Wall clock time and date at job start Mon Mar 30 2020 03:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36934 * 119.99768 * 2 1 4 4 H 1.08005 * 119.99985 * 203.83742 * 3 2 1 5 5 C 1.38814 * 120.00287 * 23.83418 * 3 2 1 6 6 N 1.31618 * 119.99911 * 10.90982 * 5 3 2 7 7 Si 1.86804 * 119.99984 * 190.90936 * 5 3 2 8 8 H 1.48500 * 109.47018 * 89.99820 * 7 5 3 9 9 H 1.48497 * 109.46722 * 209.99970 * 7 5 3 10 10 H 1.48502 * 109.47109 * 329.99646 * 7 5 3 11 11 C 1.46503 * 119.99998 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.78390 * 181.79791 * 11 2 1 13 13 C 1.54935 * 110.71987 * 58.55295 * 11 2 1 14 14 N 1.48532 * 103.37490 * 204.30847 * 13 11 2 15 15 C 1.46899 * 111.00418 * 159.63786 * 14 13 11 16 16 C 1.47904 * 105.82007 * 39.12114 * 14 13 11 17 17 C 1.53003 * 109.91770 * 94.02531 * 16 14 13 18 18 C 1.53002 * 109.91999 * 215.31566 * 16 14 13 19 19 C 1.53993 * 107.05849 * 334.66910 * 16 14 13 20 20 H 1.09006 * 109.47452 * 274.88640 * 1 2 3 21 21 H 1.09001 * 109.47434 * 34.89583 * 1 2 3 22 22 H 1.09000 * 109.47205 * 154.89452 * 1 2 3 23 23 H 0.97000 * 120.00010 * 180.02562 * 6 5 3 24 24 H 1.09002 * 110.67038 * 85.79060 * 13 11 2 25 25 H 1.08995 * 110.66946 * 322.82370 * 13 11 2 26 26 H 1.08993 * 109.47102 * 60.11980 * 15 14 13 27 27 H 1.09000 * 109.47275 * 180.12801 * 15 14 13 28 28 H 1.09006 * 109.46673 * 300.12805 * 15 14 13 29 29 H 1.08997 * 109.47089 * 61.45048 * 17 16 14 30 30 H 1.08994 * 109.47205 * 181.45769 * 17 16 14 31 31 H 1.08998 * 109.46723 * 301.45131 * 17 16 14 32 32 H 1.09005 * 109.46931 * 58.54730 * 18 16 14 33 33 H 1.09000 * 109.47540 * 178.54502 * 18 16 14 34 34 H 1.09000 * 109.47194 * 298.55370 * 18 16 14 35 35 H 1.09004 * 110.30748 * 120.13640 * 19 16 14 36 36 H 1.08998 * 110.30811 * 242.20925 * 19 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1605 1.2258 -0.3780 5 6 1.5443 2.3368 0.4858 6 7 0.4049 2.2554 1.1396 7 14 2.3469 4.0012 0.2116 8 1 1.8588 4.5818 -1.0651 9 1 1.9987 4.9094 1.3336 10 1 3.8213 3.8353 0.1483 11 6 2.1975 -1.2688 0.0006 12 1 3.2730 -1.0944 0.0325 13 6 1.8168 -2.1220 -1.2353 14 7 2.1193 -3.5099 -0.8011 15 6 1.3950 -4.4885 -1.6231 16 6 1.6972 -3.5906 0.6142 17 6 0.2683 -4.1306 0.7019 18 6 2.6507 -4.5002 1.3915 19 6 1.7538 -2.1613 1.1847 20 1 -0.3634 0.0875 1.0240 21 1 -0.3634 0.8429 -0.5879 22 1 -0.3633 -0.9306 -0.4360 23 1 -0.0183 3.0596 1.4787 24 1 2.4268 -1.8466 -2.0957 25 1 0.7571 -2.0136 -1.4661 26 1 1.6922 -4.3779 -2.6658 27 1 1.6328 -5.4962 -1.2823 28 1 0.3224 -4.3174 -1.5309 29 1 0.2331 -5.1353 0.2810 30 1 -0.0445 -4.1626 1.7455 31 1 -0.4016 -3.4783 0.1418 32 1 3.6657 -4.1094 1.3190 33 1 2.3483 -4.5340 2.4382 34 1 2.6176 -5.5053 0.9711 35 1 0.7688 -1.8553 1.5371 36 1 2.4793 -2.1065 1.9963 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694096603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:36 Heat of formation + Delta-G solvation = 30.509455 kcal Electronic energy + Delta-G solvation = -15242.365653 eV Core-core repulsion = 12955.375717 eV Total energy + Delta-G solvation = -2286.989936 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.39527 -35.27139 -31.95639 -31.78024 -29.24624 -27.09041 -25.97060 -25.18285 -24.36081 -22.41448 -19.19714 -18.35544 -16.83494 -15.37241 -15.28113 -14.41446 -14.14323 -13.65576 -13.29553 -12.99315 -12.66795 -12.31380 -12.23989 -12.07732 -11.47995 -11.39305 -11.14104 -10.86209 -10.72300 -10.71787 -10.39702 -10.36751 -10.23992 -10.07872 -9.77658 -9.59090 -8.51768 -7.99360 -6.70098 -5.69318 -3.16695 3.40325 3.46384 3.47926 4.32055 4.56517 5.07365 5.21825 5.35937 5.49126 5.52581 5.66843 5.73936 5.77943 5.87065 5.93115 5.96820 6.04283 6.06705 6.18841 6.25222 6.33948 6.43479 6.57291 6.68119 6.78623 6.93186 6.99630 7.35014 7.44148 7.50187 7.76525 7.83771 8.44098 9.27246 9.90455 10.40225 11.35301 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052258 B = 0.008186 C = 0.008091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.678423 B = 3419.704296 C = 3459.693829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.591 5.591 3 C -0.254 4.254 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.909 5.909 7 Si 0.906 3.094 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.181 3.819 12 H 0.073 0.927 13 C 0.017 3.983 14 N -0.514 5.514 15 C 0.016 3.984 16 C 0.085 3.915 17 C -0.164 4.164 18 C -0.123 4.123 19 C -0.139 4.139 20 H 0.030 0.970 21 H 0.041 0.959 22 H -0.004 1.004 23 H 0.252 0.748 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 -11.755 -1.858 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.312 5.312 3 C -0.384 4.384 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.554 5.554 7 Si 0.736 3.264 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.071 3.929 12 H 0.092 0.908 13 C -0.113 4.113 14 N -0.238 5.238 15 C -0.133 4.133 16 C -0.004 4.004 17 C -0.222 4.222 18 C -0.181 4.181 19 C -0.179 4.179 20 H 0.048 0.952 21 H 0.059 0.941 22 H 0.014 0.986 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.208 -11.708 -1.844 11.914 hybrid contribution -0.657 1.054 -0.038 1.242 sum 0.551 -10.654 -1.882 10.833 Atomic orbital electron populations 1.20734 0.82871 0.95142 0.99269 1.43898 1.01705 1.00250 1.85327 1.19256 0.98813 0.85643 1.34652 0.91327 1.25061 0.97823 0.98612 0.98176 1.70062 1.18695 1.27243 1.39395 0.86229 0.78886 0.84056 0.77224 1.21548 1.21774 1.20447 1.21188 0.96105 0.85390 0.90244 0.90828 1.23788 0.99390 0.87733 1.00358 1.64761 1.53151 1.04162 1.01677 1.22505 0.96536 0.96424 0.97846 1.21791 0.92782 0.96464 0.89407 1.22397 0.97412 1.00501 1.01932 1.21712 0.99640 0.98385 0.98398 1.23119 1.02385 0.92474 0.99949 0.95183 0.94067 0.98571 0.93808 0.90939 0.93779 0.92145 0.92103 0.95151 0.92745 0.92414 0.92653 0.92078 0.92900 0.93506 0.91099 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.10 7.60 59.84 0.45 4.56 16 2 N -0.59 -15.02 2.94 -171.25 -0.50 -15.52 16 3 C -0.25 -7.06 9.61 -15.06 -0.14 -7.21 16 4 H 0.07 1.87 7.85 -52.48 -0.41 1.46 16 5 C 0.00 0.04 5.14 -17.43 -0.09 -0.05 16 6 N -0.91 -26.71 10.65 55.49 0.59 -26.12 16 7 Si 0.91 22.07 29.57 -169.99 -5.03 17.04 16 8 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.18 3.85 3.55 -65.97 -0.23 3.62 16 12 H 0.07 1.62 7.95 -51.93 -0.41 1.21 16 13 C 0.02 0.32 6.07 -1.90 -0.01 0.31 16 14 N -0.51 -8.37 5.18 -223.16 -1.16 -9.52 16 15 C 0.02 0.22 8.32 60.06 0.50 0.72 16 16 C 0.09 1.35 0.89 -130.53 -0.12 1.23 16 17 C -0.16 -2.34 6.97 37.16 0.26 -2.08 16 18 C -0.12 -1.70 8.63 37.16 0.32 -1.38 16 19 C -0.14 -2.65 5.83 -25.28 -0.15 -2.80 16 20 H 0.03 0.81 7.26 -51.93 -0.38 0.43 16 21 H 0.04 1.11 7.33 -51.93 -0.38 0.72 16 22 H 0.00 -0.09 6.34 -51.93 -0.33 -0.42 16 23 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 25 H 0.04 0.86 6.18 -51.93 -0.32 0.54 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.74 7.86 -51.93 -0.41 0.33 16 28 H 0.03 0.41 6.16 -51.93 -0.32 0.09 16 29 H 0.05 0.68 6.66 -51.93 -0.35 0.34 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.86 7.63 -51.93 -0.40 0.46 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 1.47 6.49 -51.93 -0.34 1.13 16 36 H 0.06 1.18 7.69 -51.93 -0.40 0.78 16 LS Contribution 274.82 15.07 4.14 4.14 Total: -1.00 -29.00 274.82 -7.27 -36.27 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.11 Total: -3.22 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 0.79 Total: -3.08 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: -1.07 Total: -51.16 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.00 -7.27 -36.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694096603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.784 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds