Wall clock time and date at job start Mon Mar 30 2020 02:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46965 * 2 1 4 4 C 1.52998 * 109.47129 * 120.00446 * 2 1 3 5 5 C 1.50695 * 109.47171 * 184.99645 * 4 2 1 6 6 H 1.08007 * 120.00132 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00107 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99864 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00060 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46903 * 60.00824 * 9 7 5 11 11 H 1.48501 * 109.47008 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47294 * 300.00849 * 9 7 5 13 13 O 1.42904 * 109.46887 * 240.00678 * 2 1 3 14 14 C 1.42895 * 113.99939 * 90.00001 * 13 2 1 15 15 C 1.53005 * 109.47085 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.47511 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47365 * 179.97438 * 16 15 14 18 18 C 1.53002 * 117.49888 * 116.25530 * 17 16 15 19 19 C 1.53000 * 117.50107 * 184.91292 * 17 16 15 20 20 H 1.09000 * 109.47285 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47378 * 299.99791 * 1 2 3 22 22 H 1.09005 * 109.46982 * 59.99273 * 1 2 3 23 23 H 1.09000 * 109.46906 * 305.00354 * 4 2 1 24 24 H 1.08999 * 109.46880 * 64.99692 * 4 2 1 25 25 H 0.97001 * 120.00025 * 179.97438 * 8 7 5 26 26 H 1.08997 * 109.47410 * 60.00291 * 14 13 2 27 27 H 1.08991 * 109.47809 * 299.99575 * 14 13 2 28 28 H 1.09002 * 109.47130 * 59.99819 * 15 14 13 29 29 H 1.09004 * 109.47245 * 300.00236 * 15 14 13 30 30 H 1.09002 * 109.47067 * 59.99785 * 16 15 14 31 31 H 1.09004 * 109.47062 * 300.00352 * 16 15 14 32 32 H 1.09002 * 115.54951 * 330.58504 * 17 16 15 33 33 H 1.09000 * 117.49996 * 215.00804 * 18 17 16 34 34 H 1.08999 * 117.49664 * 0.02562 * 18 17 16 35 35 H 1.09008 * 117.49673 * 359.97438 * 19 17 16 36 36 H 1.08999 * 117.49959 * 144.99502 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3126 6 1 4.0790 -0.0856 0.5395 7 6 4.2303 -1.1929 2.3582 8 7 3.5763 -1.8372 3.2998 9 14 6.0919 -1.0606 2.4372 10 1 6.4843 0.3704 2.4967 11 1 6.5869 -1.7608 3.6496 12 1 6.6845 -1.6865 1.2279 13 8 2.0063 -0.6735 -1.1669 14 6 2.2000 0.1831 -2.2941 15 6 2.7090 -0.6403 -3.4790 16 6 2.9158 0.2768 -4.6861 17 6 3.4254 -0.5465 -5.8707 18 6 2.5288 -0.6348 -7.1073 19 6 3.8049 0.2097 -7.1454 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 1.6053 -0.2619 2.1369 24 1 1.7516 -1.7716 1.2054 25 1 4.0607 -2.2440 4.0352 26 1 2.9319 0.9515 -2.0450 27 1 1.2539 0.6549 -2.5588 28 1 1.9774 -1.4089 -3.7282 29 1 3.6554 -1.1118 -3.2140 30 1 3.6472 1.0457 -4.4371 31 1 1.9692 0.7479 -4.9509 32 1 4.0153 -1.4261 -5.6128 33 1 2.5288 -1.5725 -7.6630 34 1 1.5762 -0.1060 -7.0771 35 1 3.6911 1.2938 -7.1403 36 1 4.6444 -0.1723 -7.7262 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000711562054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:37 Heat of formation + Delta-G solvation = -54.571793 kcal Electronic energy + Delta-G solvation = -13893.165912 eV Core-core repulsion = 11570.193825 eV Total energy + Delta-G solvation = -2322.972087 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.05776 -37.32823 -33.69982 -32.49871 -30.78551 -27.31814 -26.13981 -23.08344 -22.52044 -21.39645 -20.55673 -19.90319 -16.27732 -16.08636 -15.72214 -15.11912 -14.67237 -14.35461 -13.67631 -13.39874 -12.63679 -12.27073 -12.01994 -11.78267 -11.66076 -11.56590 -11.41430 -11.22097 -10.91365 -10.64365 -10.62742 -10.52293 -10.21484 -9.99213 -9.90072 -9.34062 -9.10066 -8.53136 -8.29129 -5.92190 -3.92270 3.38634 3.42387 3.45640 3.68323 4.28568 4.52985 4.73776 4.82506 4.89872 5.17750 5.33301 5.44141 5.48473 5.54105 5.69197 5.76288 5.80688 5.87298 5.91636 5.97137 5.99616 6.05371 6.17430 6.19241 6.36953 6.45194 6.54350 6.79656 6.99271 7.59891 7.72528 8.05600 8.26585 8.51092 9.11529 9.69658 11.19602 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029156 B = 0.006105 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.125555 B = 4585.107835 C = 5363.614604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.091 3.909 3 H 0.045 0.955 4 C 0.024 3.976 5 C -0.506 4.506 6 H 0.054 0.946 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 O -0.369 6.369 14 C 0.062 3.938 15 C -0.115 4.115 16 C -0.086 4.086 17 C -0.148 4.148 18 C -0.183 4.183 19 C -0.185 4.185 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.039 0.961 23 H 0.029 0.971 24 H 0.025 0.975 25 H 0.260 0.740 26 H 0.041 0.959 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.577 4.416 -16.208 16.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.034 3.966 3 H 0.063 0.937 4 C -0.013 4.013 5 C -0.545 4.545 6 H 0.072 0.928 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.720 3.280 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 O -0.288 6.288 14 C -0.015 4.015 15 C -0.152 4.152 16 C -0.124 4.124 17 C -0.166 4.166 18 C -0.220 4.220 19 C -0.222 4.222 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.058 0.942 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.517 4.119 -16.039 16.750 hybrid contribution 0.958 0.298 0.085 1.007 sum -1.558 4.417 -15.954 16.628 Atomic orbital electron populations 1.22330 0.98283 1.01849 1.00425 1.22377 0.90914 0.96069 0.87281 0.93676 1.19239 0.96233 0.96353 0.89503 1.21107 0.91961 1.33927 1.07466 0.92793 1.24989 0.98260 0.95501 0.95806 1.69949 1.35485 1.36314 1.12196 0.86666 0.85994 0.78083 0.77293 1.20377 1.21359 1.20277 1.87992 1.86679 1.34555 1.19572 1.22360 0.98089 0.93392 0.87668 1.21463 1.02471 0.98461 0.92812 1.21098 1.00675 0.97472 0.93107 1.22360 1.03222 1.01703 0.89335 1.23037 0.94965 1.01891 1.02072 1.22969 0.98926 0.98710 1.01564 0.92390 0.92237 0.94188 0.95271 0.95658 0.93050 0.94066 0.94834 0.91415 0.90933 0.91488 0.91966 0.87625 0.89062 0.88900 0.88936 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.53 37.16 0.35 -2.77 16 2 C 0.09 2.00 2.67 -26.73 -0.07 1.93 16 3 H 0.05 0.97 7.79 -51.93 -0.40 0.56 16 4 C 0.02 0.63 4.68 -27.89 -0.13 0.50 16 5 C -0.51 -14.80 8.88 -34.44 -0.31 -15.10 16 6 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 7 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 9 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 13 O -0.37 -8.09 9.74 -35.23 -0.34 -8.43 16 14 C 0.06 1.06 5.75 37.16 0.21 1.28 16 15 C -0.11 -1.67 5.54 -26.73 -0.15 -1.82 16 16 C -0.09 -1.00 5.49 -26.73 -0.15 -1.15 16 17 C -0.15 -1.58 5.73 -90.62 -0.52 -2.10 16 18 C -0.18 -1.71 10.18 -26.69 -0.27 -1.98 16 19 C -0.18 -1.70 10.25 -26.70 -0.27 -1.97 16 20 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 21 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.04 0.63 7.87 -51.93 -0.41 0.22 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.03 0.51 7.87 -51.93 -0.41 0.11 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 32 H 0.11 1.15 8.08 -51.93 -0.42 0.73 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.83 8.03 -51.93 -0.42 0.41 16 35 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 301.12 15.07 4.54 4.54 Total: -1.00 -31.00 301.12 -8.14 -39.14 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -6.66 Total: -3.96 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -1.40 Total: -21.67 kcal Atomic # 7 Polarization: -27.62 SS G_CDS: 0.74 Total: -26.88 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.34 Total: -8.43 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.00 -8.14 -39.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711562054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.428 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds