Wall clock time and date at job start Mon Mar 30 2020 03:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00375 * 2 1 4 4 H 1.07997 * 120.00400 * 154.72701 * 3 2 1 5 5 C 1.38818 * 119.99726 * 334.72730 * 3 2 1 6 6 N 1.31618 * 119.99903 * 4.25889 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 184.25622 * 5 3 2 8 8 H 1.48493 * 109.47192 * 60.00281 * 7 5 3 9 9 H 1.48503 * 109.46739 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47316 * 299.99485 * 7 5 3 11 11 C 1.46507 * 119.99909 * 179.97438 * 2 1 3 12 12 H 1.08990 * 110.64358 * 180.70003 * 11 2 1 13 13 C 1.54937 * 110.72349 * 303.86010 * 11 2 1 14 14 N 1.48733 * 103.13434 * 155.62322 * 13 11 2 15 15 C 1.46900 * 111.03933 * 200.42405 * 14 13 11 16 16 C 1.47898 * 105.94015 * 321.03278 * 14 13 11 17 17 C 1.52999 * 109.92045 * 265.84960 * 16 14 13 18 18 C 1.53002 * 110.07855 * 144.64929 * 16 14 13 19 19 C 1.53999 * 107.06075 * 25.20618 * 16 14 13 20 20 H 1.09001 * 109.46997 * 84.50395 * 1 2 3 21 21 H 1.09006 * 109.47195 * 324.51066 * 1 2 3 22 22 H 1.09004 * 109.47397 * 204.51105 * 1 2 3 23 23 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 24 24 H 1.09004 * 110.66357 * 274.20423 * 13 11 2 25 25 H 1.08991 * 110.67007 * 37.33125 * 13 11 2 26 26 H 1.09004 * 109.46711 * 177.57799 * 15 14 13 27 27 H 1.09001 * 109.47081 * 297.57010 * 15 14 13 28 28 H 1.08992 * 109.47737 * 57.57576 * 15 14 13 29 29 H 1.09001 * 109.47355 * 177.59031 * 17 16 14 30 30 H 1.09000 * 109.47065 * 297.59678 * 17 16 14 31 31 H 1.09006 * 109.47002 * 57.59334 * 17 16 14 32 32 H 1.09004 * 109.47219 * 302.30623 * 18 16 14 33 33 H 1.08995 * 109.47159 * 62.31165 * 18 16 14 34 34 H 1.09008 * 109.47045 * 182.31076 * 18 16 14 35 35 H 1.08996 * 110.30794 * 239.85653 * 19 16 14 36 36 H 1.08995 * 110.39416 * 117.72855 * 19 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1522 1.2306 0.3993 5 6 1.5553 2.3305 -0.5133 6 7 0.3049 2.2957 -0.9227 7 14 2.5302 3.9202 -0.6228 8 1 3.7183 3.7136 -1.4893 9 1 1.6742 4.9868 -1.2016 10 1 2.9726 4.3242 0.7360 11 6 2.1975 -1.2688 0.0006 12 1 3.2728 -1.0917 0.0129 13 6 1.7724 -2.1468 1.2043 14 7 2.0919 -3.5254 0.7467 15 6 1.3393 -4.5245 1.5170 16 6 1.7247 -3.5734 -0.6852 17 6 0.3019 -4.1141 -0.8406 18 6 2.7066 -4.4635 -1.4497 19 6 1.7990 -2.1309 -1.2193 20 1 -0.3633 0.0984 -1.0230 21 1 -0.3634 0.8368 0.5966 22 1 -0.3634 -0.9351 0.4264 23 1 -0.1103 3.0954 -1.2816 24 1 2.3506 -1.8890 2.0917 25 1 0.7044 -2.0447 1.3968 26 1 1.5596 -5.5206 1.1329 27 1 1.6286 -4.4676 2.5663 28 1 0.2716 -4.3269 1.4232 29 1 0.0232 -4.1062 -1.8943 30 1 0.2575 -5.1347 -0.4605 31 1 -0.3889 -3.4864 -0.2775 32 1 3.7197 -4.0834 -1.3183 33 1 2.6481 -5.4821 -1.0661 34 1 2.4515 -4.4591 -2.5095 35 1 0.8274 -1.8187 -1.6021 36 1 2.5553 -2.0536 -2.0003 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694096601.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:33 Heat of formation + Delta-G solvation = 13.953333 kcal Electronic energy + Delta-G solvation = -15248.735697 eV Core-core repulsion = 12961.027834 eV Total energy + Delta-G solvation = -2287.707864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.79134 -37.14807 -33.71554 -33.19988 -30.96837 -28.28760 -28.00311 -26.54643 -25.85988 -24.15608 -20.92171 -19.63840 -18.90617 -17.22934 -16.65645 -16.07476 -15.53004 -15.22688 -14.79539 -14.46490 -14.35631 -13.87292 -13.80344 -13.32097 -13.06321 -12.70504 -12.64394 -12.54783 -12.38790 -12.23872 -12.09139 -12.01432 -11.94702 -11.83325 -11.53114 -11.20985 -10.60314 -9.28623 -8.75032 -7.84453 -5.32789 1.46083 1.48709 1.55146 2.48436 3.03549 3.30436 3.68311 3.83357 4.02489 4.12694 4.27574 4.41063 4.52719 4.57678 4.63017 4.66059 4.78018 4.87053 4.94117 4.98541 5.03914 5.06633 5.10758 5.21321 5.26832 5.34639 5.41559 5.53921 5.62671 5.74200 6.02527 6.25489 6.34605 7.16276 7.86953 8.32214 9.19051 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051110 B = 0.008223 C = 0.008165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.709551 B = 3404.452040 C = 3428.280268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.610 5.610 3 C -0.267 4.267 4 H 0.071 0.929 5 C -0.051 4.051 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.277 1.277 9 H -0.293 1.293 10 H -0.276 1.276 11 C 0.170 3.830 12 H 0.063 0.937 13 C 0.030 3.970 14 N -0.516 5.516 15 C 0.015 3.985 16 C 0.087 3.913 17 C -0.159 4.159 18 C -0.119 4.119 19 C -0.133 4.133 20 H -0.002 1.002 21 H 0.023 0.977 22 H 0.016 0.984 23 H 0.248 0.752 24 H 0.072 0.928 25 H 0.035 0.965 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.030 0.970 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.801 -13.416 1.357 13.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.333 5.333 3 C -0.397 4.397 4 H 0.089 0.911 5 C -0.245 4.245 6 N -0.586 5.586 7 Si 0.799 3.201 8 H -0.203 1.203 9 H -0.219 1.219 10 H -0.202 1.202 11 C 0.062 3.938 12 H 0.081 0.919 13 C -0.099 4.099 14 N -0.240 5.240 15 C -0.133 4.133 16 C -0.002 4.002 17 C -0.217 4.217 18 C -0.176 4.176 19 C -0.173 4.173 20 H 0.016 0.984 21 H 0.042 0.958 22 H 0.034 0.966 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.246 -13.402 1.382 13.659 hybrid contribution -0.750 1.459 -0.243 1.658 sum 1.496 -11.943 1.140 12.090 Atomic orbital electron populations 1.20440 0.82881 0.95040 0.97095 1.44085 1.01939 1.01158 1.86117 1.19550 0.99277 0.87534 1.33368 0.91147 1.25922 0.97489 1.02047 0.99057 1.70262 1.12434 1.28498 1.47452 0.85283 0.77844 0.78926 0.78032 1.20280 1.21933 1.20200 1.21333 0.95135 0.84569 0.92732 0.91901 1.23552 0.98531 0.89020 0.98831 1.64796 1.53654 1.03133 1.02442 1.22591 0.95953 0.96199 0.98589 1.21817 0.94854 0.94623 0.88936 1.22354 0.95773 1.01348 1.02267 1.21672 0.98260 0.98816 0.98878 1.22965 1.00879 0.94441 0.99030 0.98411 0.95827 0.96608 0.94258 0.90957 0.94635 0.89831 0.91287 0.95164 0.91818 0.90305 0.94355 0.92780 0.91526 0.91797 0.93241 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.84 7.67 127.77 0.98 10.82 16 2 N -0.61 -31.68 2.94 -696.04 -2.05 -33.73 16 3 C -0.27 -15.08 9.61 84.04 0.81 -14.27 16 4 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 5 C -0.05 -2.88 5.38 84.86 0.46 -2.43 16 6 N -0.94 -56.39 10.12 21.65 0.22 -56.17 16 7 Si 0.97 45.72 29.56 68.60 2.03 47.75 16 8 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 9 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 C 0.17 7.29 3.54 46.20 0.16 7.45 16 12 H 0.06 2.78 7.94 -2.39 -0.02 2.76 16 13 C 0.03 1.11 6.10 86.61 0.53 1.64 16 14 N -0.52 -15.66 5.18 -859.40 -4.45 -20.11 16 15 C 0.02 0.36 8.32 127.69 1.06 1.42 16 16 C 0.09 2.57 0.89 3.67 0.00 2.58 16 17 C -0.16 -4.15 6.97 71.98 0.50 -3.64 16 18 C -0.12 -2.88 8.63 71.98 0.62 -2.26 16 19 C -0.13 -5.01 5.82 31.48 0.18 -4.82 16 20 H 0.00 -0.14 7.39 -2.39 -0.02 -0.15 16 21 H 0.02 1.32 7.02 -2.38 -0.02 1.30 16 22 H 0.02 0.72 6.19 -2.39 -0.01 0.70 16 23 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 24 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 25 H 0.04 1.37 6.01 -2.39 -0.01 1.35 16 26 H 0.08 1.65 7.75 -2.39 -0.02 1.64 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.03 0.73 6.28 -2.39 -0.02 0.72 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 1.67 6.69 -2.39 -0.02 1.65 16 31 H 0.04 1.12 7.59 -2.38 -0.02 1.10 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.05 2.06 6.61 -2.39 -0.02 2.05 16 36 H 0.06 2.28 7.69 -2.39 -0.02 2.26 16 Total: -1.00 -62.02 274.20 2.09 -59.94 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.03 Total: 5.85 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.31 Total: -3.52 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -6.28 Total: -110.00 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -62.02 2.09 -59.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694096601.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.889 kcal (2) G-P(sol) polarization free energy of solvation -62.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds