Wall clock time and date at job start Mon Mar 30 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48562 * 111.00344 * 2 1 4 4 C 1.54379 * 104.69842 * 159.09785 * 3 2 1 5 5 C 1.54257 * 105.06256 * 336.08765 * 4 3 2 6 6 C 1.53002 * 110.32409 * 118.99683 * 5 4 3 7 7 N 1.46900 * 110.32571 * 241.10637 * 5 4 3 8 8 C 1.46892 * 111.00217 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47445 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47478 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99968 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00181 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00219 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00198 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47458 * 89.99904 * 14 12 10 16 16 H 1.48503 * 109.47421 * 209.99955 * 14 12 10 17 17 H 1.48502 * 109.47110 * 329.99742 * 14 12 10 18 18 C 1.48856 * 111.13147 * 115.32120 * 2 1 3 19 19 H 1.09007 * 109.47069 * 59.87301 * 1 2 3 20 20 H 1.08995 * 109.47381 * 179.87413 * 1 2 3 21 21 H 1.09000 * 109.47076 * 299.87817 * 1 2 3 22 22 H 1.09002 * 110.41176 * 40.25880 * 3 2 1 23 23 H 1.09002 * 110.41204 * 277.93787 * 3 2 1 24 24 H 1.08998 * 110.32365 * 94.98307 * 4 3 2 25 25 H 1.09002 * 110.32581 * 217.19029 * 4 3 2 26 26 H 1.09004 * 109.46603 * 60.00129 * 6 5 4 27 27 H 1.09004 * 109.46818 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.47437 * 300.00002 * 6 5 4 29 29 H 1.00897 * 111.00291 * 56.04063 * 7 5 4 30 30 H 1.09003 * 109.47469 * 300.00137 * 8 7 5 31 31 H 1.09006 * 109.47007 * 59.99889 * 8 7 5 32 32 H 1.09002 * 109.47525 * 300.00244 * 9 8 7 33 33 H 1.09006 * 109.46844 * 60.00113 * 9 8 7 34 34 H 0.96996 * 120.00138 * 180.02562 * 13 12 10 35 35 H 1.09003 * 110.39541 * 82.21242 * 18 2 1 36 36 H 1.09004 * 110.49212 * 319.84370 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4441 1.2526 0.5328 5 6 3.4469 -0.0504 1.3584 6 6 4.4389 -1.0531 0.7656 7 7 3.7857 0.2339 2.7592 8 6 3.7932 -0.9979 3.5595 9 6 4.1500 -0.6623 5.0090 10 6 4.1570 -1.9259 5.8301 11 1 3.9302 -2.8737 5.3646 12 6 4.4531 -1.8721 7.1756 13 7 4.7299 -0.7181 7.7424 14 14 4.4625 -3.4385 8.1933 15 1 5.8223 -4.0348 8.1715 16 1 4.0835 -3.1214 9.5936 17 1 3.4892 -4.4047 7.6238 18 6 2.0056 -0.5938 1.2551 19 1 -0.3633 0.5158 -0.8889 20 1 -0.3634 -1.0276 -0.0023 21 1 -0.3633 0.5119 0.8911 22 1 1.4099 2.0212 0.6602 23 1 2.0060 1.7924 -1.0118 24 1 4.1482 1.1772 -0.2959 25 1 3.6943 2.1031 1.1669 26 1 5.4404 -0.6230 0.7765 27 1 4.4299 -1.9673 1.3592 28 1 4.1534 -1.2831 -0.2609 29 1 3.1557 0.9170 3.1522 30 1 2.8063 -1.4594 3.5254 31 1 4.5319 -1.6897 3.1547 32 1 5.1370 -0.2011 5.0428 33 1 3.4115 0.0296 5.4140 34 1 4.9385 -0.6803 8.6889 35 1 2.0134 -1.6817 1.1875 36 1 1.4152 -0.2712 2.1127 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716609628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:20 Heat of formation + Delta-G solvation = -3.711312 kcal Electronic energy + Delta-G solvation = -14504.174828 eV Core-core repulsion = 12215.700967 eV Total energy + Delta-G solvation = -2288.473860 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.48937 -35.58022 -33.20463 -31.50231 -29.50008 -28.09904 -26.87296 -24.84422 -23.48756 -21.36912 -20.27354 -19.01890 -16.42544 -15.83571 -15.69523 -14.82811 -14.46354 -14.07165 -13.76324 -13.39247 -13.02373 -12.69073 -12.49548 -12.16696 -11.62936 -11.49191 -11.33194 -11.21766 -11.06439 -11.01691 -10.77308 -10.48903 -10.41625 -9.87888 -9.33974 -9.12613 -8.56448 -8.34509 -7.78740 -5.99185 -4.01705 3.32495 3.38524 3.41641 4.01368 4.44100 4.62540 4.74865 4.91699 5.13228 5.27721 5.32688 5.36828 5.37964 5.50555 5.65922 5.75411 5.84830 5.92778 6.02301 6.08798 6.13869 6.29973 6.39746 6.46992 6.51937 6.76524 6.95842 7.02019 7.53640 7.73731 7.84532 7.97123 8.09503 8.44621 9.05671 9.62106 11.12284 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048885 B = 0.006050 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.637624 B = 4626.627741 C = 4758.764448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.514 5.514 3 C 0.029 3.971 4 C -0.115 4.115 5 C 0.110 3.890 6 C -0.130 4.130 7 N -0.678 5.678 8 C 0.063 3.937 9 C 0.025 3.975 10 C -0.521 4.521 11 H 0.054 0.946 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.006 3.994 19 H 0.066 0.934 20 H 0.067 0.933 21 H 0.027 0.973 22 H 0.041 0.959 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.334 0.666 30 H 0.015 0.985 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.012 0.988 34 H 0.260 0.740 35 H 0.080 0.920 36 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.668 2.832 -14.563 15.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.238 5.238 3 C -0.099 4.099 4 C -0.153 4.153 5 C 0.018 3.982 6 C -0.188 4.188 7 N -0.308 5.308 8 C -0.065 4.065 9 C -0.012 4.012 10 C -0.560 4.560 11 H 0.072 0.928 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.124 4.124 19 H 0.085 0.915 20 H 0.086 0.914 21 H 0.045 0.955 22 H 0.059 0.941 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.152 0.848 30 H 0.034 0.966 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.783 2.595 -14.973 15.931 hybrid contribution -1.389 -0.563 1.521 2.135 sum -6.172 2.032 -13.453 14.940 Atomic orbital electron populations 1.22498 0.88472 1.02071 1.00522 1.65423 1.07768 1.15314 1.35275 1.23160 0.95826 0.90148 1.00803 1.22429 0.95653 0.97806 0.99399 1.21652 0.91875 0.94564 0.90130 1.21814 0.98638 0.98434 0.99885 1.60797 1.56202 1.13450 1.00340 1.22210 0.98343 0.89931 0.96033 1.19070 0.97416 0.96730 0.88021 1.21177 1.47271 0.93725 0.93782 0.92788 1.25000 0.95339 0.96040 0.97975 1.69974 1.47486 1.24196 1.11647 0.86594 0.78352 0.83571 0.79477 1.20598 1.21239 1.19942 1.24049 0.97012 1.00807 0.90528 0.91523 0.91393 0.95467 0.94055 0.90378 0.90672 0.90359 0.92058 0.92249 0.92299 0.84791 0.96648 0.91821 0.95681 0.97005 0.93009 0.90167 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.54 60.06 0.57 0.72 16 2 N -0.51 -6.63 5.67 -237.96 -1.35 -7.98 16 3 C 0.03 0.34 6.48 -2.18 -0.01 0.32 16 4 C -0.11 -1.45 6.39 -25.35 -0.16 -1.62 16 5 C 0.11 1.64 0.94 -130.22 -0.12 1.52 16 6 C -0.13 -1.89 7.99 37.16 0.30 -1.59 16 7 N -0.68 -12.13 6.00 -98.57 -0.59 -12.72 16 8 C 0.06 1.32 4.98 -3.83 -0.02 1.30 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.51 16 10 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 11 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 14 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.01 0.09 4.56 -2.01 -0.01 0.08 16 19 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 20 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.03 0.30 7.98 -51.93 -0.41 -0.12 16 22 H 0.04 0.48 7.97 -51.93 -0.41 0.06 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.89 7.71 -51.93 -0.40 0.49 16 25 H 0.08 1.00 7.94 -51.93 -0.41 0.59 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.92 6.33 -51.93 -0.33 0.59 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.33 5.87 8.66 -39.29 -0.34 5.53 16 30 H 0.02 0.32 7.21 -51.93 -0.37 -0.05 16 31 H 0.06 1.35 6.28 -51.93 -0.33 1.03 16 32 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.08 1.21 7.86 -51.93 -0.41 0.80 16 36 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 LS Contribution 285.18 15.07 4.30 4.30 Total: -1.00 -29.89 285.18 -8.26 -38.15 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -6.32 Total: 0.25 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.01 Total: -12.38 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -1.20 Total: -47.10 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.89 -8.26 -38.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716609628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.435 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds