Wall clock time and date at job start Mon Mar 30 2020 03:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36934 * 119.99768 * 2 1 4 4 H 1.08005 * 119.99985 * 203.83742 * 3 2 1 5 5 C 1.38814 * 120.00287 * 23.83418 * 3 2 1 6 6 N 1.31618 * 119.99911 * 10.90982 * 5 3 2 7 7 Si 1.86804 * 119.99984 * 190.90936 * 5 3 2 8 8 H 1.48500 * 109.47018 * 89.99820 * 7 5 3 9 9 H 1.48497 * 109.46722 * 209.99970 * 7 5 3 10 10 H 1.48502 * 109.47109 * 329.99646 * 7 5 3 11 11 C 1.46503 * 119.99998 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.78390 * 181.79791 * 11 2 1 13 13 C 1.54935 * 110.71987 * 58.55295 * 11 2 1 14 14 N 1.48532 * 103.37490 * 204.30847 * 13 11 2 15 15 C 1.46899 * 111.00418 * 159.63786 * 14 13 11 16 16 C 1.47904 * 105.82007 * 39.12114 * 14 13 11 17 17 C 1.53003 * 109.91770 * 94.02531 * 16 14 13 18 18 C 1.53002 * 109.91999 * 215.31566 * 16 14 13 19 19 C 1.53993 * 107.05849 * 334.66910 * 16 14 13 20 20 H 1.09006 * 109.47452 * 274.88640 * 1 2 3 21 21 H 1.09001 * 109.47434 * 34.89583 * 1 2 3 22 22 H 1.09000 * 109.47205 * 154.89452 * 1 2 3 23 23 H 0.97000 * 120.00010 * 180.02562 * 6 5 3 24 24 H 1.09002 * 110.67038 * 85.79060 * 13 11 2 25 25 H 1.08995 * 110.66946 * 322.82370 * 13 11 2 26 26 H 1.08993 * 109.47102 * 60.11980 * 15 14 13 27 27 H 1.09000 * 109.47275 * 180.12801 * 15 14 13 28 28 H 1.09006 * 109.46673 * 300.12805 * 15 14 13 29 29 H 1.08997 * 109.47089 * 61.45048 * 17 16 14 30 30 H 1.08994 * 109.47205 * 181.45769 * 17 16 14 31 31 H 1.08998 * 109.46723 * 301.45131 * 17 16 14 32 32 H 1.09005 * 109.46931 * 58.54730 * 18 16 14 33 33 H 1.09000 * 109.47540 * 178.54502 * 18 16 14 34 34 H 1.09000 * 109.47194 * 298.55370 * 18 16 14 35 35 H 1.09004 * 110.30748 * 120.13640 * 19 16 14 36 36 H 1.08998 * 110.30811 * 242.20925 * 19 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1605 1.2258 -0.3780 5 6 1.5443 2.3368 0.4858 6 7 0.4049 2.2554 1.1396 7 14 2.3469 4.0012 0.2116 8 1 1.8588 4.5818 -1.0651 9 1 1.9987 4.9094 1.3336 10 1 3.8213 3.8353 0.1483 11 6 2.1975 -1.2688 0.0006 12 1 3.2730 -1.0944 0.0325 13 6 1.8168 -2.1220 -1.2353 14 7 2.1193 -3.5099 -0.8011 15 6 1.3950 -4.4885 -1.6231 16 6 1.6972 -3.5906 0.6142 17 6 0.2683 -4.1306 0.7019 18 6 2.6507 -4.5002 1.3915 19 6 1.7538 -2.1613 1.1847 20 1 -0.3634 0.0875 1.0240 21 1 -0.3634 0.8429 -0.5879 22 1 -0.3633 -0.9306 -0.4360 23 1 -0.0183 3.0596 1.4787 24 1 2.4268 -1.8466 -2.0957 25 1 0.7571 -2.0136 -1.4661 26 1 1.6922 -4.3779 -2.6658 27 1 1.6328 -5.4962 -1.2823 28 1 0.3224 -4.3174 -1.5309 29 1 0.2331 -5.1353 0.2810 30 1 -0.0445 -4.1626 1.7455 31 1 -0.4016 -3.4783 0.1418 32 1 3.6657 -4.1094 1.3190 33 1 2.3483 -4.5340 2.4382 34 1 2.6176 -5.5053 0.9711 35 1 0.7688 -1.8553 1.5371 36 1 2.4793 -2.1065 1.9963 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694096603.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:35 Heat of formation + Delta-G solvation = 11.818861 kcal Electronic energy + Delta-G solvation = -15243.176138 eV Core-core repulsion = 12955.375717 eV Total energy + Delta-G solvation = -2287.800421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.80268 -37.14901 -33.70528 -33.20164 -31.00192 -28.30052 -27.99213 -26.53806 -25.88703 -24.16942 -20.93750 -19.63651 -18.88145 -17.21729 -16.66498 -16.09734 -15.53460 -15.24126 -14.78423 -14.47475 -14.40523 -13.86530 -13.81509 -13.33859 -12.97002 -12.83858 -12.63075 -12.55422 -12.37817 -12.24214 -12.10049 -12.01456 -11.93129 -11.82569 -11.54018 -11.20444 -10.64405 -9.28686 -8.76901 -7.83363 -5.33425 1.46334 1.47269 1.56470 2.48866 3.04681 3.29430 3.67288 3.83214 4.01916 4.12018 4.27372 4.41269 4.52665 4.57115 4.62137 4.66350 4.78123 4.85142 4.93942 4.98620 5.03532 5.06294 5.10721 5.20837 5.22638 5.34080 5.36614 5.53616 5.62572 5.67993 6.02699 6.25641 6.33335 7.14408 7.85954 8.31007 9.19646 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052258 B = 0.008186 C = 0.008091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.678423 B = 3419.704296 C = 3459.693829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.186 3.814 2 N -0.606 5.606 3 C -0.266 4.266 4 H 0.070 0.930 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.971 3.029 8 H -0.286 1.286 9 H -0.294 1.294 10 H -0.268 1.268 11 C 0.170 3.830 12 H 0.062 0.938 13 C 0.031 3.969 14 N -0.516 5.516 15 C 0.014 3.986 16 C 0.087 3.913 17 C -0.159 4.159 18 C -0.119 4.119 19 C -0.133 4.133 20 H 0.004 0.996 21 H 0.014 0.986 22 H 0.022 0.978 23 H 0.248 0.752 24 H 0.072 0.928 25 H 0.035 0.965 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.395 -13.403 -2.335 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.328 5.328 3 C -0.396 4.396 4 H 0.088 0.912 5 C -0.248 4.248 6 N -0.586 5.586 7 Si 0.800 3.200 8 H -0.212 1.212 9 H -0.221 1.221 10 H -0.193 1.193 11 C 0.062 3.938 12 H 0.080 0.920 13 C -0.099 4.099 14 N -0.240 5.240 15 C -0.134 4.134 16 C -0.002 4.002 17 C -0.217 4.217 18 C -0.176 4.176 19 C -0.174 4.174 20 H 0.022 0.978 21 H 0.032 0.968 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.860 -13.399 -2.333 13.728 hybrid contribution -0.826 1.497 0.101 1.713 sum 1.034 -11.902 -2.233 12.154 Atomic orbital electron populations 1.20389 0.83000 0.95202 0.97307 1.44083 1.01876 1.01189 1.85676 1.19581 0.98998 0.86901 1.34098 0.91235 1.25840 0.98567 1.02013 0.98348 1.70229 1.20037 1.27740 1.40557 0.85201 0.78464 0.79608 0.76777 1.21250 1.22054 1.19283 1.21354 0.95115 0.84615 0.92742 0.91992 1.23509 0.98629 0.88950 0.98791 1.64804 1.53867 1.03115 1.02204 1.22608 0.96357 0.96532 0.97938 1.21821 0.94605 0.94634 0.89186 1.22348 0.95706 1.01315 1.02379 1.21669 0.98458 0.98675 0.98826 1.22997 1.00886 0.94485 0.98988 0.97809 0.96758 0.95929 0.94271 0.90992 0.94672 0.91333 0.89848 0.94970 0.90279 0.91788 0.94274 0.92838 0.91822 0.91511 0.93144 0.92158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.51 7.60 127.77 0.97 10.48 16 2 N -0.61 -31.34 2.94 -695.70 -2.04 -33.39 16 3 C -0.27 -14.98 9.61 84.03 0.81 -14.17 16 4 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 5 C -0.05 -3.01 5.14 84.86 0.44 -2.57 16 6 N -0.94 -56.51 10.65 21.65 0.23 -56.28 16 7 Si 0.97 45.82 29.57 68.60 2.03 47.85 16 8 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 9 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 C 0.17 7.26 3.55 46.26 0.16 7.42 16 12 H 0.06 2.75 7.95 -2.39 -0.02 2.74 16 13 C 0.03 1.13 6.07 86.65 0.53 1.66 16 14 N -0.52 -15.59 5.18 -859.94 -4.45 -20.04 16 15 C 0.01 0.33 8.32 127.69 1.06 1.39 16 16 C 0.09 2.56 0.89 3.67 0.00 2.57 16 17 C -0.16 -4.12 6.97 71.98 0.50 -3.62 16 18 C -0.12 -2.90 8.63 71.98 0.62 -2.28 16 19 C -0.13 -5.03 5.83 31.54 0.18 -4.85 16 20 H 0.00 0.21 7.26 -2.38 -0.02 0.19 16 21 H 0.01 0.77 7.33 -2.39 -0.02 0.75 16 22 H 0.02 1.01 6.34 -2.39 -0.02 0.99 16 23 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 24 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.04 1.34 6.18 -2.39 -0.01 1.32 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 1.64 7.86 -2.39 -0.02 1.62 16 28 H 0.03 0.77 6.16 -2.38 -0.01 0.75 16 29 H 0.08 1.67 6.66 -2.39 -0.02 1.65 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.04 1.13 7.63 -2.39 -0.02 1.12 16 32 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.05 2.10 6.49 -2.38 -0.02 2.08 16 36 H 0.06 2.25 7.69 -2.39 -0.02 2.23 16 Total: -1.00 -62.23 274.82 2.07 -60.17 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: 1.03 Total: 5.65 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 5.28 Total: -3.97 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -6.26 Total: -109.70 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -62.23 2.07 -60.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694096603.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.986 kcal (2) G-P(sol) polarization free energy of solvation -62.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds