Wall clock time and date at job start Mon Mar 30 2020 02:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46980 * 2 1 4 4 C 1.53001 * 109.47026 * 240.00261 * 2 1 3 5 5 C 1.50701 * 109.46991 * 174.99841 * 4 2 1 6 6 H 1.08001 * 120.00176 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00157 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00079 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00232 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47164 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46918 * 120.00034 * 9 7 5 12 12 H 1.48504 * 109.47345 * 239.99821 * 9 7 5 13 13 O 1.42899 * 109.47347 * 120.00365 * 2 1 3 14 14 C 1.42905 * 113.99778 * 270.00259 * 13 2 1 15 15 C 1.53002 * 109.47079 * 180.02562 * 14 13 2 16 16 C 1.52996 * 109.46969 * 179.97438 * 15 14 13 17 17 C 1.53778 * 113.61513 * 274.13461 * 16 15 14 18 18 C 1.53955 * 87.01980 * 220.05260 * 17 16 15 19 19 C 1.53784 * 87.11372 * 25.36257 * 18 17 16 20 20 H 1.09001 * 109.47258 * 60.00067 * 1 2 3 21 21 H 1.09001 * 109.46539 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46966 * 299.99859 * 1 2 3 23 23 H 1.09001 * 109.47321 * 294.99826 * 4 2 1 24 24 H 1.09000 * 109.47345 * 55.00275 * 4 2 1 25 25 H 0.97000 * 120.00486 * 180.02562 * 8 7 5 26 26 H 1.09004 * 109.47054 * 299.99711 * 14 13 2 27 27 H 1.09000 * 109.47187 * 59.99767 * 14 13 2 28 28 H 1.09004 * 109.46930 * 299.99773 * 15 14 13 29 29 H 1.09004 * 109.47059 * 59.99375 * 15 14 13 30 30 H 1.09001 * 112.85212 * 45.33610 * 16 15 14 31 31 H 1.09000 * 113.61531 * 334.56905 * 17 16 15 32 32 H 1.08993 * 113.61369 * 105.47475 * 17 16 15 33 33 H 1.09011 * 113.53644 * 270.81248 * 18 17 16 34 34 H 1.08998 * 113.66984 * 139.93363 * 18 17 16 35 35 H 1.08994 * 113.61329 * 220.09573 * 19 18 17 36 36 H 1.08996 * 113.68843 * 89.20220 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0854 -0.5397 7 6 4.2304 -1.1924 -2.3584 8 7 3.5763 -1.8359 -3.3007 9 14 6.0920 -1.0600 -2.4375 10 1 6.5837 -0.2908 -1.2663 11 1 6.6862 -2.4209 -2.4202 12 1 6.4861 -0.3637 -3.6885 13 8 2.0064 -0.6737 1.1667 14 6 2.2001 0.1829 2.2941 15 6 2.7092 -0.6407 3.4788 16 6 2.9172 0.2765 4.6856 17 6 4.2947 0.9596 4.7100 18 6 4.3047 0.7049 6.2283 19 6 3.3492 -0.4696 5.9591 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.7517 -1.7715 -1.2057 24 1 1.6054 -0.2616 -2.1370 25 1 4.0607 -2.2426 -4.0361 26 1 2.9320 0.9513 2.0450 27 1 1.2538 0.6546 2.5589 28 1 1.9776 -1.4094 3.7280 29 1 3.6556 -1.1121 3.2137 30 1 2.0860 0.9639 4.8431 31 1 5.0648 0.4089 4.1698 32 1 4.2629 2.0161 4.4438 33 1 3.8538 1.5106 6.8079 34 1 5.2767 0.3974 6.6140 35 1 2.5553 -0.5651 6.6997 36 1 3.8591 -1.4124 5.7611 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710007556.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:35 Heat of formation + Delta-G solvation = -74.712154 kcal Electronic energy + Delta-G solvation = -14174.680068 eV Core-core repulsion = 11850.834630 eV Total energy + Delta-G solvation = -2323.845439 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.97830 -38.94054 -35.37285 -33.57035 -31.59643 -29.29621 -26.54903 -25.89654 -25.00410 -22.56270 -21.81391 -20.24922 -18.51558 -17.58435 -16.68786 -16.65835 -16.18659 -15.44267 -15.26439 -14.54611 -14.26028 -13.77198 -13.48986 -13.36183 -13.29975 -13.21241 -12.83210 -12.64648 -12.49351 -12.35177 -11.95293 -11.84390 -11.43650 -11.26507 -11.22142 -10.98940 -10.96012 -10.57812 -10.19640 -8.19077 -6.27723 1.37401 1.38553 1.51588 2.41017 2.91591 3.15879 3.71457 3.79008 3.92390 4.00939 4.17146 4.24520 4.41225 4.48390 4.52708 4.56636 4.68821 4.77845 4.89020 4.90619 4.92510 5.03627 5.10572 5.15911 5.20169 5.24687 5.25988 5.43007 5.44675 5.53892 5.66708 5.80246 6.24112 6.64511 6.85211 7.39220 8.93323 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.026783 B = 0.007216 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.206706 B = 3879.135490 C = 4716.892450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 H 0.048 0.952 4 C 0.024 3.976 5 C -0.525 4.525 6 H 0.052 0.948 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.274 1.274 13 O -0.399 6.399 14 C 0.060 3.940 15 C -0.102 4.102 16 C -0.107 4.107 17 C -0.148 4.148 18 C -0.134 4.134 19 C -0.134 4.134 20 H 0.069 0.931 21 H 0.051 0.949 22 H 0.069 0.931 23 H -0.008 1.008 24 H 0.013 0.987 25 H 0.263 0.737 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 6.046 17.068 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.067 0.933 4 C -0.013 4.013 5 C -0.563 4.563 6 H 0.070 0.930 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.199 1.199 13 O -0.319 6.319 14 C -0.017 4.017 15 C -0.140 4.140 16 C -0.125 4.125 17 C -0.185 4.185 18 C -0.171 4.171 19 C -0.171 4.171 20 H 0.088 0.912 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.011 0.989 24 H 0.031 0.969 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.404 5.763 16.922 17.932 hybrid contribution 0.794 -0.006 -0.689 1.051 sum -0.610 5.757 16.234 17.235 Atomic orbital electron populations 1.22212 0.95186 1.02099 1.02416 1.22136 0.93283 0.95032 0.85682 0.93345 1.19146 0.95513 0.94803 0.91791 1.21514 0.93343 1.33901 1.07510 0.92972 1.25926 1.03664 0.94976 0.95332 1.70092 1.37455 1.37184 1.12836 0.85440 0.79562 0.78018 0.78289 1.18966 1.20466 1.19937 1.87934 1.87065 1.36306 1.20601 1.22598 0.99113 0.93282 0.86684 1.21472 1.01126 0.98365 0.93040 1.22521 0.98118 0.97896 0.93998 1.23074 0.97035 1.00804 0.97628 1.22825 1.00114 0.98658 0.95514 1.22922 0.99654 0.97811 0.96709 0.91233 0.93024 0.91162 0.98946 0.96869 0.92798 0.94633 0.92553 0.91352 0.92889 0.88144 0.91281 0.91356 0.88970 0.91058 0.90292 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.71 9.53 71.98 0.69 -5.03 16 2 C 0.10 4.24 2.67 30.60 0.08 4.32 16 3 H 0.05 2.07 7.79 -2.38 -0.02 2.05 16 4 C 0.02 1.36 4.68 29.85 0.14 1.50 16 5 C -0.52 -31.30 8.88 25.60 0.23 -31.07 16 6 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.93 -58.45 13.29 21.45 0.28 -58.17 16 9 Si 0.96 45.99 29.54 68.60 2.03 48.01 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 O -0.40 -17.59 9.74 -148.98 -1.45 -19.05 16 14 C 0.06 2.00 5.74 71.98 0.41 2.41 16 15 C -0.10 -2.94 5.41 30.59 0.17 -2.77 16 16 C -0.11 -2.32 3.64 -10.27 -0.04 -2.35 16 17 C -0.15 -3.16 7.65 31.18 0.24 -2.92 16 18 C -0.13 -2.25 8.09 31.18 0.25 -2.00 16 19 C -0.13 -2.44 7.65 31.12 0.24 -2.20 16 20 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 21 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.07 2.05 7.87 -2.39 -0.02 2.03 16 23 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 24 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 26 H 0.04 1.22 8.09 -2.38 -0.02 1.20 16 27 H 0.06 1.62 7.87 -2.39 -0.02 1.60 16 28 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.05 1.70 7.87 -2.39 -0.02 1.68 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.66 7.92 -2.39 -0.02 1.65 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 Total: -1.00 -66.93 296.24 4.73 -62.21 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.00 Total: 6.76 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 2.87 Total: -39.76 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.28 Total: -58.17 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -1.45 Total: -19.05 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -66.93 4.73 -62.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710007556.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.506 kcal (2) G-P(sol) polarization free energy of solvation -66.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds