Wall clock time and date at job start Mon Mar 30 2020 02:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47027 * 2 1 4 4 C 1.52993 * 109.47401 * 239.99758 * 2 1 3 5 5 C 1.53001 * 109.47511 * 300.00264 * 4 2 1 6 6 C 1.52999 * 109.46880 * 299.99961 * 5 4 2 7 7 C 1.53003 * 109.47350 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47064 * 299.99943 * 6 5 4 9 9 C 1.53004 * 109.47374 * 59.99777 * 6 5 4 10 10 C 1.52999 * 109.46920 * 119.99840 * 2 1 3 11 11 O 1.42905 * 109.47222 * 180.02562 * 10 2 1 12 12 C 1.50704 * 109.47066 * 299.99856 * 10 2 1 13 13 H 1.08000 * 120.00148 * 0.02562 * 12 10 2 14 14 C 1.37878 * 119.99519 * 179.97438 * 12 10 2 15 15 N 1.31507 * 120.00505 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99464 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47337 * 90.00315 * 16 14 12 18 18 H 1.48504 * 109.46873 * 210.00164 * 16 14 12 19 19 H 1.48501 * 109.47159 * 329.99820 * 16 14 12 20 20 H 1.09003 * 109.47027 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47332 * 300.00142 * 1 2 3 22 22 H 1.09002 * 109.47010 * 60.00069 * 1 2 3 23 23 H 1.09002 * 109.47640 * 180.02562 * 4 2 1 24 24 H 1.09006 * 109.47347 * 59.99905 * 4 2 1 25 25 H 1.09002 * 109.46789 * 59.99331 * 5 4 2 26 26 H 1.09000 * 109.47465 * 179.97438 * 5 4 2 27 27 H 1.09000 * 109.47027 * 59.99906 * 7 6 5 28 28 H 1.08993 * 109.47119 * 179.97438 * 7 6 5 29 29 H 1.09002 * 109.47071 * 300.00085 * 7 6 5 30 30 H 1.09001 * 109.47326 * 48.83744 * 8 6 5 31 31 H 1.09000 * 109.46904 * 168.84097 * 8 6 5 32 32 H 1.08995 * 109.46750 * 288.83366 * 8 6 5 33 33 H 1.08993 * 109.47356 * 180.02562 * 9 6 5 34 34 H 1.08992 * 109.46966 * 59.99958 * 9 6 5 35 35 H 0.96698 * 114.00404 * 179.97438 * 11 10 2 36 36 H 0.97005 * 120.00372 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 1.5295 -4.3274 0.0004 8 6 3.5700 -2.8849 0.0001 9 6 1.5299 -2.1638 1.2493 10 6 2.0399 -0.7212 1.2493 11 8 3.4690 -0.7207 1.2496 12 6 1.5376 -0.0107 2.4797 13 1 0.9163 0.8672 2.3806 14 6 1.8702 -0.4821 3.7320 15 7 2.6262 -1.5514 3.8527 16 14 1.2469 0.3981 5.2571 17 1 -0.0613 -0.1769 5.6608 18 1 2.2247 0.2271 6.3617 19 1 1.0821 1.8441 4.9615 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 3.1300 -0.7217 -1.2489 24 1 1.6767 -0.2075 -2.1392 25 1 0.4400 -2.1637 -1.2492 26 1 1.8931 -2.6775 -2.1394 27 1 1.8926 -4.8414 -0.8896 28 1 1.8932 -4.8412 0.8901 29 1 0.4395 -4.3270 0.0006 30 1 3.9334 -1.8767 -0.1988 31 1 3.9333 -3.2168 0.9728 32 1 3.9334 -3.5614 -0.7735 33 1 1.8936 -2.6773 2.1393 34 1 0.4400 -2.1638 1.2493 35 1 3.8623 -1.1620 2.0149 36 1 2.8606 -1.8828 4.7337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713111027.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:20 Heat of formation + Delta-G solvation = -74.778627 kcal Electronic energy + Delta-G solvation = -15981.628179 eV Core-core repulsion = 13657.779858 eV Total energy + Delta-G solvation = -2323.848321 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.25256 -34.56330 -33.09140 -32.04372 -29.11590 -26.81516 -26.26245 -25.07233 -24.10360 -21.20538 -19.07534 -16.89331 -16.66854 -15.10067 -14.66972 -14.17852 -14.01489 -13.40875 -13.11469 -12.87106 -12.10585 -11.74530 -11.60505 -11.39382 -11.21825 -11.06013 -10.97645 -10.81327 -10.53177 -10.36734 -10.16554 -10.00476 -9.81090 -9.65286 -9.39660 -9.17783 -8.62882 -8.43538 -7.62433 -6.06660 -4.17065 3.26058 3.33655 3.37378 4.37596 5.14964 5.53619 5.60188 5.69691 5.92552 5.99076 6.12259 6.22405 6.32124 6.38298 6.44825 6.46785 6.57544 6.63242 6.66928 6.74669 6.77447 6.91789 7.01142 7.05624 7.10508 7.19618 7.29014 7.42863 7.58663 7.72129 7.85304 8.15503 8.33564 8.84895 9.50633 9.68084 10.94566 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.035568 B = 0.012998 C = 0.011504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.040222 B = 2153.625945 C = 2433.430886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 H 0.055 0.945 4 C -0.112 4.112 5 C -0.103 4.103 6 C -0.064 4.064 7 C -0.137 4.137 8 C -0.141 4.141 9 C -0.123 4.123 10 C 0.260 3.740 11 O -0.587 6.587 12 C -0.529 4.529 13 H 0.058 0.942 14 C 0.068 3.932 15 N -0.898 5.898 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.275 1.275 20 H 0.053 0.947 21 H 0.059 0.941 22 H 0.032 0.968 23 H 0.067 0.933 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.019 0.981 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.378 0.622 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.541 -2.168 -6.122 6.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.149 4.149 5 C -0.141 4.141 6 C -0.064 4.064 7 C -0.194 4.194 8 C -0.198 4.198 9 C -0.161 4.161 10 C 0.221 3.779 11 O -0.396 6.396 12 C -0.567 4.567 13 H 0.076 0.924 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.721 3.279 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.200 1.200 20 H 0.072 0.928 21 H 0.078 0.922 22 H 0.051 0.949 23 H 0.086 0.914 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.038 0.962 33 H 0.110 0.890 34 H 0.059 0.941 35 H 0.228 0.772 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.557 -1.956 -6.542 7.004 hybrid contribution -0.388 0.034 1.497 1.547 sum -1.945 -1.922 -5.045 5.738 Atomic orbital electron populations 1.21819 0.96102 1.01305 1.00104 1.20934 0.94561 0.98747 0.94756 0.92610 1.21572 1.01176 0.95156 0.96990 1.21567 0.99689 0.95862 0.96957 1.20554 0.96011 0.93492 0.96329 1.21874 0.99995 0.97216 1.00337 1.22178 0.94920 1.03099 0.99597 1.22259 0.98685 0.98882 0.96317 1.18484 0.78795 0.90184 0.90438 1.86083 1.21895 1.82360 1.49266 1.21838 1.31308 1.12354 0.91216 0.92351 1.24976 0.94653 0.94587 0.99022 1.69602 1.37551 1.22917 1.23865 0.86580 0.78523 0.80161 0.82604 1.20756 1.21231 1.19966 0.92764 0.92164 0.94890 0.91429 0.94225 0.92837 0.93939 0.94168 0.93177 0.93755 0.88917 0.93395 0.96238 0.89047 0.94081 0.77180 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.25 37.16 0.31 -2.33 16 2 C -0.07 -1.52 2.42 -90.63 -0.22 -1.74 16 3 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.11 -2.10 5.12 -26.73 -0.14 -2.24 16 5 C -0.10 -1.86 4.46 -26.73 -0.12 -1.97 16 6 C -0.06 -1.24 0.77 -154.50 -0.12 -1.36 16 7 C -0.14 -2.37 8.45 37.16 0.31 -2.05 16 8 C -0.14 -2.76 7.10 37.16 0.26 -2.50 16 9 C -0.12 -2.81 3.34 -26.73 -0.09 -2.90 16 10 C 0.26 6.23 0.44 -91.77 -0.04 6.19 16 11 O -0.59 -14.56 8.83 -35.23 -0.31 -14.87 16 12 C -0.53 -13.99 7.52 -34.44 -0.26 -14.25 16 13 H 0.06 1.56 6.71 -52.49 -0.35 1.20 16 14 C 0.07 1.80 5.22 -17.82 -0.09 1.71 16 15 N -0.90 -23.79 9.68 55.43 0.54 -23.25 16 16 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H 0.05 1.04 4.81 -51.93 -0.25 0.79 16 21 H 0.06 1.23 6.62 -51.93 -0.34 0.88 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.07 1.33 5.94 -51.93 -0.31 1.02 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.94 6.43 -51.93 -0.33 0.60 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.93 3.79 -51.93 -0.20 1.73 16 31 H 0.05 0.98 7.91 -51.93 -0.41 0.57 16 32 H 0.02 0.33 8.10 -51.93 -0.42 -0.09 16 33 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 34 H 0.04 0.95 6.43 -51.93 -0.33 0.61 16 35 H 0.38 9.78 6.88 45.56 0.31 10.10 16 36 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 257.44 15.07 3.88 3.88 Total: -1.00 -25.90 257.44 -6.15 -32.05 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -5.05 Total: 9.84 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -0.19 Total: -23.45 kcal Atomic # 7 Polarization: -23.79 SS G_CDS: 0.54 Total: -23.25 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.31 Total: -14.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.90 -6.15 -32.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713111027.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.726 kcal (2) G-P(sol) polarization free energy of solvation -25.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds