Wall clock time and date at job start Mon Mar 30 2020 02:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46965 * 2 1 4 4 C 1.52998 * 109.47129 * 120.00446 * 2 1 3 5 5 C 1.50695 * 109.47171 * 184.99645 * 4 2 1 6 6 H 1.08007 * 120.00132 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00107 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99864 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00060 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46903 * 60.00824 * 9 7 5 11 11 H 1.48501 * 109.47008 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47294 * 300.00849 * 9 7 5 13 13 O 1.42904 * 109.46887 * 240.00678 * 2 1 3 14 14 C 1.42895 * 113.99939 * 90.00001 * 13 2 1 15 15 C 1.53005 * 109.47085 * 179.97438 * 14 13 2 16 16 C 1.52997 * 109.47511 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47365 * 179.97438 * 16 15 14 18 18 C 1.53002 * 117.49888 * 116.25530 * 17 16 15 19 19 C 1.53000 * 117.50107 * 184.91292 * 17 16 15 20 20 H 1.09000 * 109.47285 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47378 * 299.99791 * 1 2 3 22 22 H 1.09005 * 109.46982 * 59.99273 * 1 2 3 23 23 H 1.09000 * 109.46906 * 305.00354 * 4 2 1 24 24 H 1.08999 * 109.46880 * 64.99692 * 4 2 1 25 25 H 0.97001 * 120.00025 * 179.97438 * 8 7 5 26 26 H 1.08997 * 109.47410 * 60.00291 * 14 13 2 27 27 H 1.08991 * 109.47809 * 299.99575 * 14 13 2 28 28 H 1.09002 * 109.47130 * 59.99819 * 15 14 13 29 29 H 1.09004 * 109.47245 * 300.00236 * 15 14 13 30 30 H 1.09002 * 109.47067 * 59.99785 * 16 15 14 31 31 H 1.09004 * 109.47062 * 300.00352 * 16 15 14 32 32 H 1.09002 * 115.54951 * 330.58504 * 17 16 15 33 33 H 1.09000 * 117.49996 * 215.00804 * 18 17 16 34 34 H 1.08999 * 117.49664 * 0.02562 * 18 17 16 35 35 H 1.09008 * 117.49673 * 359.97438 * 19 17 16 36 36 H 1.08999 * 117.49959 * 144.99502 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6151 1.3126 6 1 4.0790 -0.0856 0.5395 7 6 4.2303 -1.1929 2.3582 8 7 3.5763 -1.8372 3.2998 9 14 6.0919 -1.0606 2.4372 10 1 6.4843 0.3704 2.4967 11 1 6.5869 -1.7608 3.6496 12 1 6.6845 -1.6865 1.2279 13 8 2.0063 -0.6735 -1.1669 14 6 2.2000 0.1831 -2.2941 15 6 2.7090 -0.6403 -3.4790 16 6 2.9158 0.2768 -4.6861 17 6 3.4254 -0.5465 -5.8707 18 6 2.5288 -0.6348 -7.1073 19 6 3.8049 0.2097 -7.1454 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 1.6053 -0.2619 2.1369 24 1 1.7516 -1.7716 1.2054 25 1 4.0607 -2.2440 4.0352 26 1 2.9319 0.9515 -2.0450 27 1 1.2539 0.6549 -2.5588 28 1 1.9774 -1.4089 -3.7282 29 1 3.6554 -1.1118 -3.2140 30 1 3.6472 1.0457 -4.4371 31 1 1.9692 0.7479 -4.9509 32 1 4.0153 -1.4261 -5.6128 33 1 2.5288 -1.5725 -7.6630 34 1 1.5762 -0.1060 -7.0771 35 1 3.6911 1.2938 -7.1403 36 1 4.6444 -0.1723 -7.7262 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711562054.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:37 Heat of formation + Delta-G solvation = -71.664498 kcal Electronic energy + Delta-G solvation = -13893.907108 eV Core-core repulsion = 11570.193825 eV Total energy + Delta-G solvation = -2323.713283 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.38385 -38.44656 -35.48332 -34.16123 -32.44362 -29.28903 -27.31571 -25.12650 -23.23811 -22.60881 -21.88530 -21.22621 -18.50143 -17.60476 -16.85595 -16.63513 -16.16905 -15.58459 -15.10765 -14.75065 -14.23035 -13.87486 -13.57832 -13.39200 -13.14253 -12.88661 -12.64442 -12.54462 -12.45487 -12.35648 -12.13138 -11.88742 -11.69197 -11.26770 -11.20181 -11.02894 -10.72395 -10.56144 -10.19513 -8.17975 -6.26864 1.38483 1.42292 1.49984 2.42057 2.84582 2.99975 3.16957 3.82587 4.01113 4.06059 4.16380 4.16914 4.29616 4.41484 4.45758 4.57043 4.59538 4.73158 4.81067 4.82507 4.91231 4.93068 5.08731 5.18051 5.22907 5.25682 5.28243 5.32913 5.43900 5.45767 5.54899 5.80811 6.24785 6.64843 6.85750 7.40043 8.94047 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.029156 B = 0.006105 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.125555 B = 4585.107835 C = 5363.614604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 H 0.050 0.950 4 C 0.025 3.975 5 C -0.527 4.527 6 H 0.053 0.947 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.265 1.265 11 H -0.281 1.281 12 H -0.272 1.272 13 O -0.399 6.399 14 C 0.056 3.944 15 C -0.108 4.108 16 C -0.077 4.077 17 C -0.167 4.167 18 C -0.179 4.179 19 C -0.177 4.177 20 H 0.050 0.950 21 H 0.069 0.931 22 H 0.070 0.930 23 H 0.013 0.987 24 H -0.008 1.008 25 H 0.263 0.737 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.188 5.490 -17.805 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.068 0.932 4 C -0.012 4.012 5 C -0.565 4.565 6 H 0.071 0.929 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.197 1.197 13 O -0.319 6.319 14 C -0.020 4.020 15 C -0.146 4.146 16 C -0.114 4.114 17 C -0.186 4.186 18 C -0.216 4.216 19 C -0.214 4.214 20 H 0.069 0.931 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.031 0.969 24 H 0.010 0.990 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.135 5.206 -17.653 18.528 hybrid contribution 0.818 -0.052 0.560 0.993 sum -1.317 5.154 -17.092 17.901 Atomic orbital electron populations 1.22215 0.95208 1.02080 1.02430 1.22145 0.93275 0.95096 0.85642 0.93194 1.19133 0.95494 0.94775 0.91789 1.21469 0.93354 1.34111 1.07610 0.92886 1.25923 1.03672 0.94925 0.95301 1.70079 1.37628 1.37035 1.12825 0.85545 0.79466 0.78769 0.77535 1.18947 1.20578 1.19726 1.87936 1.87077 1.36282 1.20585 1.22631 0.99376 0.93293 0.86719 1.21435 1.01278 0.98758 0.93131 1.21009 1.01442 0.96895 0.92048 1.22308 1.04567 1.01985 0.89700 1.23128 0.95259 1.02371 1.00811 1.23055 0.99166 0.99116 1.00050 0.93069 0.91230 0.91137 0.96895 0.99007 0.92795 0.94307 0.92426 0.91512 0.92793 0.91388 0.90673 0.88460 0.88381 0.88253 0.88195 0.88204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.68 9.53 71.98 0.69 -5.00 16 2 C 0.10 4.20 2.67 30.59 0.08 4.28 16 3 H 0.05 2.11 7.79 -2.38 -0.02 2.09 16 4 C 0.03 1.39 4.68 29.85 0.14 1.53 16 5 C -0.53 -31.35 8.88 25.60 0.23 -31.12 16 6 H 0.05 3.08 7.74 -2.91 -0.02 3.06 16 7 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 8 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16 9 Si 0.96 45.80 29.54 68.60 2.03 47.83 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 13 O -0.40 -17.46 9.74 -148.98 -1.45 -18.91 16 14 C 0.06 1.85 5.75 71.98 0.41 2.27 16 15 C -0.11 -3.07 5.54 30.60 0.17 -2.90 16 16 C -0.08 -1.65 5.49 30.59 0.17 -1.48 16 17 C -0.17 -3.31 5.73 -10.79 -0.06 -3.37 16 18 C -0.18 -2.94 10.18 30.62 0.31 -2.63 16 19 C -0.18 -2.85 10.25 30.62 0.31 -2.53 16 20 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 22 H 0.07 2.04 7.87 -2.38 -0.02 2.02 16 23 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 24 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 25 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.04 1.28 8.08 -2.39 -0.02 1.27 16 27 H 0.06 1.62 7.87 -2.39 -0.02 1.60 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.43 7.88 -2.38 -0.02 1.41 16 32 H 0.10 2.06 8.08 -2.39 -0.02 2.04 16 33 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.10 1.51 8.03 -2.39 -0.02 1.49 16 35 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -66.77 301.12 4.77 -61.99 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 1.00 Total: 7.77 kcal Atomic # 6 Polarization: -43.47 SS G_CDS: 2.91 Total: -40.56 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.28 Total: -58.13 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -1.45 Total: -18.91 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -66.77 4.77 -61.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711562054.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.670 kcal (2) G-P(sol) polarization free energy of solvation -66.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds