Wall clock time and date at job start Mon Mar 30 2020 02:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47017 * 2 1 4 4 C 1.53001 * 109.47242 * 119.99531 * 2 1 3 5 5 C 1.53010 * 109.46869 * 60.00491 * 4 2 1 6 6 C 1.52994 * 109.47062 * 59.99891 * 5 4 2 7 7 C 1.52997 * 109.47404 * 60.00274 * 6 5 4 8 8 C 1.53007 * 109.46939 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47368 * 299.99804 * 6 5 4 10 10 C 1.52994 * 109.47404 * 240.00078 * 2 1 3 11 11 O 1.42907 * 109.47543 * 180.02562 * 10 2 1 12 12 C 1.50695 * 109.47383 * 59.99647 * 10 2 1 13 13 H 1.08000 * 119.99724 * 0.02562 * 12 10 2 14 14 C 1.37877 * 120.00218 * 180.02562 * 12 10 2 15 15 N 1.31513 * 120.00151 * 359.97438 * 14 12 10 16 16 Si 1.86804 * 120.00221 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46792 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47054 * 119.99547 * 16 14 12 19 19 H 1.48497 * 109.47189 * 239.99973 * 16 14 12 20 20 H 1.08998 * 109.47192 * 299.99975 * 1 2 3 21 21 H 1.09000 * 109.46875 * 60.00378 * 1 2 3 22 22 H 1.08998 * 109.46934 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47430 * 300.00348 * 4 2 1 24 24 H 1.08996 * 109.47271 * 179.97438 * 4 2 1 25 25 H 1.08996 * 109.46508 * 299.99652 * 5 4 2 26 26 H 1.09000 * 109.47128 * 180.02562 * 5 4 2 27 27 H 1.08996 * 109.46759 * 71.16140 * 7 6 5 28 28 H 1.09001 * 109.46964 * 311.15815 * 7 6 5 29 29 H 1.08999 * 109.46846 * 191.16065 * 7 6 5 30 30 H 1.09000 * 109.46763 * 299.99540 * 8 6 5 31 31 H 1.08996 * 109.47004 * 59.99532 * 8 6 5 32 32 H 1.08998 * 109.47089 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.47430 * 180.02562 * 9 6 5 34 34 H 1.08996 * 109.47271 * 300.00893 * 9 6 5 35 35 H 0.96693 * 113.99879 * 180.02562 * 11 10 2 36 36 H 0.97001 * 120.00223 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5301 -2.1638 1.2493 6 6 2.0401 -2.8850 0.0001 7 6 3.5701 -2.8850 0.0001 8 6 1.5296 -4.3274 -0.0002 9 6 1.5301 -2.1638 -1.2492 10 6 2.0400 -0.7212 -1.2492 11 8 3.4691 -0.7217 -1.2489 12 6 1.5377 -0.0109 -2.4796 13 1 0.9171 0.8674 -2.3806 14 6 1.8704 -0.4823 -3.7319 15 7 2.6266 -1.5515 -3.8526 16 14 1.2483 0.3987 -5.2572 17 1 0.4237 1.5656 -4.8531 18 1 2.4036 0.8646 -6.0655 19 1 0.4227 -0.5342 -6.0654 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6767 -0.2073 2.1393 24 1 3.1300 -0.7215 1.2491 25 1 0.4401 -2.1637 1.2493 26 1 1.8930 -2.6774 2.1395 27 1 3.9333 -3.5613 0.7738 28 1 3.9334 -1.8767 0.1990 29 1 3.9334 -3.2168 -0.9725 30 1 1.8927 -4.8414 0.8898 31 1 0.4397 -4.3270 -0.0003 32 1 1.8926 -4.8410 -0.8903 33 1 1.8931 -2.6779 -2.1391 34 1 0.4401 -2.1638 -1.2491 35 1 3.8623 -1.1631 -2.0141 36 1 2.8610 -1.8829 -4.7336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713111028.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:22 Heat of formation + Delta-G solvation = -74.788503 kcal Electronic energy + Delta-G solvation = -15981.889974 eV Core-core repulsion = 13658.041225 eV Total energy + Delta-G solvation = -2323.848750 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.25349 -34.56361 -33.09192 -32.04524 -29.11616 -26.81475 -26.26275 -25.07435 -24.10394 -21.20696 -19.07577 -16.89415 -16.67102 -15.10381 -14.66996 -14.17919 -14.01137 -13.40959 -13.11397 -12.87511 -12.10699 -11.74506 -11.60909 -11.39338 -11.21627 -11.07117 -10.97789 -10.82368 -10.50507 -10.36496 -10.15969 -10.00741 -9.81345 -9.65294 -9.39480 -9.17879 -8.63152 -8.43772 -7.62271 -6.06942 -4.17262 3.25046 3.34026 3.38015 4.37483 5.14778 5.53626 5.60171 5.69666 5.92589 5.99058 6.12277 6.22428 6.32150 6.38300 6.44839 6.46785 6.57526 6.63261 6.66945 6.74669 6.77466 6.91847 7.01169 7.05597 7.10504 7.19620 7.29063 7.42893 7.58708 7.72152 7.85263 8.15378 8.33454 8.85070 9.50534 9.67969 10.94333 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.035571 B = 0.012998 C = 0.011503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.979112 B = 2153.687273 C = 2433.579368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 H 0.055 0.945 4 C -0.112 4.112 5 C -0.103 4.103 6 C -0.064 4.064 7 C -0.141 4.141 8 C -0.137 4.137 9 C -0.123 4.123 10 C 0.260 3.740 11 O -0.587 6.587 12 C -0.528 4.528 13 H 0.059 0.941 14 C 0.068 3.932 15 N -0.898 5.898 16 Si 0.893 3.107 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.285 1.285 20 H 0.032 0.968 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.019 0.981 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.378 0.622 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.549 -2.157 6.134 6.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.149 4.149 5 C -0.141 4.141 6 C -0.064 4.064 7 C -0.198 4.198 8 C -0.194 4.194 9 C -0.161 4.161 10 C 0.221 3.779 11 O -0.396 6.396 12 C -0.566 4.566 13 H 0.077 0.923 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.721 3.279 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.211 1.211 20 H 0.051 0.949 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.228 0.772 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.572 -1.944 6.556 7.016 hybrid contribution -0.371 0.030 -1.502 1.548 sum -1.943 -1.914 5.054 5.743 Atomic orbital electron populations 1.21818 0.96098 1.01306 1.00111 1.20935 0.94564 0.98743 0.94752 0.92613 1.21573 1.01176 0.95156 0.96990 1.21567 0.99689 0.95861 0.96957 1.20551 0.96013 0.93489 0.96327 1.22177 0.94921 1.03102 0.99595 1.21875 0.99997 0.97219 1.00333 1.22260 0.98687 0.98881 0.96314 1.18489 0.78792 0.90194 0.90455 1.86082 1.21899 1.82372 1.49254 1.21874 1.31260 1.12303 0.91201 0.92290 1.24980 0.94672 0.94579 0.99036 1.69614 1.37628 1.22928 1.23759 0.86526 0.78633 0.79739 0.82986 1.19856 1.21015 1.21092 0.94891 0.92155 0.92764 0.94223 0.91430 0.92836 0.93941 0.96241 0.88911 0.93396 0.94162 0.93760 0.93176 0.89055 0.94084 0.77178 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.25 37.16 0.31 -2.33 16 2 C -0.07 -1.52 2.42 -90.62 -0.22 -1.74 16 3 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 4 C -0.11 -2.10 5.12 -26.73 -0.14 -2.24 16 5 C -0.10 -1.86 4.46 -26.73 -0.12 -1.97 16 6 C -0.06 -1.24 0.77 -154.51 -0.12 -1.36 16 7 C -0.14 -2.76 7.10 37.16 0.26 -2.50 16 8 C -0.14 -2.37 8.45 37.16 0.31 -2.06 16 9 C -0.12 -2.81 3.34 -26.73 -0.09 -2.90 16 10 C 0.26 6.22 0.45 -91.77 -0.04 6.18 16 11 O -0.59 -14.56 8.83 -35.23 -0.31 -14.87 16 12 C -0.53 -13.97 7.52 -34.44 -0.26 -14.23 16 13 H 0.06 1.58 6.71 -52.49 -0.35 1.22 16 14 C 0.07 1.79 5.22 -17.82 -0.09 1.70 16 15 N -0.90 -23.78 9.68 55.43 0.54 -23.25 16 16 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 1.23 6.62 -51.93 -0.34 0.89 16 22 H 0.05 1.04 4.81 -51.93 -0.25 0.79 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 1.33 5.94 -51.93 -0.31 1.02 16 25 H 0.05 0.94 6.43 -51.93 -0.33 0.60 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.02 0.33 8.10 -51.93 -0.42 -0.09 16 28 H 0.09 1.93 3.79 -51.93 -0.20 1.73 16 29 H 0.05 0.98 7.90 -51.93 -0.41 0.57 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 34 H 0.04 0.94 6.43 -51.93 -0.33 0.61 16 35 H 0.38 9.78 6.88 45.56 0.31 10.10 16 36 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 257.43 15.07 3.88 3.88 Total: -1.00 -25.91 257.43 -6.15 -32.07 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.05 Total: 9.81 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -0.19 Total: -23.44 kcal Atomic # 7 Polarization: -23.78 SS G_CDS: 0.54 Total: -23.25 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.31 Total: -14.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.91 -6.15 -32.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713111028.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.721 kcal (2) G-P(sol) polarization free energy of solvation -25.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds