Wall clock time and date at job start Mon Mar 30 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00075 * 2 1 4 4 H 1.48501 * 109.47461 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47234 * 300.00199 * 3 2 1 6 6 H 1.48507 * 109.46908 * 60.00177 * 3 2 1 7 7 C 1.37881 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99632 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99974 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47276 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00323 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47529 * 180.02562 * 11 10 9 13 13 C 1.52993 * 109.47398 * 179.97438 * 12 11 10 14 14 C 1.53120 * 109.52343 * 184.99571 * 13 12 11 15 15 C 1.53042 * 109.27821 * 182.43872 * 14 13 12 16 16 N 1.46848 * 109.52160 * 59.18425 * 15 14 13 17 17 C 1.46847 * 111.19556 * 298.25623 * 16 15 14 18 18 C 1.53034 * 109.52616 * 61.74332 * 17 16 15 19 19 H 0.97000 * 119.99888 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.47225 * 60.00509 * 9 7 2 21 21 H 1.08992 * 109.47581 * 300.00797 * 9 7 2 22 22 H 1.00902 * 111.00141 * 303.95670 * 10 9 7 23 23 H 1.08993 * 109.47268 * 59.99678 * 11 10 9 24 24 H 1.08998 * 109.46943 * 299.99758 * 11 10 9 25 25 H 1.09003 * 109.47427 * 59.99303 * 12 11 10 26 26 H 1.09008 * 109.46614 * 299.99703 * 12 11 10 27 27 H 1.08996 * 109.57542 * 305.15898 * 13 12 11 28 28 H 1.08997 * 109.49895 * 62.50324 * 14 13 12 29 29 H 1.08998 * 109.50437 * 302.38327 * 14 13 12 30 30 H 1.08995 * 109.46577 * 299.16647 * 15 14 13 31 31 H 1.08994 * 109.45929 * 179.19867 * 15 14 13 32 32 H 1.00901 * 111.00066 * 62.35005 * 16 15 14 33 33 H 1.09000 * 109.46087 * 181.75730 * 17 16 15 34 34 H 1.09004 * 109.46240 * 301.72671 * 17 16 15 35 35 H 1.08998 * 109.50577 * 180.88107 * 18 17 16 36 36 H 1.09000 * 109.50061 * 60.76065 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5055 -4.9070 -0.0011 12 6 2.5304 -6.0430 -0.0005 13 6 1.8011 -7.3880 -0.0005 14 6 2.8209 -8.5231 0.1259 15 6 2.0913 -9.8670 0.0641 16 7 1.3678 -9.9745 -1.2092 17 6 0.3503 -8.9228 -1.3322 18 6 1.0278 -7.5508 -1.3120 19 1 -0.4850 0.8401 0.0004 20 1 0.6241 -2.5567 -0.8904 21 1 0.6247 -2.5571 0.8895 22 1 2.8406 -3.5486 -0.7819 23 1 0.8809 -4.9812 -0.8913 24 1 0.8803 -4.9817 0.8886 25 1 3.1547 -5.9687 0.8899 26 1 3.1559 -5.9685 -0.8901 27 1 1.1068 -7.4269 0.8388 28 1 3.3450 -8.4370 1.0776 29 1 3.5383 -8.4605 -0.6923 30 1 1.3840 -9.9346 0.8906 31 1 2.8162 -10.6775 0.1395 32 1 2.0059 -9.9534 -1.9906 33 1 -0.1894 -9.0476 -2.2709 34 1 -0.3490 -8.9948 -0.4991 35 1 0.2710 -6.7700 -1.3876 36 1 1.7170 -7.4729 -2.1529 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695274094.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:02 Heat of formation + Delta-G solvation = -50.073507 kcal Electronic energy + Delta-G solvation = -14018.555797 eV Core-core repulsion = 11728.071521 eV Total energy + Delta-G solvation = -2290.484276 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05902 -37.41326 -35.13149 -33.76654 -31.77018 -30.11912 -27.69619 -24.77864 -23.87354 -23.23483 -22.13123 -21.03843 -18.57787 -17.04733 -16.78390 -16.55617 -15.61475 -15.56548 -15.32830 -15.01524 -14.54515 -14.39299 -14.00083 -13.54927 -13.10484 -13.03498 -12.80374 -12.71830 -12.41991 -12.21274 -12.11771 -11.94123 -11.79624 -11.45240 -11.29453 -11.05077 -10.69464 -9.30551 -9.14099 -8.25752 -6.37824 1.39900 1.40856 1.55067 2.38226 3.07444 3.38007 3.50013 3.75193 3.88023 4.09870 4.16580 4.24141 4.44901 4.50092 4.51779 4.64275 4.66999 4.87034 4.88617 5.00167 5.02551 5.07529 5.12094 5.15443 5.19719 5.23744 5.34905 5.48021 5.58910 5.98276 6.09488 6.40524 6.50948 6.68789 6.85389 7.33674 8.86368 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.079477 B = 0.004637 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.217082 B = 6037.377013 C = 6241.397409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.207 3.793 10 N -0.692 5.692 11 C 0.060 3.940 12 C -0.096 4.096 13 C -0.081 4.081 14 C -0.145 4.145 15 C 0.058 3.942 16 N -0.691 5.691 17 C 0.060 3.940 18 C -0.151 4.151 19 H 0.266 0.734 20 H -0.040 1.040 21 H -0.003 1.003 22 H 0.334 0.666 23 H 0.017 0.983 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.346 0.654 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.056 0.944 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 -17.898 -2.248 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.079 3.921 10 N -0.322 5.322 11 C -0.069 4.069 12 C -0.134 4.134 13 C -0.101 4.101 14 C -0.184 4.184 15 C -0.071 4.071 16 N -0.320 5.320 17 C -0.070 4.070 18 C -0.190 4.190 19 H 0.075 0.925 20 H -0.023 1.023 21 H 0.015 0.985 22 H 0.151 0.849 23 H 0.036 0.964 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.164 0.836 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.971 -18.277 -1.322 18.750 hybrid contribution 0.114 1.943 -0.970 2.174 sum 4.086 -16.335 -2.292 16.993 Atomic orbital electron populations 1.70103 1.07917 1.28068 1.51448 1.26010 0.95827 1.03577 0.94399 0.85226 0.78891 0.77953 0.77856 1.18567 1.20128 1.20259 1.21589 0.93861 0.91404 1.50792 0.91655 1.19214 0.90702 0.89178 0.93027 1.60559 1.20601 1.01842 1.49204 1.21994 0.96326 0.89633 0.98971 1.21498 0.97180 0.92558 1.02191 1.21110 0.97242 0.93866 0.97850 1.22252 0.97900 0.95384 1.02855 1.22041 0.97101 0.95769 0.92222 1.60700 1.18414 1.47740 1.05130 1.21985 0.94593 0.87804 1.02577 1.22327 0.99990 0.99234 0.97478 0.92521 1.02286 0.98468 0.84869 0.96449 0.93195 0.91660 0.91984 0.91822 0.90955 0.91633 0.91390 0.89384 0.83640 0.90080 0.91432 0.92577 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.51 13.29 21.45 0.28 -57.23 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.98 44.75 29.54 68.60 2.03 46.78 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -31.56 9.32 25.60 0.24 -31.33 16 8 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 9 C 0.21 11.55 5.44 85.56 0.47 12.01 16 10 N -0.69 -31.09 6.49 -517.97 -3.36 -34.46 16 11 C 0.06 2.20 5.45 86.30 0.47 2.67 16 12 C -0.10 -2.67 4.95 30.59 0.15 -2.52 16 13 C -0.08 -1.83 2.25 -10.71 -0.02 -1.85 16 14 C -0.14 -2.57 5.36 30.65 0.16 -2.41 16 15 C 0.06 0.94 6.55 86.33 0.57 1.50 16 16 N -0.69 -11.88 6.87 -514.01 -3.53 -15.40 16 17 C 0.06 1.12 6.55 86.32 0.57 1.69 16 18 C -0.15 -3.25 5.06 30.65 0.16 -3.09 16 19 H 0.27 15.22 8.31 -92.71 -0.77 14.44 16 20 H -0.04 -2.42 8.14 -2.38 -0.02 -2.44 16 21 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 22 H 0.33 14.14 8.72 -89.69 -0.78 13.35 16 23 H 0.02 0.64 6.64 -2.39 -0.02 0.63 16 24 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.35 5.16 8.86 -89.69 -0.79 4.37 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.06 1.39 6.71 -2.39 -0.02 1.38 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -64.45 286.79 -1.90 -66.35 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -0.53 Total: 16.83 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 3.21 Total: -22.86 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -6.61 Total: -107.09 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.45 -1.90 -66.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695274094.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.274 kcal (2) G-P(sol) polarization free energy of solvation -64.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds