Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47027 * 2 1 4 4 C 1.52993 * 109.47401 * 239.99758 * 2 1 3 5 5 C 1.53001 * 109.47511 * 300.00264 * 4 2 1 6 6 C 1.52999 * 109.46880 * 299.99961 * 5 4 2 7 7 C 1.53003 * 109.47350 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.47064 * 299.99943 * 6 5 4 9 9 C 1.53004 * 109.47374 * 59.99777 * 6 5 4 10 10 C 1.52999 * 109.46920 * 119.99840 * 2 1 3 11 11 O 1.42905 * 109.47222 * 180.02562 * 10 2 1 12 12 C 1.50704 * 109.47066 * 299.99856 * 10 2 1 13 13 H 1.08000 * 120.00148 * 0.02562 * 12 10 2 14 14 C 1.37878 * 119.99519 * 179.97438 * 12 10 2 15 15 N 1.31507 * 120.00505 * 0.02562 * 14 12 10 16 16 Si 1.86801 * 119.99464 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47337 * 90.00315 * 16 14 12 18 18 H 1.48504 * 109.46873 * 210.00164 * 16 14 12 19 19 H 1.48501 * 109.47159 * 329.99820 * 16 14 12 20 20 H 1.09003 * 109.47027 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47332 * 300.00142 * 1 2 3 22 22 H 1.09002 * 109.47010 * 60.00069 * 1 2 3 23 23 H 1.09002 * 109.47640 * 180.02562 * 4 2 1 24 24 H 1.09006 * 109.47347 * 59.99905 * 4 2 1 25 25 H 1.09002 * 109.46789 * 59.99331 * 5 4 2 26 26 H 1.09000 * 109.47465 * 179.97438 * 5 4 2 27 27 H 1.09000 * 109.47027 * 59.99906 * 7 6 5 28 28 H 1.08993 * 109.47119 * 179.97438 * 7 6 5 29 29 H 1.09002 * 109.47071 * 300.00085 * 7 6 5 30 30 H 1.09001 * 109.47326 * 48.83744 * 8 6 5 31 31 H 1.09000 * 109.46904 * 168.84097 * 8 6 5 32 32 H 1.08995 * 109.46750 * 288.83366 * 8 6 5 33 33 H 1.08993 * 109.47356 * 180.02562 * 9 6 5 34 34 H 1.08992 * 109.46966 * 59.99958 * 9 6 5 35 35 H 0.96698 * 114.00404 * 179.97438 * 11 10 2 36 36 H 0.97005 * 120.00372 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 1.5295 -4.3274 0.0004 8 6 3.5700 -2.8849 0.0001 9 6 1.5299 -2.1638 1.2493 10 6 2.0399 -0.7212 1.2493 11 8 3.4690 -0.7207 1.2496 12 6 1.5376 -0.0107 2.4797 13 1 0.9163 0.8672 2.3806 14 6 1.8702 -0.4821 3.7320 15 7 2.6262 -1.5514 3.8527 16 14 1.2469 0.3981 5.2571 17 1 -0.0613 -0.1769 5.6608 18 1 2.2247 0.2271 6.3617 19 1 1.0821 1.8441 4.9615 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 3.1300 -0.7217 -1.2489 24 1 1.6767 -0.2075 -2.1392 25 1 0.4400 -2.1637 -1.2492 26 1 1.8931 -2.6775 -2.1394 27 1 1.8926 -4.8414 -0.8896 28 1 1.8932 -4.8412 0.8901 29 1 0.4395 -4.3270 0.0006 30 1 3.9334 -1.8767 -0.1988 31 1 3.9333 -3.2168 0.9728 32 1 3.9334 -3.5614 -0.7735 33 1 1.8936 -2.6773 2.1393 34 1 0.4400 -2.1638 1.2493 35 1 3.8623 -1.1620 2.0149 36 1 2.8606 -1.8828 4.7337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713111027.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = -89.382686 kcal Electronic energy + Delta-G solvation = -15982.261459 eV Core-core repulsion = 13657.779858 eV Total energy + Delta-G solvation = -2324.481601 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.92637 -36.35206 -34.72481 -34.05836 -30.81281 -28.43272 -27.79522 -26.98615 -25.67916 -22.92117 -20.73914 -18.69046 -18.49005 -17.00880 -16.41599 -15.87705 -15.72852 -15.07486 -14.72692 -14.49660 -13.84009 -13.36294 -13.30475 -12.90789 -12.87172 -12.81322 -12.55854 -12.48224 -12.29362 -12.14788 -11.85521 -11.81970 -11.49654 -11.27870 -11.07550 -10.78611 -10.45744 -10.32227 -9.50987 -8.06714 -6.24430 1.38330 1.41488 1.49635 2.41991 3.11861 4.00510 4.04129 4.18828 4.30317 4.46468 4.58442 4.69073 4.82220 4.83586 4.97766 4.99633 5.05742 5.11156 5.16076 5.21392 5.23179 5.29622 5.36627 5.42957 5.50759 5.60908 5.63110 5.68769 5.80240 5.98396 6.03600 6.27206 6.38413 6.81501 7.45799 7.65014 8.90924 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.035568 B = 0.012998 C = 0.011504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.040222 B = 2153.625945 C = 2433.430886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.075 4.075 3 H 0.037 0.963 4 C -0.107 4.107 5 C -0.099 4.099 6 C -0.066 4.066 7 C -0.133 4.133 8 C -0.134 4.134 9 C -0.112 4.112 10 C 0.250 3.750 11 O -0.589 6.589 12 C -0.552 4.552 13 H 0.047 0.953 14 C 0.028 3.972 15 N -0.910 5.910 16 Si 0.947 3.053 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.276 1.276 20 H 0.056 0.944 21 H 0.040 0.960 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.025 0.975 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.368 0.632 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 -2.630 -7.574 8.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.094 4.094 3 H 0.056 0.944 4 C -0.144 4.144 5 C -0.136 4.136 6 C -0.066 4.066 7 C -0.190 4.190 8 C -0.191 4.191 9 C -0.151 4.151 10 C 0.211 3.789 11 O -0.397 6.397 12 C -0.590 4.590 13 H 0.066 0.934 14 C -0.171 4.171 15 N -0.551 5.551 16 Si 0.773 3.227 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.202 1.202 20 H 0.075 0.925 21 H 0.060 0.940 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.050 0.950 35 H 0.218 0.782 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.249 -2.416 -8.002 8.657 hybrid contribution -0.153 0.206 1.964 1.981 sum -2.402 -2.211 -6.038 6.864 Atomic orbital electron populations 1.21741 0.94570 1.01611 1.00671 1.20952 0.95858 0.97673 0.94892 0.94422 1.21527 1.00485 0.95905 0.96520 1.21546 1.00193 0.95017 0.96872 1.20555 0.95802 0.94766 0.95466 1.21816 1.00459 0.95635 1.01079 1.22053 0.95154 1.02700 0.99177 1.22038 0.97836 0.98213 0.96983 1.18688 0.78137 0.91114 0.90986 1.86104 1.22683 1.82323 1.48592 1.22145 1.31595 1.12437 0.92818 0.93427 1.25582 0.94982 0.95264 1.01251 1.69712 1.37823 1.23433 1.24180 0.85746 0.78099 0.78999 0.79817 1.20364 1.20929 1.20153 0.92500 0.94039 0.91884 0.92579 0.91544 0.91977 0.91309 0.91659 0.94221 0.93027 0.90355 0.95542 0.93728 0.92229 0.94952 0.78241 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.25 71.98 0.59 -4.20 16 2 C -0.08 -3.14 2.42 -10.80 -0.03 -3.16 16 3 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 4 C -0.11 -3.77 5.12 30.59 0.16 -3.61 16 5 C -0.10 -3.22 4.46 30.59 0.14 -3.08 16 6 C -0.07 -2.44 0.77 -52.18 -0.04 -2.48 16 7 C -0.13 -4.26 8.45 71.98 0.61 -3.65 16 8 C -0.13 -5.08 7.10 71.98 0.51 -4.57 16 9 C -0.11 -5.13 3.34 30.60 0.10 -5.02 16 10 C 0.25 12.06 0.44 -11.54 -0.01 12.06 16 11 O -0.59 -29.79 8.83 -148.98 -1.32 -31.11 16 12 C -0.55 -29.72 7.52 25.60 0.19 -29.53 16 13 H 0.05 2.60 6.71 -2.91 -0.02 2.58 16 14 C 0.03 1.51 5.22 84.66 0.44 1.96 16 15 N -0.91 -49.16 9.68 21.45 0.21 -48.96 16 16 Si 0.95 43.17 29.54 68.60 2.03 45.20 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H 0.06 2.07 4.81 -2.39 -0.01 2.05 16 21 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16 22 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.06 2.11 5.94 -2.39 -0.01 2.09 16 24 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 25 H 0.06 1.94 6.43 -2.39 -0.02 1.92 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 3.21 3.79 -2.39 -0.01 3.20 16 31 H 0.03 1.08 7.91 -2.39 -0.02 1.06 16 32 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16 33 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 34 H 0.03 1.48 6.43 -2.39 -0.02 1.47 16 35 H 0.37 19.73 6.88 -74.06 -0.51 19.22 16 36 H 0.26 13.73 8.31 -92.70 -0.77 12.95 16 Total: -1.00 -55.19 257.44 4.14 -51.05 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: 0.55 Total: 29.12 kcal Atomic # 6 Polarization: -47.98 SS G_CDS: 2.67 Total: -45.31 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.21 Total: -48.96 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -1.32 Total: -31.11 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -55.19 4.14 -51.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713111027.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.332 kcal (2) G-P(sol) polarization free energy of solvation -55.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds