Wall clock time and date at job start Mon Mar 30 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48562 * 111.00344 * 2 1 4 4 C 1.54379 * 104.69842 * 159.09785 * 3 2 1 5 5 C 1.54257 * 105.06256 * 336.08765 * 4 3 2 6 6 C 1.53002 * 110.32409 * 118.99683 * 5 4 3 7 7 N 1.46900 * 110.32571 * 241.10637 * 5 4 3 8 8 C 1.46892 * 111.00217 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47445 * 179.97438 * 8 7 5 10 10 C 1.50696 * 109.47478 * 179.97438 * 9 8 7 11 11 H 1.08007 * 119.99968 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00181 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00219 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00198 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47458 * 89.99904 * 14 12 10 16 16 H 1.48503 * 109.47421 * 209.99955 * 14 12 10 17 17 H 1.48502 * 109.47110 * 329.99742 * 14 12 10 18 18 C 1.48856 * 111.13147 * 115.32120 * 2 1 3 19 19 H 1.09007 * 109.47069 * 59.87301 * 1 2 3 20 20 H 1.08995 * 109.47381 * 179.87413 * 1 2 3 21 21 H 1.09000 * 109.47076 * 299.87817 * 1 2 3 22 22 H 1.09002 * 110.41176 * 40.25880 * 3 2 1 23 23 H 1.09002 * 110.41204 * 277.93787 * 3 2 1 24 24 H 1.08998 * 110.32365 * 94.98307 * 4 3 2 25 25 H 1.09002 * 110.32581 * 217.19029 * 4 3 2 26 26 H 1.09004 * 109.46603 * 60.00129 * 6 5 4 27 27 H 1.09004 * 109.46818 * 179.97438 * 6 5 4 28 28 H 1.08997 * 109.47437 * 300.00002 * 6 5 4 29 29 H 1.00897 * 111.00291 * 56.04063 * 7 5 4 30 30 H 1.09003 * 109.47469 * 300.00137 * 8 7 5 31 31 H 1.09006 * 109.47007 * 59.99889 * 8 7 5 32 32 H 1.09002 * 109.47525 * 300.00244 * 9 8 7 33 33 H 1.09006 * 109.46844 * 60.00113 * 9 8 7 34 34 H 0.96996 * 120.00138 * 180.02562 * 13 12 10 35 35 H 1.09003 * 110.39541 * 82.21242 * 18 2 1 36 36 H 1.09004 * 110.49212 * 319.84370 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4441 1.2526 0.5328 5 6 3.4469 -0.0504 1.3584 6 6 4.4389 -1.0531 0.7656 7 7 3.7857 0.2339 2.7592 8 6 3.7932 -0.9979 3.5595 9 6 4.1500 -0.6623 5.0090 10 6 4.1570 -1.9259 5.8301 11 1 3.9302 -2.8737 5.3646 12 6 4.4531 -1.8721 7.1756 13 7 4.7299 -0.7181 7.7424 14 14 4.4625 -3.4385 8.1933 15 1 5.8223 -4.0348 8.1715 16 1 4.0835 -3.1214 9.5936 17 1 3.4892 -4.4047 7.6238 18 6 2.0056 -0.5938 1.2551 19 1 -0.3633 0.5158 -0.8889 20 1 -0.3634 -1.0276 -0.0023 21 1 -0.3633 0.5119 0.8911 22 1 1.4099 2.0212 0.6602 23 1 2.0060 1.7924 -1.0118 24 1 4.1482 1.1772 -0.2959 25 1 3.6943 2.1031 1.1669 26 1 5.4404 -0.6230 0.7765 27 1 4.4299 -1.9673 1.3592 28 1 4.1534 -1.2831 -0.2609 29 1 3.1557 0.9170 3.1522 30 1 2.8063 -1.4594 3.5254 31 1 4.5319 -1.6897 3.1547 32 1 5.1370 -0.2011 5.0428 33 1 3.4115 0.0296 5.4140 34 1 4.9385 -0.6803 8.6889 35 1 2.0134 -1.6817 1.1875 36 1 1.4152 -0.2712 2.1127 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716609628.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:20 Heat of formation + Delta-G solvation = -25.386895 kcal Electronic energy + Delta-G solvation = -14505.114751 eV Core-core repulsion = 12215.700967 eV Total energy + Delta-G solvation = -2289.413784 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.63620 -37.00357 -35.14626 -33.05812 -30.79403 -29.71507 -27.94283 -26.45771 -24.95792 -22.74863 -21.77206 -20.27931 -18.49805 -17.19284 -16.81450 -16.45117 -16.14458 -15.20177 -15.01245 -14.70322 -14.61184 -14.18679 -13.75454 -13.60317 -13.14974 -12.92194 -12.80626 -12.49618 -12.46995 -12.32706 -12.30645 -12.10409 -11.71465 -11.52082 -11.32734 -11.16472 -10.57003 -9.58907 -9.25447 -8.21113 -6.32666 1.39724 1.41398 1.52237 2.39801 2.97383 3.12351 3.37826 3.67587 3.72950 4.04473 4.26864 4.31121 4.47113 4.48109 4.52510 4.62165 4.64441 4.79446 4.81808 4.94171 4.95808 4.98452 5.07558 5.12274 5.26529 5.34593 5.45141 5.66787 5.69607 5.82030 5.99936 6.15697 6.31331 6.52987 6.84610 7.36751 8.91108 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048885 B = 0.006050 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.637624 B = 4626.627741 C = 4758.764448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.518 5.518 3 C 0.031 3.969 4 C -0.110 4.110 5 C 0.105 3.895 6 C -0.127 4.127 7 N -0.681 5.681 8 C 0.085 3.915 9 C 0.032 3.968 10 C -0.544 4.544 11 H 0.059 0.941 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.967 3.033 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.011 3.989 19 H 0.086 0.914 20 H 0.069 0.931 21 H 0.023 0.977 22 H 0.043 0.957 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.335 0.665 30 H 0.016 0.984 31 H 0.063 0.937 32 H -0.006 1.006 33 H -0.012 1.012 34 H 0.264 0.736 35 H 0.073 0.927 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 2.195 -15.734 17.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.242 5.242 3 C -0.096 4.096 4 C -0.148 4.148 5 C 0.013 3.987 6 C -0.184 4.184 7 N -0.312 5.312 8 C -0.044 4.044 9 C -0.005 4.005 10 C -0.583 4.583 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.791 3.209 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.188 1.188 18 C -0.119 4.119 19 H 0.105 0.895 20 H 0.088 0.912 21 H 0.042 0.958 22 H 0.061 0.939 23 H 0.118 0.882 24 H 0.106 0.894 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.153 0.847 30 H 0.034 0.966 31 H 0.081 0.919 32 H 0.013 0.987 33 H 0.007 0.993 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.326 1.962 -16.172 17.139 hybrid contribution -1.231 -0.307 1.842 2.236 sum -6.556 1.655 -14.330 15.846 Atomic orbital electron populations 1.22566 0.87221 1.02557 1.01316 1.65441 1.09016 1.15996 1.33782 1.23211 0.94829 0.89582 1.02020 1.22409 0.96906 0.96219 0.99302 1.21805 0.92335 0.96237 0.88340 1.21790 0.98480 0.97582 1.00555 1.60728 1.56792 1.11960 1.01690 1.21783 0.98071 0.91180 0.93367 1.18923 0.94950 0.95435 0.91236 1.21605 1.47416 0.94605 0.94640 0.92238 1.25971 0.94628 0.99729 0.99354 1.70108 1.48214 1.26698 1.12180 0.85428 0.78854 0.79098 0.77546 1.19666 1.20662 1.18763 1.23889 0.96537 1.00437 0.91028 0.89535 0.91172 0.95797 0.93907 0.88245 0.89382 0.90544 0.92201 0.93632 0.90581 0.84704 0.96619 0.91872 0.98745 0.99331 0.92732 0.90888 0.95204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.54 127.69 1.22 1.46 16 2 N -0.52 -12.27 5.67 -906.78 -5.14 -17.41 16 3 C 0.03 0.65 6.48 86.45 0.56 1.22 16 4 C -0.11 -2.58 6.39 31.49 0.20 -2.38 16 5 C 0.10 3.01 0.94 4.42 0.00 3.02 16 6 C -0.13 -3.52 7.99 71.98 0.58 -2.94 16 7 N -0.68 -24.47 6.00 -465.76 -2.80 -27.27 16 8 C 0.08 3.62 4.98 86.30 0.43 4.05 16 9 C 0.03 1.74 5.23 29.85 0.16 1.89 16 10 C -0.54 -31.53 9.11 25.60 0.23 -31.29 16 11 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 12 C 0.00 0.07 5.46 84.65 0.46 0.53 16 13 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 14 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 18 C 0.01 0.32 4.56 86.39 0.39 0.71 16 19 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 20 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.02 0.49 7.98 -2.39 -0.02 0.47 16 22 H 0.04 0.89 7.97 -2.39 -0.02 0.87 16 23 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.09 1.85 7.71 -2.39 -0.02 1.83 16 25 H 0.08 1.83 7.94 -2.39 -0.02 1.81 16 26 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.04 1.38 6.33 -2.39 -0.02 1.36 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.34 11.91 8.66 -89.70 -0.78 11.13 16 30 H 0.02 0.66 7.21 -2.39 -0.02 0.65 16 31 H 0.06 2.71 6.28 -2.38 -0.01 2.69 16 32 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 34 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.07 2.14 7.86 -2.39 -0.02 2.12 16 36 H 0.03 0.92 7.68 -2.39 -0.02 0.90 16 Total: -1.00 -63.73 285.18 -1.14 -64.87 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.25 Total: 14.09 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 4.23 Total: -23.74 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -7.65 Total: -101.89 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.73 -1.14 -64.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716609628.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.485 kcal (2) G-P(sol) polarization free energy of solvation -63.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds