Wall clock time and date at job start Mon Mar 30 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47407 * 2 1 4 4 C 1.53002 * 109.47161 * 120.00370 * 2 1 3 5 5 C 1.50704 * 109.46766 * 184.99645 * 4 2 1 6 6 H 1.07997 * 120.00169 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99461 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99786 * 179.72613 * 7 5 4 9 9 Si 1.86800 * 120.00308 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46981 * 89.99964 * 9 7 5 11 11 H 1.48501 * 109.47159 * 209.99991 * 9 7 5 12 12 H 1.48499 * 109.46824 * 330.00190 * 9 7 5 13 13 O 1.42904 * 109.46831 * 240.00593 * 2 1 3 14 14 C 1.42896 * 114.00371 * 97.94967 * 13 2 1 15 15 C 1.52997 * 109.46990 * 265.17109 * 14 13 2 16 16 C 1.53004 * 109.47422 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46744 * 59.99785 * 16 15 14 18 18 C 1.52997 * 109.47049 * 300.00012 * 17 16 15 19 19 C 1.52993 * 109.47575 * 145.16956 * 14 13 2 20 20 H 1.09006 * 109.46374 * 297.82683 * 1 2 3 21 21 H 1.08997 * 109.47177 * 57.81998 * 1 2 3 22 22 H 1.08994 * 109.47136 * 177.82469 * 1 2 3 23 23 H 1.09006 * 109.46991 * 65.00204 * 4 2 1 24 24 H 1.08995 * 109.46874 * 304.99769 * 4 2 1 25 25 H 0.96996 * 120.00112 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.46915 * 25.16848 * 14 13 2 27 27 H 1.09001 * 109.47078 * 299.99638 * 15 14 13 28 28 H 1.09000 * 109.47300 * 59.99522 * 15 14 13 29 29 H 1.09001 * 109.46853 * 299.99966 * 16 15 14 30 30 H 1.08995 * 109.47381 * 179.97438 * 16 15 14 31 31 H 1.09006 * 109.46975 * 180.02562 * 17 16 15 32 32 H 1.09001 * 109.47298 * 60.00453 * 17 16 15 33 33 H 1.08996 * 109.47800 * 299.99720 * 18 17 16 34 34 H 1.09007 * 109.46881 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.47067 * 300.00467 * 19 14 13 36 36 H 1.08999 * 109.47095 * 59.99444 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0790 -0.0856 0.5395 7 6 4.2305 -1.1937 2.3576 8 7 5.5417 -1.1056 2.4101 9 14 3.3018 -2.1101 3.6944 10 1 3.1712 -3.5400 3.3152 11 1 4.0451 -2.0037 4.9755 12 1 1.9507 -1.5152 3.8551 13 8 2.0063 -0.6735 -1.1669 14 6 2.3703 0.2023 -2.2358 15 6 1.1885 0.3540 -3.1956 16 6 1.5779 1.2922 -4.3397 17 6 2.7750 0.7086 -5.0929 18 6 3.9567 0.5569 -4.1330 19 6 3.5671 -0.3819 -2.9888 20 1 -0.3632 0.4798 0.9089 21 1 -0.3633 0.5473 -0.8698 22 1 -0.3633 -1.0269 -0.0390 23 1 1.7517 -1.7717 1.2054 24 1 1.6055 -0.2618 2.1369 25 1 6.0261 -1.5124 3.1454 26 1 2.6370 1.1784 -1.8307 27 1 0.9217 -0.6222 -3.6006 28 1 0.3358 0.7701 -2.6591 29 1 1.8444 2.2683 -3.9344 30 1 0.7362 1.4000 -5.0238 31 1 3.0527 1.3772 -5.9077 32 1 2.5085 -0.2676 -5.4982 33 1 4.2233 1.5330 -3.7277 34 1 4.8097 0.1415 -4.6697 35 1 4.4090 -0.4900 -2.3049 36 1 3.3004 -1.3581 -3.3937 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695816197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:24 Heat of formation + Delta-G solvation = -82.655337 kcal Electronic energy + Delta-G solvation = -14760.684601 eV Core-core repulsion = 12436.494720 eV Total energy + Delta-G solvation = -2324.189881 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.82672 -36.41503 -33.05202 -31.49772 -30.54578 -28.91154 -27.83718 -22.92948 -22.34298 -21.85361 -20.21743 -19.37732 -16.68847 -16.25214 -15.18038 -14.39828 -14.32582 -14.02905 -13.63898 -13.24846 -12.69956 -12.45632 -12.19613 -12.17691 -11.85138 -11.67800 -11.60125 -10.95484 -10.81827 -10.73591 -10.56775 -10.38242 -10.10663 -9.85180 -9.69495 -9.53848 -9.12008 -8.58225 -8.46480 -5.96392 -3.92207 3.36040 3.42542 3.45559 4.33541 4.51674 4.91431 4.95308 5.12707 5.38499 5.43124 5.52385 5.59725 5.68613 5.70775 5.75088 5.79221 5.92878 5.95557 6.03098 6.12998 6.21961 6.30081 6.32178 6.36305 6.45372 6.62278 6.68290 6.73765 6.79521 7.21823 7.30219 7.84822 8.21538 8.62436 9.09199 9.65972 11.17405 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.040407 B = 0.008094 C = 0.006992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.781855 B = 3458.388644 C = 4003.449152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 H 0.052 0.948 4 C -0.017 4.017 5 C -0.505 4.505 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.267 1.267 13 O -0.362 6.362 14 C 0.094 3.906 15 C -0.141 4.141 16 C -0.117 4.117 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.119 4.119 20 H 0.057 0.943 21 H 0.045 0.955 22 H 0.056 0.944 23 H 0.020 0.980 24 H 0.026 0.974 25 H 0.261 0.739 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.929 4.053 -11.636 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.042 3.958 3 H 0.070 0.930 4 C -0.054 4.054 5 C -0.543 4.543 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.192 1.192 13 O -0.281 6.281 14 C 0.035 3.965 15 C -0.178 4.178 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.156 4.156 20 H 0.076 0.924 21 H 0.064 0.936 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.763 3.795 -11.535 14.413 hybrid contribution -0.415 -0.280 0.800 0.944 sum -8.178 3.514 -10.735 13.946 Atomic orbital electron populations 1.22405 0.98023 1.01809 1.00749 1.22192 0.90903 0.95893 0.86771 0.92980 1.19781 0.97813 0.96119 0.91684 1.21033 0.89609 1.34639 1.09039 0.91020 1.25005 0.94724 0.95987 0.97911 1.69915 1.06435 1.45910 1.32333 0.86803 0.80347 0.80721 0.81539 1.20334 1.21509 1.19161 1.87962 1.84162 1.33003 1.22928 1.22029 0.93095 0.93453 0.87877 1.22147 0.98879 0.99978 0.96838 1.21499 0.97756 0.98951 0.97212 1.21561 0.95555 1.00853 0.97760 1.21516 0.97494 1.00009 0.96384 1.21608 0.98249 0.98875 0.96888 0.92361 0.93552 0.92466 0.96188 0.95542 0.92909 0.92691 0.91597 0.92037 0.92144 0.92304 0.92408 0.92060 0.92025 0.91866 0.90559 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.56 37.16 0.36 -2.57 16 2 C 0.10 2.09 2.72 -26.73 -0.07 2.02 16 3 H 0.05 1.08 7.20 -51.93 -0.37 0.71 16 4 C -0.02 -0.41 3.75 -27.88 -0.10 -0.52 16 5 C -0.51 -14.76 9.43 -34.44 -0.32 -15.08 16 6 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 9 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 13 O -0.36 -7.69 9.38 -35.23 -0.33 -8.02 16 14 C 0.09 1.63 2.63 -26.74 -0.07 1.56 16 15 C -0.14 -1.99 5.57 -26.73 -0.15 -2.14 16 16 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 17 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 18 C -0.12 -1.51 5.92 -26.71 -0.16 -1.67 16 19 C -0.12 -1.95 5.58 -26.71 -0.15 -2.10 16 20 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 21 H 0.05 0.69 6.38 -51.93 -0.33 0.36 16 22 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 24 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.06 0.98 7.23 -51.93 -0.38 0.60 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.85 6.39 -51.93 -0.33 0.52 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 281.88 15.07 4.25 4.25 Total: -1.00 -31.09 281.88 -7.48 -38.57 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -6.42 Total: -2.96 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -1.09 Total: -21.72 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.77 Total: -27.70 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.33 Total: -8.02 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.09 -7.48 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.088 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds