Wall clock time and date at job start Mon Mar 30 2020 03:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48528 * 111.00388 * 2 1 4 4 C 1.54944 * 103.22720 * 200.27733 * 3 2 1 5 5 C 1.54594 * 102.91854 * 37.41064 * 4 3 2 6 6 C 1.53002 * 110.39177 * 219.08375 * 5 4 3 7 7 N 1.46905 * 110.30981 * 96.96088 * 5 4 3 8 8 C 1.46902 * 110.99800 * 182.82620 * 7 5 4 9 9 C 1.53006 * 109.46626 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.46866 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99962 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00270 * 180.02562 * 10 9 8 13 13 N 1.31522 * 119.99834 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00496 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47574 * 89.99780 * 14 12 10 16 16 H 1.48500 * 109.47346 * 209.99892 * 14 12 10 17 17 H 1.48499 * 109.47067 * 329.99541 * 14 12 10 18 18 C 1.47903 * 110.99870 * 242.59562 * 2 1 3 19 19 H 1.08990 * 109.47549 * 177.39713 * 1 2 3 20 20 H 1.09001 * 109.47247 * 297.40289 * 1 2 3 21 21 H 1.09004 * 109.46550 * 57.39854 * 1 2 3 22 22 H 1.09004 * 110.66325 * 318.70760 * 3 2 1 23 23 H 1.08999 * 110.67126 * 81.67448 * 3 2 1 24 24 H 1.08998 * 110.72488 * 279.05363 * 4 3 2 25 25 H 1.08995 * 110.72432 * 155.76506 * 4 3 2 26 26 H 1.08998 * 109.47157 * 298.56068 * 6 5 4 27 27 H 1.09005 * 109.47022 * 58.55737 * 6 5 4 28 28 H 1.09004 * 109.47604 * 178.55832 * 6 5 4 29 29 H 1.00891 * 110.99988 * 306.78035 * 7 5 4 30 30 H 1.09000 * 109.47263 * 60.00269 * 8 7 5 31 31 H 1.09001 * 109.47582 * 299.99548 * 8 7 5 32 32 H 1.08993 * 109.46955 * 300.00347 * 9 8 7 33 33 H 1.09000 * 109.47050 * 60.00176 * 9 8 7 34 34 H 0.96992 * 120.00032 * 180.02562 * 13 12 10 35 35 H 1.08991 * 109.91962 * 26.49667 * 18 2 1 36 36 H 1.09000 * 109.91701 * 265.19780 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3866 0.0000 4 6 3.4493 1.2104 -0.5227 5 6 3.2983 0.1051 -1.5929 6 6 4.4892 -0.8540 -1.5404 7 7 3.1843 0.7023 -2.9303 8 6 2.9729 -0.3316 -3.9522 9 6 2.8587 0.3275 -5.3283 10 6 2.6412 -0.7330 -6.3766 11 1 2.5900 -1.7731 -6.0901 12 6 2.5085 -0.3757 -7.7017 13 7 2.5713 0.8908 -8.0506 14 14 2.2383 -1.6901 -9.0010 15 1 0.7818 -1.9219 -9.1754 16 1 2.8256 -1.2413 -10.2890 17 1 2.8925 -2.9523 -8.5719 18 6 1.9990 -0.6355 -1.2258 19 1 -0.3634 -1.0265 -0.0467 20 1 -0.3634 0.4730 0.9123 21 1 -0.3632 0.5537 -0.8658 22 1 1.4238 2.0204 -0.6730 23 1 2.0014 1.7987 1.0091 24 1 4.1116 0.8834 0.2788 25 1 3.8124 2.1349 -0.9717 26 1 5.4069 -0.3059 -1.7537 27 1 4.5541 -1.2987 -0.5473 28 1 4.3551 -1.6409 -2.2828 29 1 2.4488 1.3924 -2.9565 30 1 2.0546 -0.8764 -3.7333 31 1 3.8153 -1.0233 -3.9491 32 1 2.0161 1.0189 -5.3311 33 1 3.7768 0.8726 -5.5474 34 1 2.4777 1.1422 -8.9827 35 1 1.2759 -0.5405 -2.0358 36 1 2.2122 -1.6875 -1.0363 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716609626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:18 Heat of formation + Delta-G solvation = -25.049131 kcal Electronic energy + Delta-G solvation = -14572.792544 eV Core-core repulsion = 12283.393407 eV Total energy + Delta-G solvation = -2289.399137 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.72228 -36.92755 -35.15177 -33.11450 -30.80390 -29.82706 -27.93241 -26.37745 -24.96400 -22.76894 -21.84326 -20.29324 -18.51355 -17.18490 -16.88748 -16.46770 -16.12682 -15.23406 -15.11255 -14.74820 -14.39405 -14.21963 -13.81908 -13.63165 -13.13028 -12.92134 -12.83244 -12.52436 -12.48995 -12.35687 -12.24295 -12.06936 -11.82154 -11.50418 -11.36497 -11.16793 -10.58590 -9.59943 -9.22296 -8.22408 -6.34147 1.38762 1.40359 1.51691 2.38759 3.00004 3.10993 3.32686 3.66358 3.68519 4.04357 4.28235 4.30573 4.44445 4.48847 4.49210 4.60121 4.66172 4.77974 4.85737 4.91929 4.95237 4.99367 5.06675 5.12121 5.23830 5.34195 5.43766 5.64682 5.73355 5.81039 5.99011 6.13647 6.29540 6.50212 6.83052 7.35351 8.89843 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.044228 B = 0.006347 C = 0.006158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.937528 B = 4410.627503 C = 4546.040853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.524 5.524 3 C 0.031 3.969 4 C -0.107 4.107 5 C 0.097 3.903 6 C -0.129 4.129 7 N -0.680 5.680 8 C 0.084 3.916 9 C 0.033 3.967 10 C -0.545 4.545 11 H 0.060 0.940 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.011 3.989 19 H 0.069 0.931 20 H 0.086 0.914 21 H 0.018 0.982 22 H 0.038 0.962 23 H 0.101 0.899 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.333 0.667 30 H 0.016 0.984 31 H 0.063 0.937 32 H -0.013 1.013 33 H -0.006 1.006 34 H 0.264 0.736 35 H 0.029 0.971 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.132 -1.465 16.250 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.248 5.248 3 C -0.097 4.097 4 C -0.145 4.145 5 C 0.005 3.995 6 C -0.186 4.186 7 N -0.310 5.310 8 C -0.045 4.045 9 C -0.005 4.005 10 C -0.583 4.583 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.791 3.209 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.187 1.187 18 C -0.119 4.119 19 H 0.088 0.912 20 H 0.105 0.895 21 H 0.037 0.963 22 H 0.056 0.944 23 H 0.120 0.880 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.150 0.850 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.005 0.995 33 H 0.013 0.987 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.300 -1.615 16.479 16.560 hybrid contribution -1.543 -0.168 -1.699 2.302 sum -1.844 -1.782 14.780 15.000 Atomic orbital electron populations 1.22567 0.87360 1.02260 1.01269 1.64780 1.08725 1.15525 1.35798 1.23357 0.95039 0.89350 1.01937 1.22593 0.96688 0.98210 0.97005 1.21943 0.94216 0.94722 0.88614 1.21798 0.96829 0.98005 1.02004 1.60743 1.51416 1.15440 1.03394 1.21802 0.98178 0.93456 0.91062 1.18911 0.94795 0.95081 0.91673 1.21602 1.49677 0.94042 0.92985 0.92221 1.25982 0.94788 0.97734 1.01220 1.70109 1.51057 1.17935 1.18095 0.85422 0.78580 0.79060 0.77837 1.19744 1.20598 1.18668 1.23676 0.96871 1.00349 0.91033 0.91223 0.89504 0.96290 0.94384 0.88039 0.88795 0.90082 0.92066 0.90337 0.93569 0.84979 0.96570 0.91845 0.99473 0.98725 0.92711 0.95310 0.90269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.30 9.40 127.69 1.20 1.50 16 2 N -0.52 -12.83 5.55 -909.17 -5.05 -17.87 16 3 C 0.03 0.67 6.56 86.65 0.57 1.24 16 4 C -0.11 -2.47 6.26 31.80 0.20 -2.28 16 5 C 0.10 2.76 0.88 4.41 0.00 2.77 16 6 C -0.13 -3.45 8.01 71.98 0.58 -2.87 16 7 N -0.68 -24.42 6.05 -465.81 -2.82 -27.24 16 8 C 0.08 3.58 4.94 86.31 0.43 4.01 16 9 C 0.03 1.79 5.23 29.85 0.16 1.94 16 10 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.00 0.04 5.46 84.65 0.46 0.50 16 13 N -0.93 -57.55 13.29 21.45 0.28 -57.27 16 14 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 18 C 0.01 0.30 5.50 86.45 0.48 0.78 16 19 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 20 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 21 H 0.02 0.44 8.00 -2.38 -0.02 0.42 16 22 H 0.04 0.88 7.96 -2.39 -0.02 0.86 16 23 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.09 1.89 7.87 -2.39 -0.02 1.87 16 25 H 0.08 1.92 8.05 -2.39 -0.02 1.90 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 1.74 8.14 -2.38 -0.02 1.73 16 28 H 0.05 1.35 6.46 -2.39 -0.02 1.33 16 29 H 0.33 11.99 8.71 -89.70 -0.78 11.21 16 30 H 0.02 0.69 6.45 -2.39 -0.02 0.68 16 31 H 0.06 2.71 6.37 -2.39 -0.02 2.70 16 32 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 33 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.03 0.93 6.13 -2.39 -0.01 0.92 16 36 H 0.08 2.20 7.68 -2.39 -0.02 2.19 16 Total: -1.00 -63.87 283.83 -1.00 -64.86 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.25 Total: 14.59 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: 4.30 Total: -23.75 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -7.58 Total: -102.39 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.87 -1.00 -64.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716609626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.816 kcal (2) G-P(sol) polarization free energy of solvation -63.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds