Wall clock time and date at job start Mon Mar 30 2020 03:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47211 * 2 1 4 4 N 1.46897 * 109.52375 * 305.00133 * 3 2 1 5 5 C 1.53121 * 109.52110 * 65.12844 * 3 2 1 6 6 C 1.53168 * 109.20753 * 177.56061 * 5 3 2 7 7 N 1.46841 * 109.55673 * 300.86322 * 6 5 3 8 8 C 1.46904 * 111.00098 * 185.84171 * 7 6 5 9 9 C 1.50705 * 109.46643 * 300.34106 * 8 7 6 10 10 H 1.07997 * 120.00404 * 4.83433 * 9 8 7 11 11 C 1.37880 * 119.99453 * 184.83370 * 9 8 7 12 12 N 1.31507 * 120.00654 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99513 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47203 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47473 * 119.99909 * 13 11 9 16 16 H 1.48504 * 109.47165 * 239.99612 * 13 11 9 17 17 C 1.46845 * 111.20332 * 61.74016 * 7 6 5 18 18 C 1.53040 * 109.52004 * 298.26175 * 17 7 6 19 19 H 1.09004 * 109.46967 * 299.99988 * 1 2 3 20 20 H 1.08999 * 109.47208 * 59.99579 * 1 2 3 21 21 H 1.08994 * 109.47428 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47045 * 240.00508 * 2 1 3 23 23 H 1.08999 * 109.47208 * 120.00421 * 2 1 3 24 24 H 1.00901 * 110.99849 * 60.00224 * 4 3 2 25 25 H 1.00903 * 110.99919 * 183.95210 * 4 3 2 26 26 H 1.09006 * 109.50061 * 297.56289 * 5 3 2 27 27 H 1.08998 * 109.50748 * 57.68122 * 5 3 2 28 28 H 1.08996 * 109.44987 * 180.83028 * 6 5 3 29 29 H 1.09005 * 109.43869 * 60.88466 * 6 5 3 30 30 H 1.08997 * 109.47416 * 60.33513 * 8 7 6 31 31 H 1.09001 * 109.47088 * 180.34344 * 8 7 6 32 32 H 0.96999 * 120.00457 * 179.97438 * 12 11 9 33 33 H 1.08995 * 109.46470 * 178.24208 * 17 7 6 34 34 H 1.08998 * 109.45874 * 58.27437 * 17 7 6 35 35 H 1.08997 * 109.50081 * 299.22919 * 18 17 7 36 36 H 1.09005 * 109.50101 * 179.11905 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4549 2.1701 -1.1341 5 6 1.6383 2.1272 1.3093 6 6 2.2043 3.5504 1.3280 7 7 3.6670 3.4993 1.2087 8 6 4.2547 4.8369 1.3620 9 6 3.7077 5.7510 0.2960 10 1 2.9375 5.3989 -0.3742 11 6 4.1906 7.0369 0.1764 12 7 5.1281 7.4659 0.9928 13 14 3.5120 8.1703 -1.1444 14 1 2.4729 7.4530 -1.9261 15 1 2.9125 9.3701 -0.5071 16 1 4.6117 8.5885 -2.0505 17 6 4.0751 2.8876 -0.0624 18 6 3.5662 1.4456 -0.1226 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 0.4478 2.1835 -1.0742 25 1 1.8262 3.1065 -1.1932 26 1 0.5513 2.1652 1.3815 27 1 2.0401 1.5651 2.1523 28 1 1.9331 4.0366 2.2651 29 1 1.7913 4.1160 0.4927 30 1 4.0029 5.2340 2.3453 31 1 5.3383 4.7711 1.2632 32 1 5.4681 8.3705 0.9084 33 1 5.1626 2.8924 -0.1350 34 1 3.6534 3.4565 -0.8910 35 1 3.9985 0.8726 0.6978 36 1 3.8559 0.9968 -1.0728 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714754255.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:52 Heat of formation + Delta-G solvation = -33.438514 kcal Electronic energy + Delta-G solvation = -15125.611705 eV Core-core repulsion = 12835.848776 eV Total energy + Delta-G solvation = -2289.762928 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.70466 -37.08682 -34.59788 -32.09995 -31.65029 -30.83968 -28.20633 -25.92435 -24.17244 -23.43784 -21.61872 -19.68611 -18.42444 -17.28298 -16.83524 -15.96017 -15.87207 -15.77238 -14.99166 -14.84060 -14.39955 -13.94512 -13.72062 -13.40357 -13.15452 -12.95268 -12.78453 -12.51778 -12.38285 -12.13058 -12.06053 -11.81077 -11.70727 -11.67087 -11.24882 -10.90172 -10.63429 -9.52807 -8.98236 -8.16561 -6.37537 1.34623 1.36109 1.47516 2.35245 3.07499 3.36353 3.66028 3.87758 3.93240 4.08532 4.37797 4.46434 4.52678 4.65113 4.68535 4.72919 4.78867 4.96737 5.04159 5.11851 5.18510 5.22963 5.25085 5.28900 5.31632 5.36838 5.42578 5.59472 5.72025 6.03118 6.25324 6.32366 6.56608 6.62166 6.84221 7.34453 8.85410 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.045591 B = 0.008331 C = 0.007803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.011390 B = 3359.993637 C = 3587.348307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 C 0.122 3.878 4 N -0.841 5.841 5 C -0.134 4.134 6 C 0.063 3.937 7 N -0.540 5.540 8 C 0.198 3.802 9 C -0.554 4.554 10 H 0.059 0.941 11 C 0.010 3.990 12 N -0.928 5.928 13 Si 0.959 3.041 14 H -0.265 1.265 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.065 3.935 18 C -0.096 4.096 19 H 0.054 0.946 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.343 0.657 25 H 0.333 0.667 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.021 0.979 30 H 0.000 1.000 31 H 0.004 0.996 32 H 0.265 0.735 33 H 0.049 0.951 34 H 0.024 0.976 35 H 0.072 0.928 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.673 -12.757 -2.473 15.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.140 4.140 3 C 0.029 3.971 4 N -0.373 5.373 5 C -0.174 4.174 6 C -0.065 4.065 7 N -0.264 5.264 8 C 0.071 3.929 9 C -0.593 4.593 10 H 0.077 0.923 11 C -0.190 4.190 12 N -0.568 5.568 13 Si 0.784 3.216 14 H -0.189 1.189 15 H -0.204 1.204 16 H -0.205 1.205 17 C -0.064 4.064 18 C -0.134 4.134 19 H 0.073 0.927 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.157 0.843 25 H 0.147 0.853 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.018 0.982 31 H 0.022 0.978 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.054 -13.483 -2.507 15.904 hybrid contribution -0.459 2.434 -0.273 2.491 sum -8.513 -11.049 -2.780 14.222 Atomic orbital electron populations 1.21795 0.95099 1.02223 1.01804 1.21475 0.96668 0.93656 1.02195 1.20820 0.93840 0.94559 0.87894 1.59106 1.11288 1.22031 1.44924 1.22408 1.00300 0.94897 0.99747 1.21912 0.88299 0.96829 0.99483 1.62362 1.08957 1.21875 1.33233 1.19418 0.93877 0.84823 0.94783 1.21999 1.21769 0.98419 1.17068 0.92252 1.25850 0.95087 0.99836 0.98184 1.70074 1.29235 1.18278 1.39185 0.85493 0.78440 0.78662 0.79005 1.18889 1.20433 1.20470 1.21870 0.98996 0.95124 0.90409 1.21620 0.94667 0.94962 1.02121 0.92690 0.92369 0.91724 0.91566 0.91172 0.84270 0.85299 0.90391 0.91097 0.93189 0.96056 0.98186 0.97767 0.92617 0.93229 0.95804 0.90893 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.21 71.98 0.66 -2.04 16 2 C -0.10 -2.15 5.16 30.59 0.16 -1.99 16 3 C 0.12 3.25 0.71 3.61 0.00 3.25 16 4 N -0.84 -23.20 8.66 -151.26 -1.31 -24.51 16 5 C -0.13 -3.84 4.76 30.69 0.15 -3.70 16 6 C 0.06 2.43 4.80 86.37 0.41 2.84 16 7 N -0.54 -23.54 4.86 -900.67 -4.38 -27.92 16 8 C 0.20 10.65 5.12 85.56 0.44 11.09 16 9 C -0.55 -30.77 7.73 25.60 0.20 -30.57 16 10 H 0.06 3.21 5.85 -2.91 -0.02 3.19 16 11 C 0.01 0.55 5.46 84.66 0.46 1.01 16 12 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 13 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 14 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 C 0.06 2.54 4.88 86.33 0.42 2.97 16 18 C -0.10 -2.90 5.08 30.64 0.16 -2.75 16 19 H 0.05 0.96 6.63 -2.38 -0.02 0.95 16 20 H 0.06 1.05 6.61 -2.39 -0.02 1.03 16 21 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.34 8.16 7.04 -89.69 -0.63 7.53 16 25 H 0.33 10.93 5.60 -89.69 -0.50 10.42 16 26 H 0.08 1.93 6.70 -2.38 -0.02 1.91 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 2.01 8.12 -2.39 -0.02 1.99 16 29 H 0.02 0.87 5.26 -2.38 -0.01 0.86 16 30 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.00 0.24 8.09 -2.39 -0.02 0.22 16 32 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 33 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 34 H 0.02 1.02 5.53 -2.39 -0.01 1.00 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -60.82 269.39 -0.38 -61.20 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.07 Total: 20.59 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 3.06 Total: -19.89 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -5.40 Total: -107.99 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -60.82 -0.38 -61.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714754255.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.766 kcal (2) G-P(sol) polarization free energy of solvation -60.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds