 -19.72347 -18.63441 -17.18619 -16.15041 -15.94628 -15.65146 -15.51760 -14.70190 -14.26200 -14.15244 -13.75576 -13.54380 -13.11028 -13.07817 -12.71912 -12.50333 -12.41323 -12.17344 -11.89815 -11.58195 -11.42206 -11.34363 -11.17055 -11.04000 -10.75859 -10.47999 -10.33050 -9.58713 -8.07929 -6.21397 1.39574 1.42856 1.50582 2.43832 3.15329 4.06526 4.08462 4.18962 4.36946 4.42606 4.51078 4.60657 4.68688 4.76309 4.86111 4.94947 5.01025 5.07436 5.12478 5.24669 5.26272 5.37291 5.44135 5.52810 5.60929 5.67261 5.68163 5.75080 5.79769 5.91933 6.01708 6.20205 6.41907 6.87136 7.49638 7.73397 8.94126 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029937 B = 0.014087 C = 0.010709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.080037 B = 1987.125921 C = 2614.001029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.065 4.065 4 H 0.055 0.945 5 C -0.084 4.084 6 C -0.117 4.117 7 C -0.105 4.105 8 C -0.099 4.099 9 C -0.131 4.131 10 C 0.254 3.746 11 O -0.582 6.582 12 C -0.553 4.553 13 H 0.071 0.929 14 C 0.024 3.976 15 N -0.916 5.916 16 Si 0.946 3.054 17 H -0.280 1.280 18 H -0.287 1.287 19 H -0.273 1.273 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.366 0.634 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 3.471 0.160 8.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.083 4.083 4 H 0.073 0.927 5 C -0.122 4.122 6 C -0.154 4.154 7 C -0.142 4.142 8 C -0.137 4.137 9 C -0.169 4.169 10 C 0.215 3.785 11 O -0.390 6.390 12 C -0.591 4.591 13 H 0.089 0.911 14 C -0.174 4.174 15 N -0.558 5.558 16 Si 0.773 3.227 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.198 1.198 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.215 0.785 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.936 3.497 0.308 8.678 hybrid contribution 1.599 -1.017 -0.609 1.991 sum -6.336 2.480 -0.301 6.811 Atomic orbital electron populations 1.21865 0.95288 1.01427 1.01824 1.21652 0.95084 0.96843 1.00830 1.20893 0.94500 0.95327 0.97587 0.92677 1.21616 0.97689 0.95872 0.97012 1.21343 1.00708 0.95482 0.97848 1.21235 0.95682 0.99147 0.98165 1.20313 0.97275 0.96503 0.99609 1.20939 1.01173 0.96374 0.98426 1.18381 0.90041 0.90519 0.79554 1.86177 1.27529 1.96144 1.29159 1.22606 0.92783 1.05506 1.38229 0.91120 1.25639 0.97286 0.99133 0.95364 1.69627 1.03128 1.36316 1.46724 0.85748 0.77660 0.80997 0.78287 1.20560 1.21276 1.19784 0.92660 0.92338 0.92496 0.92624 0.94437 0.92165 0.94129 0.92373 0.91982 0.91227 0.92446 0.93832 0.93839 0.94988 0.93771 0.78455 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.43 9.47 71.98 0.68 -3.75 16 2 C -0.11 -4.21 4.22 30.60 0.13 -4.08 16 3 C -0.06 -2.65 1.65 -11.25 -0.02 -2.66 16 4 H 0.05 2.20 6.63 -2.39 -0.02 2.19 16 5 C -0.08 -3.04 3.66 31.31 0.11 -2.93 16 6 C -0.12 -4.06 5.29 30.09 0.16 -3.90 16 7 C -0.10 -3.52 5.59 30.15 0.17 -3.35 16 8 C -0.10 -3.96 5.18 28.74 0.15 -3.81 16 9 C -0.13 -6.06 4.39 28.74 0.13 -5.93 16 10 C 0.25 12.19 0.55 -11.94 -0.01 12.18 16 11 O -0.58 -29.29 8.54 -148.98 -1.27 -30.57 16 12 C -0.55 -29.20 7.40 25.60 0.19 -29.01 16 13 H 0.07 3.69 4.84 -2.91 -0.01 3.67 16 14 C 0.02 1.29 5.09 84.66 0.43 1.72 16 15 N -0.92 -49.77 9.91 21.45 0.21 -49.55 16 16 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 20 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 21 H 0.06 1.65 6.68 -2.39 -0.02 1.63 16 22 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 2.34 5.72 -2.39 -0.01 2.33 16 24 H 0.04 1.63 8.09 -2.39 -0.02 1.61 16 25 H 0.06 1.85 7.31 -2.39 -0.02 1.84 16 26 H 0.04 1.55 7.98 -2.39 -0.02 1.53 16 27 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.06 2.50 5.32 -2.39 -0.01 2.48 16 29 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.06 1.89 6.97 -2.38 -0.02 1.87 16 31 H 0.04 1.87 6.72 -2.39 -0.02 1.85 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.42 7.47 -2.39 -0.02 1.40 16 34 H 0.04 2.32 6.32 -2.39 -0.02 2.30 16 35 H 0.37 19.76 6.76 -74.06 -0.50 19.26 16 36 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -54.61 257.62 3.65 -50.96 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.56 Total: 29.63 kcal Atomic # 6 Polarization: -47.65 SS G_CDS: 2.12 Total: -45.52 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.21 Total: -49.55 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.27 Total: -30.57 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -54.61 3.65 -50.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606255758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.171 kcal (2) G-P(sol) polarization free energy of solvation -54.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds