Wall clock time and date at job start Mon Mar 30 2020 02:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46980 * 2 1 4 4 C 1.53001 * 109.47026 * 240.00261 * 2 1 3 5 5 C 1.50701 * 109.46991 * 174.99841 * 4 2 1 6 6 H 1.08001 * 120.00176 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00157 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00079 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00232 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47164 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46918 * 120.00034 * 9 7 5 12 12 H 1.48504 * 109.47345 * 239.99821 * 9 7 5 13 13 O 1.42899 * 109.47347 * 120.00365 * 2 1 3 14 14 C 1.42905 * 113.99778 * 270.00259 * 13 2 1 15 15 C 1.53002 * 109.47079 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.46969 * 179.97438 * 15 14 13 17 17 C 1.53778 * 113.61513 * 274.13461 * 16 15 14 18 18 C 1.53955 * 87.01980 * 220.05260 * 17 16 15 19 19 C 1.53784 * 87.11372 * 25.36257 * 18 17 16 20 20 H 1.09001 * 109.47258 * 60.00067 * 1 2 3 21 21 H 1.09001 * 109.46539 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46966 * 299.99859 * 1 2 3 23 23 H 1.09001 * 109.47321 * 294.99826 * 4 2 1 24 24 H 1.09000 * 109.47345 * 55.00275 * 4 2 1 25 25 H 0.97000 * 120.00486 * 180.02562 * 8 7 5 26 26 H 1.09004 * 109.47054 * 299.99711 * 14 13 2 27 27 H 1.09000 * 109.47187 * 59.99767 * 14 13 2 28 28 H 1.09004 * 109.46930 * 299.99773 * 15 14 13 29 29 H 1.09004 * 109.47059 * 59.99375 * 15 14 13 30 30 H 1.09001 * 112.85212 * 45.33610 * 16 15 14 31 31 H 1.09000 * 113.61531 * 334.56905 * 17 16 15 32 32 H 1.08993 * 113.61369 * 105.47475 * 17 16 15 33 33 H 1.09011 * 113.53644 * 270.81248 * 18 17 16 34 34 H 1.08998 * 113.66984 * 139.93363 * 18 17 16 35 35 H 1.08994 * 113.61329 * 220.09573 * 19 18 17 36 36 H 1.08996 * 113.68843 * 89.20220 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0854 -0.5397 7 6 4.2304 -1.1924 -2.3584 8 7 3.5763 -1.8359 -3.3007 9 14 6.0920 -1.0600 -2.4375 10 1 6.5837 -0.2908 -1.2663 11 1 6.6862 -2.4209 -2.4202 12 1 6.4861 -0.3637 -3.6885 13 8 2.0064 -0.6737 1.1667 14 6 2.2001 0.1829 2.2941 15 6 2.7092 -0.6407 3.4788 16 6 2.9172 0.2765 4.6856 17 6 4.2947 0.9596 4.7100 18 6 4.3047 0.7049 6.2283 19 6 3.3492 -0.4696 5.9591 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.7517 -1.7715 -1.2057 24 1 1.6054 -0.2616 -2.1370 25 1 4.0607 -2.2426 -4.0361 26 1 2.9320 0.9513 2.0450 27 1 1.2538 0.6546 2.5589 28 1 1.9776 -1.4094 3.7280 29 1 3.6556 -1.1121 3.2137 30 1 2.0860 0.9639 4.8431 31 1 5.0648 0.4089 4.1698 32 1 4.2629 2.0161 4.4438 33 1 3.8538 1.5106 6.8079 34 1 5.2767 0.3974 6.6140 35 1 2.5553 -0.5651 6.6997 36 1 3.8591 -1.4124 5.7611 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710007556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:35 Heat of formation + Delta-G solvation = -57.328431 kcal Electronic energy + Delta-G solvation = -14173.926254 eV Core-core repulsion = 11850.834630 eV Total energy + Delta-G solvation = -2323.091624 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.98291 -37.38348 -33.35129 -31.83447 -30.13721 -27.31478 -25.67456 -24.72150 -23.02788 -21.37969 -20.04640 -19.33360 -16.28019 -16.00307 -15.64280 -14.99929 -14.50918 -14.41871 -13.67580 -13.04372 -12.69759 -12.44542 -12.31659 -11.84554 -11.72965 -11.56841 -11.25762 -11.10244 -10.75312 -10.69142 -10.55421 -10.50771 -10.13670 -10.06635 -9.92672 -9.32772 -9.07432 -8.52007 -8.29895 -5.92589 -3.92438 3.35739 3.42790 3.47623 4.33589 4.52753 4.63060 4.67423 4.81721 4.92807 5.40578 5.44254 5.58185 5.62615 5.71123 5.76841 5.80481 5.84548 5.87182 5.92856 5.95317 6.04563 6.17847 6.23988 6.30994 6.42110 6.47238 6.60717 6.80159 6.99816 7.60275 7.72991 8.05586 8.27535 8.51212 9.11923 9.69581 11.19275 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.026783 B = 0.007216 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.206706 B = 3879.135490 C = 4716.892450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.091 3.909 3 H 0.045 0.955 4 C 0.023 3.977 5 C -0.504 4.504 6 H 0.055 0.945 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 O -0.370 6.370 14 C 0.064 3.936 15 C -0.108 4.108 16 C -0.108 4.108 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.136 4.136 20 H 0.058 0.942 21 H 0.057 0.943 22 H 0.039 0.961 23 H 0.025 0.975 24 H 0.029 0.971 25 H 0.259 0.741 26 H 0.041 0.959 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 5.020 15.404 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.034 3.966 3 H 0.063 0.937 4 C -0.014 4.014 5 C -0.542 4.542 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 O -0.289 6.289 14 C -0.013 4.013 15 C -0.145 4.145 16 C -0.126 4.126 17 C -0.177 4.177 18 C -0.181 4.181 19 C -0.173 4.173 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.058 0.942 23 H 0.043 0.957 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.752 4.728 15.245 16.057 hybrid contribution 0.922 0.324 -0.171 0.992 sum -0.830 5.052 15.074 15.920 Atomic orbital electron populations 1.22328 0.98308 1.01834 1.00416 1.22365 0.90892 0.96054 0.87302 0.93705 1.19254 0.96276 0.96360 0.89531 1.21184 0.91963 1.33690 1.07397 0.92680 1.24998 0.98267 0.95548 0.95833 1.69971 1.35269 1.36508 1.12197 0.86553 0.86080 0.77730 0.77747 1.19816 1.21069 1.21146 1.87988 1.86674 1.34621 1.19607 1.22344 0.97968 0.93414 0.87573 1.21481 1.02318 0.97985 0.92724 1.22480 0.97478 0.97912 0.94764 1.23040 0.97642 1.00891 0.96090 1.22843 0.99773 0.98633 0.96879 1.22925 0.99144 0.97907 0.97366 0.92256 0.92402 0.94185 0.95653 0.95269 0.93172 0.94061 0.94915 0.91461 0.90937 0.89498 0.89784 0.91676 0.90531 0.91693 0.91787 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.53 37.16 0.35 -2.78 16 2 C 0.09 2.01 2.67 -26.73 -0.07 1.94 16 3 H 0.04 0.97 7.79 -51.93 -0.40 0.56 16 4 C 0.02 0.61 4.68 -27.88 -0.13 0.48 16 5 C -0.50 -14.75 8.88 -34.44 -0.31 -15.05 16 6 H 0.05 1.60 7.74 -52.49 -0.41 1.19 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.64 13.29 55.43 0.74 -26.91 16 9 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 O -0.37 -8.14 9.74 -35.23 -0.34 -8.48 16 14 C 0.06 1.11 5.74 37.16 0.21 1.32 16 15 C -0.11 -1.58 5.41 -26.73 -0.14 -1.73 16 16 C -0.11 -1.27 3.64 -89.81 -0.33 -1.60 16 17 C -0.14 -1.59 7.65 -25.83 -0.20 -1.78 16 18 C -0.14 -1.39 8.09 -25.83 -0.21 -1.60 16 19 C -0.14 -1.40 7.65 -25.91 -0.20 -1.59 16 20 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 21 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 22 H 0.04 0.64 7.87 -51.93 -0.41 0.23 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.04 0.72 8.09 -51.93 -0.42 0.30 16 27 H 0.03 0.51 7.87 -51.93 -0.41 0.10 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.15 7.87 -51.93 -0.41 0.74 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.03 7.92 -51.93 -0.41 0.61 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 296.24 15.07 4.46 4.46 Total: -1.00 -31.00 296.24 -7.93 -38.93 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -6.65 Total: -4.38 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -1.11 Total: -20.91 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 0.74 Total: -26.91 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.34 Total: -8.48 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.00 -7.93 -38.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.397 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds