Wall clock time and date at job start Mon Mar 30 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99686 * 2 1 4 4 H 1.48498 * 109.47153 * 270.00020 * 3 2 1 5 5 H 1.48492 * 109.47024 * 30.00224 * 3 2 1 6 6 H 1.48501 * 109.47072 * 150.00457 * 3 2 1 7 7 C 1.37881 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00005 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47179 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47178 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47184 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47143 * 179.97438 * 12 11 10 14 14 N 1.45396 * 111.00233 * 173.78913 * 13 12 11 15 15 C 1.48542 * 110.99733 * 8.55649 * 14 13 12 16 16 C 1.54934 * 103.22869 * 159.71829 * 15 14 13 17 17 C 1.54597 * 102.91800 * 322.58458 * 16 15 14 18 18 C 1.47898 * 110.99877 * 125.94537 * 14 13 12 19 19 H 0.96997 * 120.00586 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.47007 * 59.99599 * 9 7 2 21 21 H 1.09008 * 109.46780 * 300.00189 * 9 7 2 22 22 H 1.09000 * 109.47431 * 299.99983 * 10 9 7 23 23 H 1.08999 * 109.46991 * 60.00073 * 10 9 7 24 24 H 1.09004 * 109.47072 * 299.99577 * 11 10 9 25 25 H 1.08991 * 109.47224 * 59.99894 * 11 10 9 26 26 H 1.08996 * 109.46943 * 300.00045 * 12 11 10 27 27 H 1.08999 * 109.46980 * 60.00118 * 12 11 10 28 28 H 1.00902 * 110.99571 * 49.84225 * 13 12 11 29 29 H 1.08997 * 110.66399 * 278.15383 * 15 14 13 30 30 H 1.08999 * 110.66380 * 41.27854 * 15 14 13 31 31 H 1.08997 * 110.72461 * 204.22996 * 16 15 14 32 32 H 1.08996 * 110.72262 * 80.93794 * 16 15 14 33 33 H 1.09004 * 110.30862 * 263.03634 * 17 16 15 34 34 H 1.09004 * 110.31127 * 140.87476 * 17 16 15 35 35 H 1.09000 * 109.91914 * 333.51759 * 18 14 13 36 36 H 1.09004 * 109.91689 * 94.61160 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 6 2.4748 -6.1500 -0.0005 13 7 1.7404 -7.4222 0.0007 14 7 2.6484 -8.5482 -0.1467 15 6 4.0635 -8.1070 -0.0502 16 6 4.8189 -9.4133 0.3009 17 6 3.8386 -10.1338 1.2548 18 6 2.4569 -9.5296 0.9430 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8902 21 1 0.6248 -2.5571 0.8897 22 1 2.8721 -3.6043 -0.8905 23 1 2.8721 -3.6042 0.8895 24 1 0.8542 -5.0446 0.8904 25 1 0.8536 -5.0451 -0.8896 26 1 3.1008 -6.0922 -0.8910 27 1 3.1021 -6.0921 0.8890 28 1 1.0328 -7.4318 -0.7185 29 1 4.4079 -7.7080 -1.0042 30 1 4.1829 -7.3685 0.7425 31 1 5.7578 -9.1915 0.8083 32 1 4.9945 -10.0098 -0.5943 33 1 4.1103 -9.9413 2.2927 34 1 3.8363 -11.2056 1.0561 35 1 2.0619 -9.0300 1.8276 36 1 1.7700 -10.3125 0.6212 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686774208.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:28 Heat of formation + Delta-G solvation = 11.525665 kcal Electronic energy + Delta-G solvation = -13857.464375 eV Core-core repulsion = 11569.651239 eV Total energy + Delta-G solvation = -2287.813135 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.95315 -35.67375 -33.63639 -32.00333 -29.56041 -28.81996 -26.88841 -24.37660 -22.26065 -20.89544 -20.11838 -19.94742 -16.92787 -16.24100 -16.12285 -15.23066 -14.73168 -14.41368 -13.86595 -13.27179 -12.95086 -12.45867 -12.35019 -12.26939 -11.77876 -11.54568 -11.50450 -11.15908 -11.02485 -10.74470 -10.62114 -10.53217 -10.37221 -9.67543 -9.63672 -9.24985 -9.00096 -8.32693 -7.90394 -5.97627 -4.00010 3.32942 3.38916 3.41381 3.43269 4.32535 4.47667 4.56080 4.78326 5.09510 5.16416 5.33094 5.36808 5.38356 5.43466 5.59547 5.63101 5.66108 5.84088 5.86887 5.87795 6.02923 6.09566 6.26465 6.47232 6.57081 6.79424 6.93584 7.14135 7.28343 7.49377 7.70732 7.86138 8.03074 8.45793 9.07385 9.63882 11.13747 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.072476 B = 0.004389 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.243309 B = 6378.383086 C = 6632.571246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.115 4.115 12 C 0.041 3.959 13 N -0.544 5.544 14 N -0.363 5.363 15 C 0.009 3.991 16 C -0.123 4.123 17 C -0.133 4.133 18 C 0.040 3.960 19 H 0.260 0.740 20 H 0.015 0.985 21 H 0.016 0.984 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.356 0.644 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.951 -18.067 0.889 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.089 4.089 13 N -0.267 5.267 14 N -0.178 5.178 15 C -0.120 4.120 16 C -0.162 4.162 17 C -0.171 4.171 18 C -0.089 4.089 19 H 0.070 0.930 20 H 0.033 0.967 21 H 0.034 0.966 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.174 0.826 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.640 -18.237 1.061 19.437 hybrid contribution 0.790 1.484 -0.167 1.690 sum 7.430 -16.753 0.895 18.348 Atomic orbital electron populations 1.69962 1.06055 1.26552 1.50965 1.25032 0.94843 0.99237 0.95390 0.86606 0.79852 0.83538 0.78079 1.20683 1.21213 1.19904 1.21281 0.93011 0.91201 1.50428 0.92775 1.19094 0.94016 0.91309 0.97214 1.21578 0.99089 0.93761 1.00117 1.21646 0.97825 0.93770 1.02180 1.22474 0.97390 0.88592 1.00424 1.63734 1.11720 0.98542 1.52701 1.68111 1.01114 1.07002 1.41527 1.23667 0.88899 0.97586 1.01821 1.22452 0.97951 0.96106 0.99698 1.22435 0.94827 1.00310 0.99570 1.22845 0.96821 0.95053 0.94145 0.93024 0.96653 0.96585 0.93573 0.93473 0.91592 0.92408 0.94401 0.91096 0.82552 0.90003 0.91848 0.90918 0.90825 0.91466 0.91065 0.92276 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.12 -1.99 5.41 -26.73 -0.14 -2.13 16 12 C 0.04 0.60 4.59 -3.82 -0.02 0.58 16 13 N -0.54 -7.52 6.94 -10.37 -0.07 -7.59 16 14 N -0.36 -4.60 6.18 -110.08 -0.68 -5.28 16 15 C 0.01 0.10 5.24 -1.89 -0.01 0.09 16 16 C -0.12 -1.11 7.06 -24.87 -0.18 -1.29 16 17 C -0.13 -1.17 6.93 -25.38 -0.18 -1.35 16 18 C 0.04 0.44 6.97 -2.76 -0.02 0.42 16 19 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 20 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.55 7.07 -51.93 -0.37 0.19 16 27 H 0.07 1.06 6.47 -51.93 -0.34 0.72 16 28 H 0.36 4.70 8.89 -174.66 -1.55 3.15 16 29 H 0.08 0.94 7.64 -51.93 -0.40 0.54 16 30 H 0.06 0.78 5.89 -51.93 -0.31 0.47 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.71 8.00 -51.93 -0.42 0.30 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 287.74 15.07 4.34 4.34 Total: -1.00 -30.41 287.74 -9.50 -39.91 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.57 Total: -2.15 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -1.23 Total: -19.48 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: -0.02 Total: -39.51 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.41 -9.50 -39.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686774208.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.434 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds