Wall clock time and date at job start Mon Mar 30 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00075 * 2 1 4 4 H 1.48501 * 109.47461 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47234 * 300.00199 * 3 2 1 6 6 H 1.48507 * 109.46908 * 60.00177 * 3 2 1 7 7 C 1.37881 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99632 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99974 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47276 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00323 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47529 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47398 * 179.97438 * 12 11 10 14 14 C 1.53120 * 109.52343 * 184.99571 * 13 12 11 15 15 C 1.53042 * 109.27821 * 182.43872 * 14 13 12 16 16 N 1.46848 * 109.52160 * 59.18425 * 15 14 13 17 17 C 1.46847 * 111.19556 * 298.25623 * 16 15 14 18 18 C 1.53034 * 109.52616 * 61.74332 * 17 16 15 19 19 H 0.97000 * 119.99888 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.47225 * 60.00509 * 9 7 2 21 21 H 1.08992 * 109.47581 * 300.00797 * 9 7 2 22 22 H 1.00902 * 111.00141 * 303.95670 * 10 9 7 23 23 H 1.08993 * 109.47268 * 59.99678 * 11 10 9 24 24 H 1.08998 * 109.46943 * 299.99758 * 11 10 9 25 25 H 1.09003 * 109.47427 * 59.99303 * 12 11 10 26 26 H 1.09008 * 109.46614 * 299.99703 * 12 11 10 27 27 H 1.08996 * 109.57542 * 305.15898 * 13 12 11 28 28 H 1.08997 * 109.49895 * 62.50324 * 14 13 12 29 29 H 1.08998 * 109.50437 * 302.38327 * 14 13 12 30 30 H 1.08995 * 109.46577 * 299.16647 * 15 14 13 31 31 H 1.08994 * 109.45929 * 179.19867 * 15 14 13 32 32 H 1.00901 * 111.00066 * 62.35005 * 16 15 14 33 33 H 1.09000 * 109.46087 * 181.75730 * 17 16 15 34 34 H 1.09004 * 109.46240 * 301.72671 * 17 16 15 35 35 H 1.08998 * 109.50577 * 180.88107 * 18 17 16 36 36 H 1.09000 * 109.50061 * 60.76065 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 6 2.5304 -6.0430 -0.0005 13 6 1.8011 -7.3880 -0.0005 14 6 2.8209 -8.5231 0.1259 15 6 2.0913 -9.8670 0.0641 16 7 1.3678 -9.9745 -1.2092 17 6 0.3503 -8.9228 -1.3322 18 6 1.0278 -7.5508 -1.3120 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8895 22 1 2.8406 -3.5486 -0.7819 23 1 0.8809 -4.9812 -0.8913 24 1 0.8803 -4.9817 0.8886 25 1 3.1547 -5.9687 0.8899 26 1 3.1559 -5.9685 -0.8901 27 1 1.1068 -7.4269 0.8388 28 1 3.3450 -8.4370 1.0776 29 1 3.5383 -8.4605 -0.6923 30 1 1.3840 -9.9346 0.8906 31 1 2.8162 -10.6775 0.1395 32 1 2.0059 -9.9534 -1.9906 33 1 -0.1894 -9.0476 -2.2709 34 1 -0.3490 -8.9948 -0.4991 35 1 0.2710 -6.7700 -1.3876 36 1 1.7170 -7.4729 -2.1529 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695274094.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:02 Heat of formation + Delta-G solvation = -28.071016 kcal Electronic energy + Delta-G solvation = -14017.601697 eV Core-core repulsion = 11728.071521 eV Total energy + Delta-G solvation = -2289.530176 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.15012 -35.79002 -33.45778 -32.05173 -30.94961 -28.56922 -25.93012 -23.48447 -22.85972 -21.44892 -20.89463 -20.07630 -16.38650 -16.15172 -15.13998 -14.78411 -14.75986 -14.38521 -14.22026 -13.53243 -13.27496 -12.86754 -12.42390 -12.24118 -11.81379 -11.67752 -11.34057 -11.13788 -11.10854 -10.80869 -10.68025 -10.59843 -10.38887 -10.12099 -9.84817 -9.15574 -8.50236 -8.47150 -7.26848 -6.03299 -4.05280 3.30812 3.37831 3.43231 4.16707 4.42611 4.60258 4.72085 4.91965 5.03650 5.25290 5.28167 5.32420 5.34638 5.44814 5.65107 5.69242 5.77123 5.83118 5.91656 5.93549 6.03433 6.08722 6.18362 6.31175 6.55941 6.58839 6.86627 7.20342 7.26510 7.42684 7.79338 8.13455 8.40954 8.63032 9.04524 9.59776 11.07969 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.079477 B = 0.004637 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.217082 B = 6037.377013 C = 6241.397409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.692 5.692 11 C 0.059 3.941 12 C -0.109 4.109 13 C -0.085 4.085 14 C -0.152 4.152 15 C 0.056 3.944 16 N -0.689 5.689 17 C 0.055 3.945 18 C -0.155 4.155 19 H 0.261 0.739 20 H -0.015 1.015 21 H 0.027 0.973 22 H 0.327 0.673 23 H 0.018 0.982 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.338 0.662 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 -17.397 -1.979 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.322 5.322 11 C -0.071 4.071 12 C -0.147 4.147 13 C -0.104 4.104 14 C -0.191 4.191 15 C -0.074 4.074 16 N -0.317 5.317 17 C -0.074 4.074 18 C -0.194 4.194 19 H 0.070 0.930 20 H 0.003 0.997 21 H 0.045 0.955 22 H 0.143 0.857 23 H 0.036 0.964 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.155 0.845 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.597 -17.745 -1.047 17.965 hybrid contribution 0.575 1.838 -1.056 2.196 sum 3.172 -15.907 -2.103 16.356 Atomic orbital electron populations 1.69976 1.06109 1.26674 1.51049 1.25005 0.94884 0.99410 0.95344 0.86423 0.80063 0.83297 0.77518 1.19644 1.21078 1.20955 1.21244 0.93559 0.90285 1.50164 0.91921 1.19552 0.90639 0.87502 0.95686 1.60668 1.21282 1.01491 1.48787 1.21915 0.95398 0.90235 0.99539 1.21611 0.98217 0.92872 1.02034 1.21155 0.96951 0.94579 0.97736 1.22310 0.98455 0.95924 1.02406 1.22025 0.96973 0.95825 0.92556 1.60698 1.18157 1.48225 1.04591 1.22040 0.94554 0.88562 1.02270 1.22365 1.00388 0.98846 0.97764 0.92966 0.99710 0.95506 0.85733 0.96403 0.92121 0.91407 0.92662 0.91156 0.91396 0.92115 0.91021 0.91012 0.84460 0.90924 0.90987 0.90882 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.92 9.32 -34.44 -0.32 -15.24 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 5.23 5.44 -4.98 -0.03 5.20 16 10 N -0.69 -15.38 6.49 -115.07 -0.75 -16.13 16 11 C 0.06 1.07 5.45 -3.82 -0.02 1.05 16 12 C -0.11 -1.56 4.95 -26.73 -0.13 -1.70 16 13 C -0.09 -1.00 2.25 -90.50 -0.20 -1.21 16 14 C -0.15 -1.51 5.36 -26.65 -0.14 -1.66 16 15 C 0.06 0.51 6.55 -3.83 -0.03 0.49 16 16 N -0.69 -6.65 6.87 -113.82 -0.78 -7.43 16 17 C 0.06 0.55 6.55 -3.84 -0.03 0.53 16 18 C -0.15 -1.73 5.06 -26.65 -0.13 -1.87 16 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 20 H -0.01 -0.43 8.14 -51.93 -0.42 -0.85 16 21 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.33 6.92 8.72 -39.29 -0.34 6.58 16 23 H 0.02 0.33 6.64 -51.93 -0.34 -0.02 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.34 2.93 8.86 -39.29 -0.35 2.59 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.91 6.71 -51.93 -0.35 0.56 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 286.79 15.07 4.32 4.32 Total: -1.00 -30.27 286.79 -9.05 -39.31 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.42 Total: 2.46 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -1.13 Total: -12.91 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.79 Total: -50.10 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.27 -9.05 -39.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695274094.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.240 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds