Wall clock time and date at job start Mon Mar 30 2020 02:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00329 * 2 1 4 4 H 1.48500 * 109.46979 * 271.05137 * 3 2 1 5 5 H 1.48500 * 109.46947 * 31.05041 * 3 2 1 6 6 H 1.48500 * 109.47140 * 151.05422 * 3 2 1 7 7 C 1.38821 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99959 * 344.39267 * 7 2 1 9 9 N 1.36932 * 119.99920 * 164.38772 * 7 2 1 10 10 C 1.46920 * 120.63131 * 327.95697 * 9 7 2 11 11 C 1.53196 * 108.77398 * 233.58598 * 10 9 7 12 12 C 1.53043 * 109.31329 * 305.36317 * 11 10 9 13 13 C 1.53042 * 109.53299 * 61.36848 * 12 11 10 14 14 C 1.46932 * 120.62934 * 147.93365 * 9 7 2 15 15 H 1.09001 * 109.58532 * 246.34458 * 14 9 7 16 16 C 1.53002 * 109.58621 * 6.62463 * 14 9 7 17 17 C 1.52995 * 109.47032 * 185.52943 * 16 14 9 18 18 C 1.53003 * 109.47170 * 174.59382 * 17 16 14 19 19 N 1.46892 * 109.47421 * 179.97438 * 18 17 16 20 20 H 0.97003 * 120.00058 * 0.02562 * 1 2 3 21 21 H 1.08995 * 109.58801 * 353.37261 * 10 9 7 22 22 H 1.08996 * 109.58766 * 113.66053 * 10 9 7 23 23 H 1.08999 * 109.49897 * 65.31647 * 11 10 9 24 24 H 1.09000 * 109.49967 * 185.38131 * 11 10 9 25 25 H 1.08998 * 109.46202 * 181.38365 * 12 11 10 26 26 H 1.09000 * 109.46271 * 301.36009 * 12 11 10 27 27 H 1.09001 * 109.49499 * 178.68526 * 13 12 11 28 28 H 1.08996 * 109.50202 * 58.58667 * 13 12 11 29 29 H 1.09004 * 109.46913 * 65.52894 * 16 14 9 30 30 H 1.09002 * 109.47245 * 305.53693 * 16 14 9 31 31 H 1.08999 * 109.47300 * 54.59557 * 17 16 14 32 32 H 1.09000 * 109.47088 * 294.58980 * 17 16 14 33 33 H 1.09005 * 109.47221 * 59.99707 * 18 17 16 34 34 H 1.08996 * 109.47201 * 300.00397 * 18 17 16 35 35 H 1.00898 * 110.99792 * 56.04703 * 19 18 17 36 36 H 1.00896 * 111.00073 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4755 2.0591 -1.3998 5 1 1.4590 2.6461 0.7222 6 1 3.5587 1.4337 0.6776 7 6 2.0102 -1.2022 0.0005 8 1 1.5001 -2.1202 0.2526 9 7 3.3417 -1.2243 -0.3186 10 6 3.8961 -0.2652 -1.2837 11 6 4.6420 -1.0393 -2.3751 12 6 5.6851 -1.9516 -1.7256 13 6 4.9850 -2.9595 -0.8112 14 6 4.2431 -2.2072 0.2980 15 1 4.9610 -1.6937 0.9376 16 6 3.4285 -3.1971 1.1330 17 6 4.3777 -4.1336 1.8832 18 6 3.5706 -5.0342 2.8205 19 7 4.4818 -5.9338 3.5403 20 1 -0.4850 0.8401 -0.0004 21 1 3.0869 0.3108 -1.7324 22 1 4.5854 0.4084 -0.7746 23 1 3.9332 -1.6430 -2.9420 24 1 5.1387 -0.3370 -3.0445 25 1 6.2341 -2.4854 -2.5013 26 1 6.3788 -1.3497 -1.1386 27 1 5.7263 -3.6239 -0.3671 28 1 4.2730 -3.5451 -1.3927 29 1 2.7843 -3.7822 0.4766 30 1 2.8160 -2.6501 1.8498 31 1 5.0849 -3.5436 2.4661 32 1 4.9217 -4.7495 1.1670 33 1 2.8633 -5.6243 2.2376 34 1 3.0264 -4.4185 3.5366 35 1 5.1878 -5.4115 4.0371 36 1 3.9724 -6.5396 4.1660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693952523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:43 Heat of formation + Delta-G solvation = 0.278450 kcal Electronic energy + Delta-G solvation = -14941.894939 eV Core-core repulsion = 12653.594088 eV Total energy + Delta-G solvation = -2288.300851 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.23441 -35.60329 -33.03903 -32.53436 -30.66924 -28.89906 -25.35372 -24.26075 -22.62804 -21.19969 -20.16095 -19.21518 -16.40171 -15.81633 -15.39397 -15.04127 -14.15096 -14.00431 -13.62867 -13.38991 -13.33501 -13.05002 -12.29788 -11.90324 -11.76311 -11.40017 -10.97675 -10.87427 -10.80229 -10.51760 -10.24871 -10.03528 -10.00417 -9.73061 -9.40754 -9.25259 -8.65909 -8.55670 -6.81077 -5.89353 -3.29705 3.35181 3.50221 3.54013 4.56537 4.59946 5.00900 5.26932 5.33698 5.41514 5.48781 5.58786 5.63524 5.79043 5.87149 6.06624 6.11674 6.17065 6.19782 6.33055 6.40249 6.41575 6.53145 6.58983 6.64546 6.72204 6.78245 6.91878 7.08116 7.18092 7.19446 7.44201 8.07652 8.41795 9.01579 9.78666 10.19753 11.26626 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.010743 C = 0.008357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.500485 B = 2605.662301 C = 3349.751419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.023 3.977 3 Si 0.887 3.113 4 H -0.289 1.289 5 H -0.305 1.305 6 H -0.271 1.271 7 C -0.255 4.255 8 H 0.089 0.911 9 N -0.605 5.605 10 C 0.125 3.875 11 C -0.135 4.135 12 C -0.111 4.111 13 C -0.131 4.131 14 C 0.179 3.821 15 H 0.027 0.973 16 C -0.107 4.107 17 C -0.115 4.115 18 C 0.060 3.940 19 N -0.855 5.855 20 H 0.261 0.739 21 H 0.069 0.931 22 H 0.022 0.978 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.027 0.973 35 H 0.337 0.663 36 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.966 -6.239 2.105 11.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.176 4.176 3 Si 0.718 3.282 4 H -0.217 1.217 5 H -0.234 1.234 6 H -0.196 1.196 7 C -0.383 4.383 8 H 0.106 0.894 9 N -0.329 5.329 10 C 0.000 4.000 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.170 4.170 14 C 0.073 3.927 15 H 0.044 0.956 16 C -0.145 4.145 17 C -0.154 4.154 18 C -0.071 4.071 19 N -0.383 5.383 20 H 0.071 0.929 21 H 0.087 0.913 22 H 0.040 0.960 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.149 0.851 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 9.974 -6.425 1.397 11.946 hybrid contribution 0.035 1.555 0.782 1.741 sum 10.008 -4.870 2.180 11.341 Atomic orbital electron populations 1.69788 1.05692 1.26393 1.53931 1.25390 0.95235 0.97623 0.99347 0.86888 0.79751 0.84492 0.77066 1.21682 1.23384 1.19608 1.18914 0.82791 0.94208 1.42425 0.89395 1.44414 1.05903 1.36803 1.45808 1.21342 0.96474 0.92127 0.90092 1.22004 0.98078 0.98827 0.98523 1.21402 0.97469 0.97639 0.98310 1.22069 0.99026 0.97641 0.98226 1.20435 0.91192 0.89516 0.91559 0.95586 1.21611 0.97567 0.96378 0.98971 1.21617 0.98376 0.97192 0.98204 1.21846 0.94684 0.94167 0.96393 1.58771 1.18290 1.25438 1.35833 0.92890 0.91252 0.95973 0.91909 0.93198 0.93368 0.92951 0.92796 0.92087 0.91845 0.90711 0.92769 0.91592 0.91102 0.95460 0.85115 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.19 13.97 55.49 0.78 -27.42 16 2 C 0.02 0.66 5.29 -17.43 -0.09 0.56 16 3 Si 0.89 22.86 24.32 -169.99 -4.13 18.72 16 4 H -0.29 -7.23 6.64 56.52 0.38 -6.85 16 5 H -0.31 -8.00 7.11 56.52 0.40 -7.60 16 6 H -0.27 -6.88 6.52 56.52 0.37 -6.52 16 7 C -0.25 -7.06 8.89 -15.06 -0.13 -7.19 16 8 H 0.09 2.57 6.59 -52.49 -0.35 2.22 16 9 N -0.60 -14.50 2.72 -164.77 -0.45 -14.95 16 10 C 0.13 2.81 4.18 -3.71 -0.02 2.79 16 11 C -0.14 -2.50 6.08 -26.61 -0.16 -2.66 16 12 C -0.11 -1.82 5.88 -26.69 -0.16 -1.97 16 13 C -0.13 -2.24 5.01 -26.61 -0.13 -2.37 16 14 C 0.18 3.57 2.95 -67.60 -0.20 3.37 16 15 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 16 C -0.11 -1.98 3.46 -26.73 -0.09 -2.07 16 17 C -0.12 -1.71 5.13 -26.73 -0.14 -1.84 16 18 C 0.06 0.80 6.79 -3.83 -0.03 0.78 16 19 N -0.85 -9.79 9.62 -10.37 -0.10 -9.89 16 20 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 21 H 0.07 1.69 4.74 -51.93 -0.25 1.45 16 22 H 0.02 0.50 6.89 -51.93 -0.36 0.14 16 23 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.81 7.02 -51.93 -0.36 0.45 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.24 7.74 -51.93 -0.40 0.83 16 30 H 0.07 1.55 7.31 -51.93 -0.38 1.17 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.96 7.01 -51.93 -0.36 0.60 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.34 3.44 8.99 -39.29 -0.35 3.09 16 36 H 0.34 3.21 9.08 -39.29 -0.36 2.85 16 LS Contribution 271.51 15.07 4.09 4.09 Total: -1.00 -30.24 271.51 -7.13 -37.37 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.17 Total: 2.67 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -1.15 Total: -10.60 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.23 Total: -52.26 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.13 Total: 18.72 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.24 -7.13 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693952523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.652 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds