Wall clock time and date at job start Mon Mar 30 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47118 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99677 * 2 1 3 5 5 C 1.50702 * 109.47522 * 185.00185 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 O 1.42904 * 109.47168 * 239.99646 * 2 1 3 14 14 C 1.42897 * 113.99939 * 90.00126 * 13 2 1 15 15 C 1.53001 * 109.47155 * 180.02562 * 14 13 2 16 16 C 1.54269 * 110.02813 * 292.90654 * 15 14 13 17 17 C 1.54968 * 104.15790 * 217.13310 * 16 15 14 18 18 C 1.54893 * 102.77630 * 37.89170 * 17 16 15 19 19 C 1.53872 * 110.03179 * 175.68832 * 15 14 13 20 20 H 1.09003 * 109.46775 * 300.00270 * 1 2 3 21 21 H 1.09001 * 109.46990 * 60.00110 * 1 2 3 22 22 H 1.08994 * 109.47308 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47527 * 64.99784 * 4 2 1 24 24 H 1.09001 * 109.47054 * 304.99874 * 4 2 1 25 25 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 26 26 H 1.09006 * 109.46982 * 299.99912 * 14 13 2 27 27 H 1.09003 * 109.47196 * 59.99757 * 14 13 2 28 28 H 1.08998 * 110.01580 * 54.29297 * 15 14 13 29 29 H 1.08994 * 110.48858 * 335.78424 * 16 15 14 30 30 H 1.09004 * 110.48532 * 98.42892 * 16 15 14 31 31 H 1.08995 * 110.72374 * 279.57561 * 17 16 15 32 32 H 1.08994 * 110.92224 * 156.29538 * 17 16 15 33 33 H 1.08996 * 110.48642 * 203.40846 * 18 17 16 34 34 H 1.08995 * 110.60137 * 80.81183 * 18 17 16 35 35 H 1.08999 * 110.03199 * 238.56570 * 19 15 14 36 36 H 1.08994 * 110.03390 * 359.95324 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 1 4.0790 -0.0861 0.5392 7 6 4.2304 -1.1934 2.3579 8 7 5.5415 -1.1053 2.4104 9 14 3.3015 -2.1085 3.6955 10 1 2.9467 -1.1648 4.7859 11 1 2.0620 -2.6945 3.1251 12 1 4.1574 -3.1935 4.2389 13 8 2.0064 -0.6737 -1.1668 14 6 2.2001 0.1828 -2.2941 15 6 2.7079 -0.6410 -3.4792 16 6 4.1273 -1.1695 -3.1857 17 6 4.8525 -1.0873 -4.5528 18 6 4.3018 0.2298 -5.1540 19 6 2.8186 0.2480 -4.7302 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.7517 -1.7714 1.2058 24 1 1.6054 -0.2616 2.1370 25 1 6.0262 -1.5157 3.1436 26 1 1.2538 0.6545 -2.5589 27 1 2.9320 0.9512 -2.0450 28 1 2.0318 -1.4740 -3.6715 29 1 4.6255 -0.5370 -2.4511 30 1 4.0856 -2.2012 -2.8366 31 1 4.5893 -1.9383 -5.1808 32 1 5.9324 -1.0283 -4.4176 33 1 4.3880 0.2184 -6.2405 34 1 4.8275 1.0898 -4.7394 35 1 2.1968 -0.1540 -5.5301 36 1 2.5097 1.2661 -4.4933 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695819551.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:28 Heat of formation + Delta-G solvation = -98.484366 kcal Electronic energy + Delta-G solvation = -14540.766863 eV Core-core repulsion = 12215.890584 eV Total energy + Delta-G solvation = -2324.876279 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.84198 -38.31488 -35.19230 -33.40753 -30.78694 -29.73348 -29.48025 -25.52253 -24.53424 -21.89267 -21.52664 -20.43956 -18.90576 -17.78060 -16.77547 -16.56446 -16.02437 -15.80537 -14.89583 -14.60654 -14.27699 -14.07535 -13.88366 -13.57395 -13.41694 -12.68183 -12.52702 -12.46277 -12.05550 -11.97867 -11.89200 -11.81958 -11.60843 -11.50003 -11.43927 -11.23977 -11.18228 -10.75358 -10.21477 -8.26408 -6.28691 1.34368 1.37769 1.49698 2.37446 2.89447 3.11339 3.71476 3.75481 3.89502 4.15474 4.28332 4.40866 4.43776 4.53295 4.56657 4.58000 4.70161 4.77587 4.84474 4.90105 4.91809 5.05052 5.07563 5.11016 5.17693 5.24958 5.25784 5.40589 5.41533 5.48860 5.51478 5.67373 6.29510 6.60245 6.77479 7.33236 8.90927 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.032007 B = 0.008165 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.606680 B = 3428.528936 C = 4091.539286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 H 0.042 0.958 4 C -0.013 4.013 5 C -0.515 4.515 6 H 0.025 0.975 7 C 0.000 4.000 8 N -0.954 5.954 9 Si 0.951 3.049 10 H -0.261 1.261 11 H -0.249 1.249 12 H -0.285 1.285 13 O -0.395 6.395 14 C 0.067 3.933 15 C -0.087 4.087 16 C -0.118 4.118 17 C -0.122 4.122 18 C -0.121 4.121 19 C -0.110 4.110 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.019 0.981 24 H 0.039 0.961 25 H 0.264 0.736 26 H 0.061 0.939 27 H 0.026 0.974 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.702 2.214 -12.869 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.060 0.940 4 C -0.050 4.050 5 C -0.553 4.553 6 H 0.044 0.956 7 C -0.196 4.196 8 N -0.595 5.595 9 Si 0.774 3.226 10 H -0.186 1.186 11 H -0.173 1.173 12 H -0.211 1.211 13 O -0.314 6.314 14 C -0.010 4.010 15 C -0.106 4.106 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.148 4.148 20 H 0.095 0.905 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.037 0.963 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.535 1.979 -12.778 15.493 hybrid contribution 0.368 -0.129 1.012 1.084 sum -8.167 1.850 -11.766 14.442 Atomic orbital electron populations 1.22232 0.94334 1.02608 1.02784 1.22029 0.93617 0.94858 0.85570 0.93979 1.19700 0.94590 0.96670 0.94055 1.21302 0.92223 1.33987 1.07784 0.95634 1.26025 0.95666 0.97042 1.00880 1.70082 1.08511 1.47224 1.33732 0.85646 0.79242 0.78739 0.78937 1.18604 1.17276 1.21096 1.87929 1.87074 1.35947 1.20491 1.22742 0.98812 0.92775 0.86634 1.21777 0.96566 0.98516 0.93736 1.22321 0.95796 0.99959 0.97555 1.22531 0.99431 0.98846 0.95134 1.22361 0.95220 0.96987 1.01264 1.22124 0.97506 0.99524 0.95640 0.90549 0.91408 0.92282 0.96253 0.94287 0.92680 0.92120 0.95536 0.90422 0.94683 0.93516 0.90242 0.91894 0.89368 0.92285 0.89488 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.07 9.53 71.98 0.69 -4.39 16 2 C 0.10 4.04 2.67 30.59 0.08 4.12 16 3 H 0.04 1.78 7.79 -2.39 -0.02 1.76 16 4 C -0.01 -0.64 3.75 29.85 0.11 -0.52 16 5 C -0.51 -31.24 9.43 25.60 0.24 -31.00 16 6 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 7 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 8 N -0.95 -62.08 13.96 21.45 0.30 -61.78 16 9 Si 0.95 45.79 27.47 68.60 1.88 47.67 16 10 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.25 -11.25 6.54 99.48 0.65 -10.60 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 O -0.39 -17.09 9.58 -148.98 -1.43 -18.52 16 14 C 0.07 2.31 4.79 71.98 0.34 2.65 16 15 C -0.09 -2.61 3.19 -10.07 -0.03 -2.64 16 16 C -0.12 -4.07 6.22 31.70 0.20 -3.87 16 17 C -0.12 -3.11 6.91 31.91 0.22 -2.89 16 18 C -0.12 -2.58 6.83 31.67 0.22 -2.37 16 19 C -0.11 -2.41 6.46 31.32 0.20 -2.21 16 20 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 21 H 0.07 1.80 7.87 -2.39 -0.02 1.78 16 22 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 24 H 0.04 1.79 7.57 -2.39 -0.02 1.78 16 25 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 26 H 0.06 1.74 7.87 -2.38 -0.02 1.72 16 27 H 0.03 0.99 7.97 -2.39 -0.02 0.97 16 28 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.03 1.44 7.77 -2.39 -0.02 1.42 16 30 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.45 7.67 -2.39 -0.02 1.43 16 Total: -1.00 -70.06 288.27 4.44 -65.63 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.95 Total: 9.67 kcal Atomic # 6 Polarization: -45.41 SS G_CDS: 2.73 Total: -42.67 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.30 Total: -61.78 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -1.43 Total: -18.52 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.88 Total: 47.67 kcal Total: -70.06 4.44 -65.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819551.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.858 kcal (2) G-P(sol) polarization free energy of solvation -70.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds