Wall clock time and date at job start Mon Mar 30 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99677 * 2 1 3 5 5 C 1.50702 * 109.47522 * 185.00185 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 O 1.42904 * 109.47168 * 239.99646 * 2 1 3 14 14 C 1.42897 * 113.99939 * 90.00126 * 13 2 1 15 15 C 1.53001 * 109.47155 * 180.02562 * 14 13 2 16 16 C 1.54269 * 110.02813 * 292.90654 * 15 14 13 17 17 C 1.54968 * 104.15790 * 217.13310 * 16 15 14 18 18 C 1.54893 * 102.77630 * 37.89170 * 17 16 15 19 19 C 1.53872 * 110.03179 * 175.68832 * 15 14 13 20 20 H 1.09003 * 109.46775 * 300.00270 * 1 2 3 21 21 H 1.09001 * 109.46990 * 60.00110 * 1 2 3 22 22 H 1.08994 * 109.47308 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47527 * 64.99784 * 4 2 1 24 24 H 1.09001 * 109.47054 * 304.99874 * 4 2 1 25 25 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 26 26 H 1.09006 * 109.46982 * 299.99912 * 14 13 2 27 27 H 1.09003 * 109.47196 * 59.99757 * 14 13 2 28 28 H 1.08998 * 110.01580 * 54.29297 * 15 14 13 29 29 H 1.08994 * 110.48858 * 335.78424 * 16 15 14 30 30 H 1.09004 * 110.48532 * 98.42892 * 16 15 14 31 31 H 1.08995 * 110.72374 * 279.57561 * 17 16 15 32 32 H 1.08994 * 110.92224 * 156.29538 * 17 16 15 33 33 H 1.08996 * 110.48642 * 203.40846 * 18 17 16 34 34 H 1.08995 * 110.60137 * 80.81183 * 18 17 16 35 35 H 1.08999 * 110.03199 * 238.56570 * 19 15 14 36 36 H 1.08994 * 110.03390 * 359.95324 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5415 -1.1053 2.4104 9 14 3.3015 -2.1085 3.6955 10 1 2.9467 -1.1648 4.7859 11 1 2.0620 -2.6945 3.1251 12 1 4.1574 -3.1935 4.2389 13 8 2.0064 -0.6737 -1.1668 14 6 2.2001 0.1828 -2.2941 15 6 2.7079 -0.6410 -3.4792 16 6 4.1273 -1.1695 -3.1857 17 6 4.8525 -1.0873 -4.5528 18 6 4.3018 0.2298 -5.1540 19 6 2.8186 0.2480 -4.7302 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.7517 -1.7714 1.2058 24 1 1.6054 -0.2616 2.1370 25 1 6.0262 -1.5157 3.1436 26 1 1.2538 0.6545 -2.5589 27 1 2.9320 0.9512 -2.0450 28 1 2.0318 -1.4740 -3.6715 29 1 4.6255 -0.5370 -2.4511 30 1 4.0856 -2.2012 -2.8366 31 1 4.5893 -1.9383 -5.1808 32 1 5.9324 -1.0283 -4.4176 33 1 4.3880 0.2184 -6.2405 34 1 4.8275 1.0898 -4.7394 35 1 2.1968 -0.1540 -5.5301 36 1 2.5097 1.2661 -4.4933 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695819551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:28 Heat of formation + Delta-G solvation = -79.777279 kcal Electronic energy + Delta-G solvation = -14539.955663 eV Core-core repulsion = 12215.890584 eV Total energy + Delta-G solvation = -2324.065079 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.49632 -36.90220 -33.14365 -31.56618 -29.47106 -28.40414 -27.83573 -24.11940 -22.65296 -20.48193 -20.11266 -19.19690 -16.66211 -16.30932 -15.39348 -15.02177 -14.49450 -14.25445 -13.29534 -13.09715 -12.84008 -12.57233 -12.23012 -11.86020 -11.65869 -11.34449 -11.01198 -10.92176 -10.83079 -10.72229 -10.54748 -10.40925 -10.22881 -10.03296 -9.71701 -9.55468 -9.12221 -8.63094 -8.46299 -5.95698 -3.91470 3.34825 3.42654 3.47212 4.34518 4.52051 4.84786 4.86568 5.04692 5.39175 5.51346 5.61127 5.66079 5.74010 5.81469 5.83525 5.84038 5.91974 5.98473 6.03320 6.06509 6.08561 6.27413 6.30310 6.35874 6.49158 6.63247 6.68945 6.77271 6.80609 7.17244 7.32710 7.84554 8.17062 8.63362 9.10342 9.66525 11.18079 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032007 B = 0.008165 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.606680 B = 3428.528936 C = 4091.539286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.050 0.950 4 C -0.013 4.013 5 C -0.504 4.504 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.266 1.266 12 H -0.288 1.288 13 O -0.365 6.365 14 C 0.070 3.930 15 C -0.089 4.089 16 C -0.112 4.112 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.117 4.117 20 H 0.058 0.942 21 H 0.043 0.957 22 H 0.057 0.943 23 H 0.024 0.976 24 H 0.023 0.977 25 H 0.261 0.739 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 2.308 -12.086 13.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.042 3.958 3 H 0.068 0.932 4 C -0.050 4.050 5 C -0.542 4.542 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.190 1.190 12 H -0.214 1.214 13 O -0.284 6.284 14 C -0.007 4.007 15 C -0.108 4.108 16 C -0.149 4.149 17 C -0.165 4.165 18 C -0.161 4.161 19 C -0.155 4.155 20 H 0.077 0.923 21 H 0.062 0.938 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.146 2.057 -11.979 13.620 hybrid contribution -0.469 -0.192 0.818 0.963 sum -6.615 1.864 -11.161 13.107 Atomic orbital electron populations 1.22362 0.98239 1.01852 1.00709 1.22079 0.90695 0.96144 0.86862 0.93158 1.19716 0.97802 0.96338 0.91187 1.21027 0.89580 1.34635 1.09005 0.90978 1.24999 0.94733 0.95978 0.97903 1.69913 1.06430 1.45765 1.32440 0.86829 0.80357 0.80037 0.82366 1.20440 1.19028 1.21425 1.87982 1.86580 1.34411 1.19445 1.22536 0.97878 0.93057 0.87221 1.21719 0.97986 0.97957 0.93093 1.22349 0.94057 1.02174 0.96337 1.22546 0.99794 0.97018 0.97140 1.22349 0.95734 0.98369 0.99693 1.22129 0.96799 0.99739 0.96831 0.92267 0.93788 0.92427 0.95733 0.95893 0.92921 0.94916 0.93730 0.90809 0.90732 0.91318 0.92010 0.91766 0.92192 0.91685 0.91964 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 9.53 37.16 0.35 -2.61 16 2 C 0.10 2.10 2.67 -26.73 -0.07 2.03 16 3 H 0.05 1.05 7.79 -51.93 -0.40 0.65 16 4 C -0.01 -0.33 3.75 -27.88 -0.10 -0.43 16 5 C -0.50 -14.75 9.43 -34.44 -0.32 -15.07 16 6 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.45 13.96 55.43 0.77 -27.68 16 9 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 O -0.37 -7.79 9.58 -35.23 -0.34 -8.13 16 14 C 0.07 1.21 4.79 37.16 0.18 1.39 16 15 C -0.09 -1.35 3.19 -89.50 -0.29 -1.63 16 16 C -0.11 -1.82 6.22 -25.03 -0.16 -1.98 16 17 C -0.13 -1.66 6.91 -24.69 -0.17 -1.83 16 18 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 19 C -0.12 -1.42 6.46 -25.61 -0.17 -1.59 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.04 0.66 7.87 -51.93 -0.41 0.25 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 23 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 24 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.03 0.50 7.87 -51.93 -0.41 0.09 16 27 H 0.04 0.79 7.97 -51.93 -0.41 0.38 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.40 7.77 -51.93 -0.40 1.00 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.72 7.67 -51.93 -0.40 0.33 16 LS Contribution 288.27 15.07 4.34 4.34 Total: -1.00 -31.13 288.27 -7.50 -38.63 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -6.60 Total: -3.15 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -1.01 Total: -21.54 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.77 Total: -27.68 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.34 Total: -8.13 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.13 -7.50 -38.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.151 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds