Wall clock time and date at job start Mon Mar 30 2020 02:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47036 * 2 1 4 4 H 1.08997 * 109.46924 * 54.29034 * 3 2 1 5 5 O 1.42904 * 109.47061 * 294.29037 * 3 2 1 6 6 C 1.42900 * 113.99700 * 118.48594 * 5 3 2 7 7 C 1.52999 * 109.46897 * 181.54899 * 6 5 3 8 8 C 1.50702 * 109.47125 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99914 * 359.97438 * 8 7 6 10 10 C 1.37874 * 119.99799 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99699 * 180.02562 * 10 8 7 12 12 Si 1.86805 * 120.00327 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46599 * 90.00435 * 12 10 8 14 14 H 1.48502 * 109.47206 * 210.00434 * 12 10 8 15 15 H 1.48497 * 109.46885 * 330.00836 * 12 10 8 16 16 C 1.52996 * 109.46997 * 174.29138 * 3 2 1 17 17 C 1.53779 * 113.61633 * 180.02562 * 16 3 2 18 18 C 1.53774 * 87.08420 * 139.98012 * 17 16 3 19 19 C 1.53780 * 87.17331 * 334.52479 * 18 17 16 20 20 H 1.09004 * 109.47056 * 298.79026 * 1 2 3 21 21 H 1.09000 * 109.47664 * 58.79100 * 1 2 3 22 22 H 1.09002 * 109.47104 * 178.79218 * 1 2 3 23 23 H 1.09009 * 109.46565 * 240.00273 * 2 1 3 24 24 H 1.08998 * 109.47180 * 120.00238 * 2 1 3 25 25 H 1.09004 * 109.46715 * 301.54397 * 6 5 3 26 26 H 1.08991 * 109.47412 * 61.54604 * 6 5 3 27 27 H 1.09004 * 109.47028 * 299.99306 * 7 6 5 28 28 H 1.08996 * 109.47252 * 59.99177 * 7 6 5 29 29 H 0.97002 * 120.00038 * 179.97438 * 11 10 8 30 30 H 1.09003 * 112.91110 * 48.74754 * 16 3 2 31 31 H 1.08995 * 113.61318 * 25.42762 * 17 16 3 32 32 H 1.09006 * 113.61009 * 254.52812 * 17 16 3 33 33 H 1.09001 * 113.61874 * 89.11274 * 18 17 16 34 34 H 1.08993 * 113.61689 * 219.93465 * 18 17 16 35 35 H 1.09007 * 113.61395 * 140.02193 * 19 18 17 36 36 H 1.08999 * 113.61275 * 270.92721 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5955 1.9850 0.8344 5 8 1.6762 2.0763 -1.2280 6 6 0.8184 3.2077 -1.0663 7 6 0.4646 3.7801 -2.4404 8 6 -0.4406 4.9728 -2.2699 9 1 -0.7345 5.2906 -1.2804 10 6 -0.8943 5.6577 -3.3771 11 7 -1.6838 6.6990 -3.2283 12 14 -0.3865 5.1077 -5.0886 13 1 -1.3702 4.1216 -5.6037 14 1 -0.3438 6.2838 -5.9942 15 1 0.9581 4.4803 -5.0282 16 6 3.5632 1.4449 0.1435 17 6 4.1787 2.8541 0.1552 18 6 5.1269 2.3455 1.2537 19 6 4.0462 1.3077 1.5999 20 1 -0.3633 0.4949 0.9007 21 1 -0.3634 0.5325 -0.8789 22 1 -0.3633 -1.0275 -0.0217 23 1 1.8932 -0.5139 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 -0.0940 2.9016 -0.5544 26 1 1.3283 3.9689 -0.4760 27 1 1.3770 4.0862 -2.9523 28 1 -0.0453 3.0188 -3.0308 29 1 -2.0027 7.1811 -4.0072 30 1 4.0554 0.7588 -0.5459 31 1 3.4910 3.6280 0.4959 32 1 4.6866 3.1164 -0.7730 33 1 6.0466 1.9059 0.8677 34 1 5.3052 3.0713 2.0470 35 1 4.4472 0.3223 1.8374 36 1 3.3223 1.6597 2.3349 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719690321.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:32 Heat of formation + Delta-G solvation = -71.977074 kcal Electronic energy + Delta-G solvation = -14445.002779 eV Core-core repulsion = 12121.275943 eV Total energy + Delta-G solvation = -2323.726837 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.46066 -38.17344 -35.45144 -34.18817 -32.24501 -28.87346 -26.57950 -26.39022 -24.21962 -22.68664 -21.84679 -20.23939 -19.13694 -17.48217 -16.91015 -16.42408 -16.14254 -15.80902 -15.13248 -14.80967 -14.58638 -13.99762 -13.45312 -13.37603 -13.24662 -13.01221 -12.78591 -12.65922 -12.37315 -12.17984 -11.85150 -11.80888 -11.62085 -11.46910 -11.39172 -11.19426 -11.07547 -10.81375 -10.07898 -8.34668 -6.40273 1.34319 1.35803 1.49401 2.33250 2.83008 3.00431 3.66551 3.79465 3.88265 4.01659 4.17198 4.26424 4.31095 4.41046 4.41572 4.49804 4.80762 4.84261 4.87479 4.88650 4.94613 5.02368 5.06358 5.08643 5.09954 5.17870 5.27957 5.38716 5.41015 5.44033 5.56539 5.61974 6.18421 6.49510 6.65645 7.25002 8.81511 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.034017 B = 0.007139 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.916447 B = 3920.936989 C = 4297.515523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.087 3.913 4 H 0.056 0.944 5 O -0.397 6.397 6 C 0.094 3.906 7 C -0.005 4.005 8 C -0.536 4.536 9 H 0.037 0.963 10 C 0.012 3.988 11 N -0.945 5.945 12 Si 0.949 3.051 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.253 1.253 16 C -0.120 4.120 17 C -0.145 4.145 18 C -0.133 4.133 19 C -0.122 4.122 20 H 0.052 0.948 21 H 0.035 0.965 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.094 0.906 25 H 0.038 0.962 26 H 0.035 0.965 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.269 0.731 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.620 -13.902 8.184 19.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C 0.030 3.970 4 H 0.074 0.926 5 O -0.317 6.317 6 C 0.018 3.982 7 C -0.043 4.043 8 C -0.574 4.574 9 H 0.056 0.944 10 C -0.186 4.186 11 N -0.585 5.585 12 Si 0.772 3.228 13 H -0.189 1.189 14 H -0.203 1.203 15 H -0.177 1.177 16 C -0.138 4.138 17 C -0.183 4.183 18 C -0.171 4.171 19 C -0.159 4.159 20 H 0.071 0.929 21 H 0.054 0.946 22 H 0.089 0.911 23 H 0.083 0.917 24 H 0.112 0.888 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.587 -13.831 7.923 19.706 hybrid contribution -0.443 0.568 -0.606 0.941 sum 11.144 -13.263 7.317 18.805 Atomic orbital electron populations 1.21765 0.96161 1.02096 1.01144 1.21815 0.95936 0.95358 1.03136 1.22384 0.94456 0.93855 0.86311 0.92558 1.87853 1.67788 1.44703 1.31314 1.22265 0.91651 0.86382 0.97904 1.19398 0.95857 0.94601 0.94405 1.21219 1.29506 1.12703 0.93939 0.94432 1.25901 0.94280 0.94480 1.03907 1.70038 1.35405 1.20989 1.32051 0.85671 0.80204 0.78321 0.78573 1.18939 1.20326 1.17665 1.22941 0.93873 0.98087 0.98943 1.22854 0.99116 0.96712 0.99571 1.22807 0.97373 0.98781 0.98113 1.22933 0.98178 1.00378 0.94449 0.92898 0.94578 0.91136 0.91660 0.88788 0.94384 0.94654 0.96125 0.96180 0.92174 0.88699 0.91919 0.92543 0.89086 0.90917 0.89495 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.92 9.83 71.98 0.71 -3.22 16 2 C -0.13 -2.97 5.63 30.59 0.17 -2.80 16 3 C 0.09 2.50 2.01 30.59 0.06 2.56 16 4 H 0.06 1.62 7.41 -2.39 -0.02 1.60 16 5 O -0.40 -15.03 9.32 -148.98 -1.39 -16.42 16 6 C 0.09 4.05 5.57 71.98 0.40 4.45 16 7 C -0.01 -0.26 4.41 29.85 0.13 -0.13 16 8 C -0.54 -31.91 9.66 25.60 0.25 -31.66 16 9 H 0.04 2.42 7.99 -2.91 -0.02 2.39 16 10 C 0.01 0.72 5.47 84.65 0.46 1.18 16 11 N -0.94 -59.75 13.96 21.45 0.30 -59.45 16 12 Si 0.95 45.63 27.47 68.60 1.88 47.51 16 13 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 15 H -0.25 -11.65 6.54 99.48 0.65 -11.00 16 16 C -0.12 -2.89 3.36 -10.18 -0.03 -2.92 16 17 C -0.14 -3.76 7.44 31.12 0.23 -3.53 16 18 C -0.13 -2.52 8.07 31.12 0.25 -2.27 16 19 C -0.12 -2.21 7.65 31.21 0.24 -1.97 16 20 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 21 H 0.03 1.12 7.81 -2.39 -0.02 1.10 16 22 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.04 1.51 8.12 -2.39 -0.02 1.50 16 27 H 0.02 1.04 7.20 -2.39 -0.02 1.02 16 28 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 29 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 30 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.06 1.83 8.08 -2.39 -0.02 1.81 16 32 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.08 1.46 7.97 -2.39 -0.02 1.45 16 Total: -1.00 -65.78 292.48 4.61 -61.16 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.95 Total: 7.50 kcal Atomic # 6 Polarization: -43.17 SS G_CDS: 2.87 Total: -40.30 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.30 Total: -59.45 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -1.39 Total: -16.42 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.51 kcal Total: -65.78 4.61 -61.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719690321.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.814 kcal (2) G-P(sol) polarization free energy of solvation -65.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds