Wall clock time and date at job start Mon Mar 30 2020 03:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46980 * 2 1 4 4 C 1.52999 * 109.46920 * 240.00035 * 2 1 3 5 5 N 1.46897 * 109.47171 * 120.00074 * 2 1 3 6 6 C 1.47959 * 111.00162 * 59.45736 * 5 2 1 7 7 C 1.53929 * 86.18172 * 222.42003 * 6 5 2 8 8 C 1.47958 * 111.00075 * 320.09886 * 5 2 1 9 9 H 1.09000 * 113.76187 * 23.26368 * 8 5 2 10 10 C 1.53006 * 113.76087 * 251.90173 * 8 5 2 11 11 N 1.46503 * 109.47075 * 199.67446 * 10 8 5 12 12 C 1.36936 * 119.99351 * 184.87211 * 11 10 8 13 13 H 1.07994 * 120.00783 * 4.94750 * 12 11 10 14 14 C 1.38817 * 119.99300 * 184.94296 * 12 11 10 15 15 N 1.31622 * 119.99740 * 184.28699 * 14 12 11 16 16 Si 1.86799 * 120.00156 * 4.29198 * 14 12 11 17 17 H 1.48491 * 109.47323 * 93.28455 * 16 14 12 18 18 H 1.48505 * 109.46837 * 213.28260 * 16 14 12 19 19 H 1.48495 * 109.47125 * 333.28203 * 16 14 12 20 20 H 1.09001 * 109.47296 * 309.65736 * 1 2 3 21 21 H 1.09000 * 109.47077 * 69.66107 * 1 2 3 22 22 H 1.08999 * 109.47237 * 189.66268 * 1 2 3 23 23 H 1.09003 * 109.47049 * 184.13003 * 3 2 1 24 24 H 1.09003 * 109.46596 * 304.13021 * 3 2 1 25 25 H 1.08996 * 109.46947 * 64.13136 * 3 2 1 26 26 H 1.08998 * 109.47366 * 299.99685 * 4 2 1 27 27 H 1.09007 * 109.47231 * 59.99993 * 4 2 1 28 28 H 1.09005 * 109.47149 * 179.97438 * 4 2 1 29 29 H 1.09002 * 113.75634 * 108.10046 * 6 5 2 30 30 H 1.09004 * 113.85923 * 336.74961 * 6 5 2 31 31 H 1.08996 * 113.73712 * 138.08694 * 7 6 5 32 32 H 1.09002 * 113.73329 * 269.36273 * 7 6 5 33 33 H 1.08996 * 109.46726 * 319.67466 * 10 8 5 34 34 H 1.08997 * 109.46861 * 79.67334 * 10 8 5 35 35 H 0.96997 * 119.99882 * 4.87615 * 11 10 8 36 36 H 0.96993 * 119.99994 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0197 -0.6925 1.1994 6 6 1.5346 -2.0897 1.2402 7 6 1.2745 -1.8472 2.7378 8 6 1.1974 -0.3517 2.3813 9 1 0.1922 -0.0107 2.1334 10 6 1.9079 0.5588 3.3849 11 7 1.2437 0.4622 4.6872 12 6 1.6437 1.2663 5.7209 13 1 2.3930 2.0262 5.5553 14 6 1.0859 1.1047 6.9817 15 7 1.4073 1.9312 7.9544 16 14 -0.1208 -0.2857 7.2980 17 1 0.6114 -1.4676 7.8194 18 1 -1.1294 0.1517 8.2963 19 1 -0.8038 -0.6465 6.0297 20 1 -0.3634 0.6559 0.7912 21 1 -0.3633 0.3572 -0.9636 22 1 -0.3634 -1.0131 0.1725 23 1 3.1275 1.4435 -0.0740 24 1 1.6174 1.9772 -0.8507 25 1 1.7383 1.9345 0.9247 26 1 1.6767 -1.7489 -1.2493 27 1 1.6766 -0.2074 -2.1393 28 1 3.1300 -0.7209 -1.2495 29 1 2.3104 -2.8298 1.0433 30 1 0.6282 -2.2589 0.6588 31 1 0.3314 -2.2630 3.0923 32 1 2.1197 -2.1027 3.3769 33 1 2.9481 0.2486 3.4836 34 1 1.8679 1.5893 3.0321 35 1 0.5208 -0.1713 4.8171 36 1 1.0179 1.8180 8.8355 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690314986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:17 Heat of formation + Delta-G solvation = 28.098396 kcal Electronic energy + Delta-G solvation = -14875.461220 eV Core-core repulsion = 12588.366732 eV Total energy + Delta-G solvation = -2287.094488 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.69424 -36.90446 -35.56076 -33.44614 -29.79166 -28.39637 -28.20218 -27.77532 -25.11644 -23.40075 -21.15736 -20.01148 -19.28514 -17.35825 -16.70205 -16.32356 -15.64208 -15.49795 -14.92797 -14.79646 -14.58608 -14.18004 -13.74560 -13.41824 -13.29380 -12.99735 -12.83476 -12.70117 -12.30468 -12.13372 -12.09508 -11.92336 -11.88380 -11.62991 -11.37866 -11.26198 -10.94522 -9.57148 -9.30375 -8.04049 -5.38204 1.35884 1.42097 1.48755 2.47735 2.80826 3.26677 3.64459 3.75977 3.82404 3.97621 4.08319 4.17478 4.27320 4.38331 4.45332 4.67098 4.72443 4.75660 4.83570 4.88959 4.95765 4.97857 4.98478 5.06185 5.16498 5.23190 5.25755 5.34953 5.48041 5.64140 5.75588 6.19635 6.29205 7.06730 7.81728 8.04504 9.17696 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048071 B = 0.007722 C = 0.007178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.333512 B = 3625.142991 C = 3899.945983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 C -0.134 4.134 4 C -0.130 4.130 5 N -0.476 5.476 6 C 0.011 3.989 7 C -0.144 4.144 8 C 0.018 3.982 9 H 0.095 0.905 10 C 0.179 3.821 11 N -0.753 5.753 12 C -0.238 4.238 13 H 0.050 0.950 14 C -0.064 4.064 15 N -0.984 5.984 16 Si 0.961 3.039 17 H -0.279 1.279 18 H -0.293 1.293 19 H -0.248 1.248 20 H 0.050 0.950 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.017 0.983 34 H 0.014 0.986 35 H 0.368 0.632 36 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.454 -9.299 -19.741 22.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.029 4.029 3 C -0.192 4.192 4 C -0.188 4.188 5 N -0.199 5.199 6 C -0.117 4.117 7 C -0.182 4.182 8 C -0.091 4.091 9 H 0.113 0.887 10 C 0.053 3.947 11 N -0.399 5.399 12 C -0.369 4.369 13 H 0.069 0.931 14 C -0.255 4.255 15 N -0.634 5.634 16 Si 0.788 3.212 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.173 1.173 20 H 0.069 0.931 21 H 0.096 0.904 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.202 0.798 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.601 -8.985 -19.701 21.809 hybrid contribution -1.235 -0.197 0.808 1.489 sum -3.836 -9.182 -18.893 21.353 Atomic orbital electron populations 1.22532 0.95974 1.02466 1.02812 1.21629 0.93613 0.95388 0.92268 1.21776 1.01270 0.94771 1.01340 1.21784 1.01336 1.00265 0.95406 1.68663 1.46051 1.03562 1.01649 1.23906 1.00746 0.91962 0.95039 1.23331 1.02529 0.94706 0.97640 1.23751 0.97066 0.96086 0.92207 0.88734 1.20393 0.94491 0.96150 0.83709 1.42585 1.41878 1.46531 1.08939 1.19009 1.18409 1.10550 0.88979 0.93149 1.25576 1.02705 1.01900 0.95316 1.69901 1.49687 1.40974 1.02843 0.85309 0.78601 0.79117 0.78165 1.20488 1.21927 1.17290 0.93147 0.90422 0.91314 0.92710 0.90831 0.94504 0.91843 0.90842 0.92632 0.88625 0.89098 0.90442 0.90539 0.96477 0.96776 0.79761 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.54 7.24 71.98 0.52 -3.02 16 2 C 0.06 1.34 0.72 3.53 0.00 1.35 16 3 C -0.13 -3.22 8.67 71.98 0.62 -2.59 16 4 C -0.13 -2.25 8.37 71.98 0.60 -1.65 16 5 N -0.48 -12.73 5.79 -834.47 -4.83 -17.56 16 6 C 0.01 0.25 6.49 86.40 0.56 0.81 16 7 C -0.14 -3.98 7.48 31.24 0.23 -3.75 16 8 C 0.02 0.57 2.76 45.02 0.12 0.69 16 9 H 0.10 2.85 5.05 -2.39 -0.01 2.84 16 10 C 0.18 7.48 6.24 86.38 0.54 8.02 16 11 N -0.75 -36.90 5.27 -343.44 -1.81 -38.72 16 12 C -0.24 -14.24 10.47 84.03 0.88 -13.36 16 13 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 14 C -0.06 -3.84 5.50 84.86 0.47 -3.38 16 15 N -0.98 -64.44 13.97 21.65 0.30 -64.13 16 16 Si 0.96 46.10 27.97 68.60 1.92 48.02 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 19 H -0.25 -10.53 6.20 99.48 0.62 -9.92 16 20 H 0.05 1.17 6.30 -2.39 -0.02 1.15 16 21 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 22 H 0.07 1.23 5.79 -2.39 -0.01 1.21 16 23 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.04 1.05 6.77 -2.39 -0.02 1.04 16 26 H 0.06 0.97 7.05 -2.39 -0.02 0.96 16 27 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 1.61 5.56 -2.38 -0.01 1.60 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 32 H 0.08 2.38 8.10 -2.39 -0.02 2.36 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.01 0.62 7.20 -2.39 -0.02 0.61 16 35 H 0.37 16.90 5.20 -92.71 -0.48 16.42 16 36 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -68.21 275.85 0.61 -67.60 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.48 Total: 21.67 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 4.55 Total: -16.88 kcal Atomic # 7 Polarization: -114.07 SS G_CDS: -6.34 Total: -120.41 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.92 Total: 48.02 kcal Total: -68.21 0.61 -67.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690314986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.695 kcal (2) G-P(sol) polarization free energy of solvation -68.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds