Wall clock time and date at job start Mon Mar 30 2020 03:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.45350 * 2 1 4 4 C 1.53041 * 109.45745 * 240.03016 * 2 1 3 5 5 C 1.53124 * 109.27510 * 180.80250 * 4 2 1 6 6 H 1.09000 * 109.52368 * 297.74991 * 5 4 2 7 7 N 1.46898 * 109.52221 * 177.55717 * 5 4 2 8 8 C 1.46903 * 110.99854 * 155.31758 * 7 5 4 9 9 C 1.50704 * 109.47062 * 180.02562 * 8 7 5 10 10 H 1.07998 * 120.00109 * 359.97438 * 9 8 7 11 11 C 1.37874 * 119.99867 * 180.02562 * 9 8 7 12 12 N 1.31518 * 120.00206 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99886 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47501 * 59.99681 * 13 11 9 15 15 H 1.48506 * 109.47069 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47009 * 299.99445 * 13 11 9 17 17 C 1.53123 * 109.15980 * 57.65355 * 5 4 2 18 18 C 1.53036 * 109.27788 * 302.34618 * 17 5 4 19 19 N 1.46842 * 109.46391 * 119.97835 * 2 1 3 20 20 H 1.09004 * 109.47059 * 300.02091 * 1 2 3 21 21 H 1.08996 * 109.47282 * 60.02224 * 1 2 3 22 22 H 1.09003 * 109.47232 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47353 * 179.97438 * 3 2 1 24 24 H 1.09006 * 109.47575 * 299.97858 * 3 2 1 25 25 H 1.09002 * 109.47241 * 59.97452 * 3 2 1 26 26 H 1.08997 * 109.50282 * 300.74044 * 4 2 1 27 27 H 1.08997 * 109.50652 * 60.82437 * 4 2 1 28 28 H 1.00900 * 110.99802 * 31.36891 * 7 5 4 29 29 H 1.09003 * 109.47011 * 300.00132 * 8 7 5 30 30 H 1.08998 * 109.47145 * 60.00393 * 8 7 5 31 31 H 0.96999 * 119.99782 * 180.02562 * 12 11 9 32 32 H 1.09000 * 109.50367 * 182.40163 * 17 5 4 33 33 H 1.09006 * 109.50264 * 62.28502 * 17 5 4 34 34 H 1.08999 * 109.46075 * 179.19317 * 18 17 5 35 35 H 1.08998 * 109.46309 * 299.16289 * 18 17 5 36 36 H 1.00903 * 110.99784 * 305.85574 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0396 1.4426 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5709 -0.7360 -1.2358 6 1 3.9456 0.2871 -1.2673 7 7 4.0654 -1.4775 -2.4034 8 6 5.4236 -1.0484 -2.7630 9 6 5.8959 -1.8288 -3.9626 10 1 5.2518 -2.5698 -4.4126 11 6 7.1507 -1.5976 -4.4850 12 7 7.9353 -0.6957 -3.9368 13 14 7.7359 -2.5645 -5.9724 14 1 6.8204 -2.3171 -7.1151 15 1 9.1089 -2.1308 -6.3358 16 1 7.7434 -4.0138 -5.6489 17 6 4.0548 -1.4188 0.0465 18 6 3.4865 -0.6777 1.2589 19 7 2.0193 -0.6918 1.1993 20 1 -0.3633 0.5142 0.8898 21 1 -0.3633 0.5135 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 3.1296 1.4430 0.0005 24 1 1.6764 1.9563 -0.8902 25 1 1.6757 1.9565 0.8898 26 1 1.6658 -1.7446 -1.2577 27 1 1.6888 -0.1985 -2.1400 28 1 3.4364 -1.3804 -3.1864 29 1 5.4174 0.0152 -3.0014 30 1 6.0957 -1.2289 -1.9241 31 1 8.8180 -0.5328 -4.3045 32 1 5.1439 -1.3947 0.0829 33 1 3.7125 -2.4536 0.0593 34 1 3.8175 -1.1700 2.1734 35 1 3.8403 0.3532 1.2531 36 1 1.6195 -0.2926 2.0353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692180554.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:28 Heat of formation + Delta-G solvation = -36.189206 kcal Electronic energy + Delta-G solvation = -14699.727799 eV Core-core repulsion = 12409.845592 eV Total energy + Delta-G solvation = -2289.882207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.66014 -36.94499 -34.72083 -33.62439 -31.51981 -28.57801 -28.14005 -27.59067 -24.09966 -23.72238 -21.65588 -19.62695 -18.58836 -17.12036 -16.73367 -16.30676 -16.12886 -15.65222 -15.02430 -14.52296 -14.36949 -14.02604 -13.89209 -13.59613 -13.04973 -12.81819 -12.73385 -12.69481 -12.66552 -12.41338 -12.20851 -11.98354 -11.76949 -11.58193 -11.25124 -10.97488 -10.66457 -9.32929 -9.12847 -8.24188 -6.36110 1.39885 1.44056 1.52114 2.38953 3.08696 3.22690 3.45248 3.79946 3.90442 4.08085 4.27430 4.29091 4.39754 4.51076 4.60233 4.69689 4.80232 4.88341 4.92346 4.97090 5.02572 5.10936 5.15025 5.19597 5.23303 5.29317 5.37219 5.50729 5.62682 6.01895 6.13148 6.45891 6.61326 6.72181 6.88184 7.35194 8.87376 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057413 B = 0.006324 C = 0.006144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.575202 B = 4426.417595 C = 4556.281653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.112 3.888 3 C -0.181 4.181 4 C -0.097 4.097 5 C 0.084 3.916 6 H 0.016 0.984 7 N -0.686 5.686 8 C 0.214 3.786 9 C -0.539 4.539 10 H 0.064 0.936 11 C 0.000 4.000 12 N -0.935 5.935 13 Si 0.976 3.024 14 H -0.265 1.265 15 H -0.281 1.281 16 H -0.268 1.268 17 C -0.100 4.100 18 C 0.065 3.935 19 N -0.677 5.677 20 H 0.070 0.930 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.333 0.667 29 H -0.045 1.045 30 H -0.002 1.002 31 H 0.266 0.734 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.031 0.969 36 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.638 2.780 9.049 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.021 3.979 3 C -0.240 4.240 4 C -0.135 4.135 5 C -0.026 4.026 6 H 0.034 0.966 7 N -0.316 5.316 8 C 0.086 3.914 9 C -0.577 4.577 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.800 3.200 14 H -0.190 1.190 15 H -0.207 1.207 16 H -0.193 1.193 17 C -0.139 4.139 18 C -0.065 4.065 19 N -0.310 5.310 20 H 0.089 0.911 21 H 0.085 0.915 22 H 0.080 0.920 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.151 0.849 29 H -0.028 1.028 30 H 0.016 0.984 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.049 0.951 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.282 1.696 9.124 16.203 hybrid contribution 0.989 1.544 -0.921 2.052 sum -12.293 3.241 8.204 15.130 Atomic orbital electron populations 1.21768 0.91727 1.02689 1.02719 1.20896 0.96122 0.90803 0.90118 1.22567 1.00965 0.97551 1.02894 1.21720 0.92863 1.01441 0.97498 1.21625 0.95426 0.93804 0.91773 0.96587 1.60593 1.03963 1.58865 1.08171 1.19177 0.86161 0.91541 0.94547 1.21541 1.01056 1.21589 1.13502 0.91737 1.25995 0.96639 0.96353 1.00778 1.70095 1.09810 1.34765 1.42859 0.85344 0.77270 0.78797 0.78627 1.18987 1.20655 1.19293 1.21494 0.98522 1.00180 0.93696 1.21847 0.88277 0.98401 0.97982 1.60449 1.06592 1.58958 1.04984 0.91109 0.91501 0.91967 0.93968 0.91958 0.91015 0.91107 0.91655 0.84937 1.02755 0.98417 0.92574 0.94352 0.91802 0.89346 0.95061 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.71 71.98 0.63 -1.71 16 2 C 0.11 2.60 0.95 3.55 0.00 2.61 16 3 C -0.18 -4.13 7.86 71.98 0.57 -3.56 16 4 C -0.10 -2.86 4.16 30.65 0.13 -2.74 16 5 C 0.08 3.16 2.25 45.00 0.10 3.26 16 6 H 0.02 0.67 6.22 -2.39 -0.01 0.65 16 7 N -0.69 -31.29 6.30 -495.14 -3.12 -34.41 16 8 C 0.21 12.00 5.24 85.56 0.45 12.45 16 9 C -0.54 -31.81 9.32 25.60 0.24 -31.57 16 10 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 11 C 0.00 0.03 5.46 84.65 0.46 0.49 16 12 N -0.94 -57.88 13.29 21.45 0.28 -57.59 16 13 Si 0.98 45.13 29.54 68.60 2.03 47.15 16 14 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 C -0.10 -3.57 5.58 30.65 0.17 -3.40 16 18 C 0.06 1.73 6.25 86.33 0.54 2.27 16 19 N -0.68 -15.61 6.31 -470.30 -2.97 -18.58 16 20 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 21 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 22 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.04 1.16 4.80 -2.39 -0.01 1.15 16 24 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.33 14.40 8.36 -89.69 -0.75 13.65 16 29 H -0.05 -2.74 8.06 -2.39 -0.02 -2.75 16 30 H 0.00 -0.14 7.49 -2.39 -0.02 -0.16 16 31 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.04 1.54 7.52 -2.39 -0.02 1.52 16 33 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.03 0.84 6.19 -2.39 -0.01 0.83 16 36 H 0.35 6.27 8.79 -89.69 -0.79 5.48 16 Total: -1.00 -65.68 279.37 -0.97 -66.65 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.48 Total: 18.68 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 3.29 Total: -21.90 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -5.80 Total: -110.58 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -65.68 -0.97 -66.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692180554.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.462 kcal (2) G-P(sol) polarization free energy of solvation -65.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds