Wall clock time and date at job start Mon Mar 30 2020 02:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48501 * 109.46828 * 269.99924 * 3 2 1 5 5 H 1.48497 * 109.47340 * 29.99476 * 3 2 1 6 6 H 1.48498 * 109.47340 * 149.99945 * 3 2 1 7 7 C 1.37884 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99626 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99941 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.46819 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46860 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.47234 * 180.02562 * 11 10 9 13 13 C 1.46902 * 110.99800 * 179.97438 * 12 11 10 14 14 C 1.53006 * 109.46626 * 179.97438 * 13 12 11 15 15 N 1.46902 * 109.46626 * 179.97438 * 14 13 12 16 16 C 1.47476 * 111.00115 * 74.03357 * 15 14 13 17 17 C 1.53510 * 87.93628 * 138.70040 * 16 15 14 18 18 C 1.47479 * 110.99664 * 170.00118 * 15 14 13 19 19 H 0.97003 * 119.99491 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46845 * 60.00270 * 9 7 2 21 21 H 1.09002 * 109.47213 * 300.00485 * 9 7 2 22 22 H 1.09001 * 109.46976 * 60.00318 * 10 9 7 23 23 H 1.08989 * 109.47593 * 299.99865 * 10 9 7 24 24 H 1.08993 * 109.47319 * 60.00035 * 11 10 9 25 25 H 1.09002 * 109.47089 * 300.00090 * 11 10 9 26 26 H 1.00898 * 110.99743 * 56.04920 * 12 11 10 27 27 H 1.09000 * 109.47263 * 60.00269 * 13 12 11 28 28 H 1.09001 * 109.47582 * 299.99548 * 13 12 11 29 29 H 1.08993 * 109.46955 * 300.00347 * 14 13 12 30 30 H 1.09000 * 109.47050 * 60.00176 * 14 13 12 31 31 H 1.08998 * 113.47495 * 253.46917 * 16 15 14 32 32 H 1.08998 * 113.47672 * 23.92839 * 16 15 14 33 33 H 1.09000 * 114.16725 * 220.33198 * 17 16 15 34 34 H 1.09000 * 114.34691 * 87.63298 * 17 16 15 35 35 H 1.09004 * 113.47955 * 336.06580 * 18 15 14 36 36 H 1.08997 * 113.47804 * 106.53006 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 5.5514 -2.6368 0.0022 12 7 6.0411 -4.0218 0.0015 13 6 7.5096 -4.0610 0.0020 14 6 7.9808 -5.5167 0.0019 15 7 9.4493 -5.5559 0.0018 16 6 9.9878 -5.1915 1.3255 17 6 11.0142 -6.3205 1.1571 18 6 9.9414 -6.9254 0.2407 19 1 -0.4849 0.8401 -0.0004 20 1 3.8745 -0.6802 0.8912 21 1 3.8753 -0.6805 -0.8888 22 1 3.6584 -3.1503 -0.8893 23 1 3.6578 -3.1507 0.8906 24 1 5.9141 -2.1233 0.8926 25 1 5.9155 -2.1226 -0.8873 26 1 5.6662 -4.5374 -0.7806 27 1 7.8861 -3.5577 0.8925 28 1 7.8869 -3.5565 -0.8875 29 1 7.6035 -6.0208 0.8915 30 1 7.6042 -6.0204 -0.8884 31 1 10.4356 -4.1981 1.3536 32 1 9.2856 -5.3611 2.1417 33 1 11.2001 -6.8937 2.0654 34 1 11.9272 -6.0244 0.6405 35 1 9.2268 -7.5580 0.7674 36 1 10.3499 -7.4017 -0.6505 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697829921.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:58 Heat of formation + Delta-G solvation = 21.696767 kcal Electronic energy + Delta-G solvation = -13580.464517 eV Core-core repulsion = 11293.092434 eV Total energy + Delta-G solvation = -2287.372083 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.21291 -36.60529 -33.78771 -32.06619 -30.45427 -27.30809 -26.18317 -24.99267 -22.09584 -21.76612 -20.15904 -19.95695 -16.75690 -16.33827 -16.21527 -15.60085 -15.01142 -14.34696 -14.10046 -13.71486 -13.29990 -12.83784 -12.72785 -12.52145 -11.84779 -11.75449 -11.55620 -11.29727 -11.02656 -10.88616 -10.78169 -10.72399 -9.92817 -9.71327 -9.55117 -9.15904 -9.14794 -8.51187 -8.25687 -6.01672 -3.99313 3.32458 3.39658 3.43917 3.65146 4.15651 4.45013 4.47668 4.58971 4.78339 5.05825 5.08674 5.14154 5.32272 5.35653 5.44100 5.47404 5.50074 5.62618 5.68165 5.78734 5.82031 5.92453 6.11684 6.18803 6.55740 6.58913 6.78809 6.93697 7.21150 7.37359 7.45940 7.57105 7.83003 8.57736 9.03911 9.61022 11.11946 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.081182 B = 0.004055 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 344.822419 B = 6904.067737 C = 7124.583105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.058 3.942 12 N -0.692 5.692 13 C 0.064 3.936 14 C 0.021 3.979 15 N -0.476 5.476 16 C -0.004 4.004 17 C -0.148 4.148 18 C -0.003 4.003 19 H 0.262 0.738 20 H 0.016 0.984 21 H 0.009 0.991 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.025 0.975 26 H 0.339 0.661 27 H 0.068 0.932 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.636 -11.379 1.335 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.071 4.071 12 N -0.323 5.323 13 C -0.066 4.066 14 C -0.108 4.108 15 N -0.198 5.198 16 C -0.133 4.133 17 C -0.186 4.186 18 C -0.132 4.132 19 H 0.072 0.928 20 H 0.034 0.966 21 H 0.027 0.973 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.156 0.844 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 20.583 -10.942 1.405 23.353 hybrid contribution 0.079 0.791 -0.274 0.841 sum 20.662 -10.151 1.132 23.049 Atomic orbital electron populations 1.69926 1.06302 1.26828 1.51381 1.25052 0.94746 0.99199 0.94640 0.86757 0.80357 0.83590 0.78448 1.20358 1.21393 1.19033 1.21161 0.89535 0.94469 1.50516 0.91022 1.19546 0.97152 0.92284 0.96126 1.21446 0.91048 0.99685 1.01573 1.22142 0.97617 0.87406 0.99897 1.60496 1.06522 1.15417 1.49884 1.21788 0.88597 0.95322 1.00911 1.22639 0.88567 0.97702 1.01849 1.68906 1.09808 1.13006 1.28113 1.23790 0.97229 1.00339 0.91948 1.23113 0.97722 0.97784 0.99951 1.23762 0.97267 0.92317 0.99818 0.92782 0.96611 0.97263 0.93011 0.91954 0.91540 0.95707 0.84400 0.91359 0.94750 0.93046 0.90716 0.89814 0.91036 0.90711 0.89008 0.91259 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 2 C 0.06 1.92 5.47 -17.81 -0.10 1.82 16 3 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.06 16 7 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C -0.01 -0.32 4.04 -27.89 -0.11 -0.43 16 10 C -0.10 -2.03 5.41 -26.73 -0.14 -2.18 16 11 C 0.06 0.98 5.69 -3.82 -0.02 0.96 16 12 N -0.69 -10.11 6.50 -113.77 -0.74 -10.85 16 13 C 0.06 0.81 5.79 -3.82 -0.02 0.79 16 14 C 0.02 0.23 5.08 -3.82 -0.02 0.21 16 15 N -0.48 -4.93 6.41 -244.70 -1.57 -6.50 16 16 C 0.00 -0.04 7.00 -7.56 -0.05 -0.09 16 17 C -0.15 -1.05 8.47 -26.20 -0.22 -1.27 16 18 C 0.00 -0.02 7.70 -7.56 -0.06 -0.08 16 19 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 20 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 21 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.06 1.31 8.14 -51.94 -0.42 0.89 16 24 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.34 4.62 8.73 -39.29 -0.34 4.28 16 27 H 0.07 0.89 7.67 -51.93 -0.40 0.49 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.57 7.56 -51.93 -0.39 0.18 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.63 7.70 -51.93 -0.40 0.23 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.53 7.77 -51.93 -0.40 0.12 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 291.34 15.07 4.39 4.39 Total: -1.00 -31.09 291.34 -9.42 -40.51 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.52 Total: -1.56 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -1.08 Total: -15.79 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -1.54 Total: -45.04 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.09 -9.42 -40.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697829921.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.206 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds