Wall clock time and date at job start Mon Mar 30 2020 02:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47407 * 2 1 4 4 C 1.53002 * 109.47161 * 120.00370 * 2 1 3 5 5 C 1.50704 * 109.46766 * 184.99645 * 4 2 1 6 6 H 1.07997 * 120.00169 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99461 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99786 * 179.72613 * 7 5 4 9 9 Si 1.86800 * 120.00308 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46981 * 89.99964 * 9 7 5 11 11 H 1.48501 * 109.47159 * 209.99991 * 9 7 5 12 12 H 1.48499 * 109.46824 * 330.00190 * 9 7 5 13 13 O 1.42904 * 109.46831 * 240.00593 * 2 1 3 14 14 C 1.42896 * 114.00371 * 97.94967 * 13 2 1 15 15 C 1.52997 * 109.46990 * 265.17109 * 14 13 2 16 16 C 1.53004 * 109.47422 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46744 * 59.99785 * 16 15 14 18 18 C 1.52997 * 109.47049 * 300.00012 * 17 16 15 19 19 C 1.52993 * 109.47575 * 145.16956 * 14 13 2 20 20 H 1.09006 * 109.46374 * 297.82683 * 1 2 3 21 21 H 1.08997 * 109.47177 * 57.81998 * 1 2 3 22 22 H 1.08994 * 109.47136 * 177.82469 * 1 2 3 23 23 H 1.09006 * 109.46991 * 65.00204 * 4 2 1 24 24 H 1.08995 * 109.46874 * 304.99769 * 4 2 1 25 25 H 0.96996 * 120.00112 * 179.97438 * 8 7 5 26 26 H 1.09001 * 109.46915 * 25.16848 * 14 13 2 27 27 H 1.09001 * 109.47078 * 299.99638 * 15 14 13 28 28 H 1.09000 * 109.47300 * 59.99522 * 15 14 13 29 29 H 1.09001 * 109.46853 * 299.99966 * 16 15 14 30 30 H 1.08995 * 109.47381 * 179.97438 * 16 15 14 31 31 H 1.09006 * 109.46975 * 180.02562 * 17 16 15 32 32 H 1.09001 * 109.47298 * 60.00453 * 17 16 15 33 33 H 1.08996 * 109.47800 * 299.99720 * 18 17 16 34 34 H 1.09007 * 109.46881 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.47067 * 300.00467 * 19 14 13 36 36 H 1.08999 * 109.47095 * 59.99444 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6150 1.3126 6 1 4.0790 -0.0856 0.5395 7 6 4.2305 -1.1937 2.3576 8 7 5.5417 -1.1056 2.4101 9 14 3.3018 -2.1101 3.6944 10 1 3.1712 -3.5400 3.3152 11 1 4.0451 -2.0037 4.9755 12 1 1.9507 -1.5152 3.8551 13 8 2.0063 -0.6735 -1.1669 14 6 2.3703 0.2023 -2.2358 15 6 1.1885 0.3540 -3.1956 16 6 1.5779 1.2922 -4.3397 17 6 2.7750 0.7086 -5.0929 18 6 3.9567 0.5569 -4.1330 19 6 3.5671 -0.3819 -2.9888 20 1 -0.3632 0.4798 0.9089 21 1 -0.3633 0.5473 -0.8698 22 1 -0.3633 -1.0269 -0.0390 23 1 1.7517 -1.7717 1.2054 24 1 1.6055 -0.2618 2.1369 25 1 6.0261 -1.5124 3.1454 26 1 2.6370 1.1784 -1.8307 27 1 0.9217 -0.6222 -3.6006 28 1 0.3358 0.7701 -2.6591 29 1 1.8444 2.2683 -3.9344 30 1 0.7362 1.4000 -5.0238 31 1 3.0527 1.3772 -5.9077 32 1 2.5085 -0.2676 -5.4982 33 1 4.2233 1.5330 -3.7277 34 1 4.8097 0.1415 -4.6697 35 1 4.4090 -0.4900 -2.3049 36 1 3.3004 -1.3581 -3.3937 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695816197.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:24 Heat of formation + Delta-G solvation = -101.420408 kcal Electronic energy + Delta-G solvation = -14761.498315 eV Core-core repulsion = 12436.494720 eV Total energy + Delta-G solvation = -2325.003596 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.18587 -37.80194 -35.10636 -33.30790 -31.68988 -30.21037 -29.67535 -24.84522 -23.47293 -23.11264 -21.91770 -20.59795 -18.91553 -17.74174 -16.72316 -16.15573 -15.72199 -15.27934 -14.90827 -14.75487 -14.34018 -14.19664 -13.63304 -13.49390 -13.42370 -13.25121 -12.96779 -12.56268 -12.24419 -12.04784 -11.98515 -11.79456 -11.60674 -11.45923 -11.33374 -11.16519 -10.96106 -10.75630 -10.10075 -8.27006 -6.29234 1.35128 1.36952 1.48534 2.36908 2.87407 3.10747 3.81800 3.85421 4.09234 4.13924 4.29261 4.30443 4.39904 4.42051 4.56009 4.57919 4.61404 4.70753 4.86339 4.96274 5.06142 5.08862 5.11934 5.19749 5.22430 5.24523 5.32942 5.36998 5.40812 5.45915 5.53899 5.67609 6.29404 6.64946 6.77224 7.32821 8.90279 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.040407 B = 0.008094 C = 0.006992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.781855 B = 3458.388644 C = 4003.449152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 H 0.043 0.957 4 C -0.017 4.017 5 C -0.515 4.515 6 H 0.026 0.974 7 C 0.000 4.000 8 N -0.954 5.954 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.243 1.243 13 O -0.391 6.391 14 C 0.087 3.913 15 C -0.131 4.131 16 C -0.114 4.114 17 C -0.116 4.116 18 C -0.112 4.112 19 C -0.119 4.119 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.058 0.942 23 H 0.017 0.983 24 H 0.039 0.961 25 H 0.265 0.735 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.033 0.967 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.415 4.213 -12.306 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 H 0.061 0.939 4 C -0.054 4.054 5 C -0.553 4.553 6 H 0.045 0.955 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.166 1.166 13 O -0.311 6.311 14 C 0.029 3.971 15 C -0.169 4.169 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.150 4.150 19 C -0.157 4.157 20 H 0.092 0.908 21 H 0.088 0.912 22 H 0.077 0.923 23 H 0.036 0.964 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.264 3.972 -12.223 16.448 hybrid contribution 0.475 -0.301 0.949 1.103 sum -9.789 3.671 -11.274 15.375 Atomic orbital electron populations 1.22279 0.94226 1.02589 1.02716 1.22117 0.93735 0.94571 0.85402 0.93864 1.19772 0.94630 0.96580 0.94410 1.21317 0.92220 1.33945 1.07864 0.95518 1.26024 0.95653 0.97057 1.00867 1.70079 1.08493 1.47384 1.33607 0.85642 0.79847 0.79192 0.77859 1.19708 1.20783 1.16586 1.87898 1.84734 1.34655 1.23834 1.22262 0.94982 0.92194 0.87677 1.22050 0.97188 1.00825 0.96823 1.21519 0.98799 0.98179 0.96618 1.21557 0.94279 1.01804 0.97653 1.21508 0.99092 0.98838 0.95527 1.21622 0.96595 1.00076 0.97364 0.90769 0.91219 0.92268 0.96434 0.94301 0.92663 0.93950 0.91598 0.91408 0.91971 0.89743 0.89931 0.91567 0.92245 0.90742 0.94773 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 9.56 71.98 0.69 -4.37 16 2 C 0.10 4.14 2.72 30.60 0.08 4.23 16 3 H 0.04 1.84 7.20 -2.39 -0.02 1.82 16 4 C -0.02 -0.82 3.75 29.85 0.11 -0.71 16 5 C -0.52 -31.20 9.43 25.60 0.24 -30.96 16 6 H 0.03 1.79 7.99 -2.91 -0.02 1.77 16 7 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 8 N -0.95 -62.01 13.96 21.45 0.30 -61.71 16 9 Si 0.95 45.86 27.47 68.60 1.88 47.74 16 10 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 12 H -0.24 -10.66 6.54 99.48 0.65 -10.01 16 13 O -0.39 -16.98 9.38 -148.98 -1.40 -18.37 16 14 C 0.09 3.06 2.63 30.59 0.08 3.14 16 15 C -0.13 -3.47 5.57 30.59 0.17 -3.30 16 16 C -0.11 -2.32 5.92 30.60 0.18 -2.13 16 17 C -0.12 -2.30 5.92 30.59 0.18 -2.12 16 18 C -0.11 -2.85 5.92 30.61 0.18 -2.67 16 19 C -0.12 -4.07 5.58 30.61 0.17 -3.90 16 20 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 21 H 0.07 1.86 6.38 -2.39 -0.02 1.85 16 22 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 24 H 0.04 1.82 7.20 -2.39 -0.02 1.80 16 25 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 26 H 0.04 1.57 7.23 -2.39 -0.02 1.55 16 27 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 1.70 6.39 -2.39 -0.02 1.69 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -69.55 281.88 4.30 -65.25 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.96 Total: 9.44 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 2.55 Total: -42.35 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: 0.30 Total: -61.71 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -1.40 Total: -18.37 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.74 kcal Total: -69.55 4.30 -65.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695816197.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.168 kcal (2) G-P(sol) polarization free energy of solvation -69.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds