Wall clock time and date at job start Mon Mar 30 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99686 * 2 1 4 4 H 1.48498 * 109.47153 * 270.00020 * 3 2 1 5 5 H 1.48492 * 109.47024 * 30.00224 * 3 2 1 6 6 H 1.48501 * 109.47072 * 150.00457 * 3 2 1 7 7 C 1.37881 * 120.00424 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00005 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47179 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47178 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47184 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47143 * 179.97438 * 12 11 10 14 14 N 1.45396 * 111.00233 * 173.78913 * 13 12 11 15 15 C 1.48542 * 110.99733 * 8.55649 * 14 13 12 16 16 C 1.54934 * 103.22869 * 159.71829 * 15 14 13 17 17 C 1.54597 * 102.91800 * 322.58458 * 16 15 14 18 18 C 1.47898 * 110.99877 * 125.94537 * 14 13 12 19 19 H 0.96997 * 120.00586 * 359.97438 * 1 2 3 20 20 H 1.08994 * 109.47007 * 59.99599 * 9 7 2 21 21 H 1.09008 * 109.46780 * 300.00189 * 9 7 2 22 22 H 1.09000 * 109.47431 * 299.99983 * 10 9 7 23 23 H 1.08999 * 109.46991 * 60.00073 * 10 9 7 24 24 H 1.09004 * 109.47072 * 299.99577 * 11 10 9 25 25 H 1.08991 * 109.47224 * 59.99894 * 11 10 9 26 26 H 1.08996 * 109.46943 * 300.00045 * 12 11 10 27 27 H 1.08999 * 109.46980 * 60.00118 * 12 11 10 28 28 H 1.00902 * 110.99571 * 49.84225 * 13 12 11 29 29 H 1.08997 * 110.66399 * 278.15383 * 15 14 13 30 30 H 1.08999 * 110.66380 * 41.27854 * 15 14 13 31 31 H 1.08997 * 110.72461 * 204.22996 * 16 15 14 32 32 H 1.08996 * 110.72262 * 80.93794 * 16 15 14 33 33 H 1.09004 * 110.30862 * 263.03634 * 17 16 15 34 34 H 1.09004 * 110.31127 * 140.87476 * 17 16 15 35 35 H 1.09000 * 109.91914 * 333.51759 * 18 14 13 36 36 H 1.09004 * 109.91689 * 94.61160 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4805 -4.9870 0.0001 12 6 2.4748 -6.1500 -0.0005 13 7 1.7404 -7.4222 0.0007 14 7 2.6484 -8.5482 -0.1467 15 6 4.0635 -8.1070 -0.0502 16 6 4.8189 -9.4133 0.3009 17 6 3.8386 -10.1338 1.2548 18 6 2.4569 -9.5296 0.9430 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8902 21 1 0.6248 -2.5571 0.8897 22 1 2.8721 -3.6043 -0.8905 23 1 2.8721 -3.6042 0.8895 24 1 0.8542 -5.0446 0.8904 25 1 0.8536 -5.0451 -0.8896 26 1 3.1008 -6.0922 -0.8910 27 1 3.1021 -6.0921 0.8890 28 1 1.0328 -7.4318 -0.7185 29 1 4.4079 -7.7080 -1.0042 30 1 4.1829 -7.3685 0.7425 31 1 5.7578 -9.1915 0.8083 32 1 4.9945 -10.0098 -0.5943 33 1 4.1103 -9.9413 2.2927 34 1 3.8363 -11.2056 1.0561 35 1 2.0619 -9.0300 1.8276 36 1 1.7700 -10.3125 0.6212 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686774208.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:28 Heat of formation + Delta-G solvation = -8.091388 kcal Electronic energy + Delta-G solvation = -13858.315034 eV Core-core repulsion = 11569.651239 eV Total energy + Delta-G solvation = -2288.663795 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.88468 -37.10101 -35.34024 -33.72043 -30.89807 -29.80099 -28.32802 -26.02172 -23.72463 -22.02369 -21.56340 -21.00982 -18.49059 -17.81017 -17.19437 -16.55262 -16.34587 -15.89224 -14.97469 -14.57883 -14.26978 -14.08269 -13.59788 -13.45666 -13.17948 -13.01698 -12.86275 -12.44035 -12.33470 -12.24052 -12.17935 -11.94383 -11.46743 -11.39554 -11.30741 -11.11327 -10.58692 -10.55999 -8.93605 -8.20720 -6.32429 1.39286 1.40999 1.52171 2.38094 2.43426 3.12104 3.46702 3.80393 3.95422 4.04954 4.10946 4.20306 4.33715 4.43947 4.56951 4.61985 4.73910 4.82343 4.84976 4.90762 4.95938 5.06033 5.13305 5.15561 5.25846 5.29162 5.30542 5.52392 5.68546 5.75449 5.85185 6.19472 6.24260 6.46053 6.84979 7.37037 8.91229 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.072476 B = 0.004389 C = 0.004221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.243309 B = 6378.383086 C = 6632.571246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.095 4.095 11 C -0.104 4.104 12 C 0.056 3.944 13 N -0.550 5.550 14 N -0.371 5.371 15 C 0.002 3.998 16 C -0.118 4.118 17 C -0.128 4.128 18 C 0.036 3.964 19 H 0.264 0.736 20 H -0.009 1.009 21 H -0.010 1.010 22 H 0.051 0.949 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.358 0.642 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.603 -18.688 0.899 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.133 4.133 11 C -0.143 4.143 12 C -0.073 4.073 13 N -0.273 5.273 14 N -0.185 5.185 15 C -0.126 4.126 16 C -0.156 4.156 17 C -0.166 4.166 18 C -0.093 4.093 19 H 0.073 0.927 20 H 0.009 0.991 21 H 0.008 0.992 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.089 0.911 28 H 0.177 0.823 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.299 -18.876 1.072 20.647 hybrid contribution 0.234 1.634 -0.171 1.659 sum 8.533 -17.242 0.901 19.259 Atomic orbital electron populations 1.70098 1.07869 1.27814 1.51681 1.26020 0.95793 1.03484 0.94680 0.85427 0.78657 0.78293 0.78552 1.19679 1.20667 1.18686 1.21738 0.93576 0.92510 1.50581 0.92181 1.19025 0.94504 0.93229 0.94735 1.21373 0.97980 0.93435 1.00500 1.21452 0.97912 0.93133 1.01846 1.22209 0.96401 0.88114 1.00589 1.63697 1.12124 0.98550 1.52975 1.68153 1.01516 1.06431 1.42429 1.23740 0.88611 0.98782 1.01444 1.22465 0.98245 0.94743 1.00194 1.22438 0.93169 1.01137 0.99893 1.22937 0.98458 0.94749 0.93115 0.92739 0.99067 0.99178 0.93003 0.93115 0.92395 0.92344 0.94049 0.91095 0.82322 0.90187 0.92776 0.89457 0.90139 0.90843 0.89344 0.93633 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.82 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.09 -3.94 5.15 30.59 0.16 -3.79 16 11 C -0.10 -3.59 5.41 30.60 0.17 -3.43 16 12 C 0.06 1.61 4.59 86.30 0.40 2.01 16 13 N -0.55 -14.76 6.94 -186.72 -1.30 -16.05 16 14 N -0.37 -8.89 6.18 -502.20 -3.10 -11.99 16 15 C 0.00 0.05 5.24 86.65 0.45 0.51 16 16 C -0.12 -1.84 7.06 31.80 0.22 -1.61 16 17 C -0.13 -1.94 6.93 31.47 0.22 -1.72 16 18 C 0.04 0.74 6.97 86.45 0.60 1.34 16 19 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 20 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 21 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 22 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.04 1.16 7.07 -2.39 -0.02 1.14 16 27 H 0.07 2.04 6.47 -2.39 -0.02 2.03 16 28 H 0.36 9.21 8.89 -204.85 -1.82 7.39 16 29 H 0.08 1.71 7.64 -2.39 -0.02 1.69 16 30 H 0.05 1.25 5.89 -2.39 -0.01 1.24 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.05 1.05 8.00 -2.39 -0.02 1.04 16 36 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -64.76 287.74 0.18 -64.58 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -0.79 Total: 10.93 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 3.06 Total: -36.60 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -4.11 Total: -85.72 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.76 0.18 -64.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686774208.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.487 kcal (2) G-P(sol) polarization free energy of solvation -64.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds