Wall clock time and date at job start Mon Mar 30 2020 03:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53003 * 110.37235 * 2 1 4 4 C 1.54377 * 110.32594 * 237.82073 * 2 1 3 5 5 N 1.48560 * 104.59403 * 264.95579 * 4 2 1 6 6 C 1.46904 * 111.00239 * 200.95272 * 5 4 2 7 7 C 1.53003 * 109.47369 * 185.29117 * 6 5 4 8 8 C 1.50694 * 109.47058 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00137 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00182 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99745 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00361 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47182 * 60.00088 * 12 10 8 14 14 H 1.48502 * 109.47282 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47070 * 300.00268 * 12 10 8 16 16 C 1.48559 * 104.22567 * 320.51394 * 5 4 2 17 17 C 1.54259 * 110.32594 * 122.18153 * 2 1 3 18 18 H 1.09000 * 110.32330 * 0.02562 * 17 2 1 19 19 N 1.46898 * 110.41467 * 237.83579 * 17 2 1 20 20 H 1.09003 * 109.47312 * 297.81480 * 1 2 3 21 21 H 1.09003 * 109.47105 * 57.81649 * 1 2 3 22 22 H 1.09002 * 109.47269 * 177.81830 * 1 2 3 23 23 H 1.08994 * 109.47530 * 182.17981 * 3 2 1 24 24 H 1.08999 * 109.47078 * 302.18532 * 3 2 1 25 25 H 1.09007 * 109.46683 * 62.17729 * 3 2 1 26 26 H 1.09004 * 110.41320 * 23.73247 * 4 2 1 27 27 H 1.08995 * 110.41567 * 146.18106 * 4 2 1 28 28 H 1.08996 * 109.47493 * 305.30070 * 6 5 4 29 29 H 1.09004 * 109.46624 * 65.29908 * 6 5 4 30 30 H 1.08997 * 109.46849 * 300.00846 * 7 6 5 31 31 H 1.09004 * 109.46602 * 60.00778 * 7 6 5 32 32 H 0.96995 * 120.00134 * 180.02562 * 11 10 8 33 33 H 1.08999 * 110.40971 * 280.70673 * 16 5 4 34 34 H 1.08999 * 110.41180 * 158.25879 * 16 5 4 35 35 H 1.00894 * 111.00285 * 182.85976 * 19 17 2 36 36 H 1.00905 * 110.99729 * 306.81260 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0661 -0.7710 -1.2253 5 7 2.3147 -2.1466 -0.7225 6 6 3.2648 -2.8595 -1.5869 7 6 3.3945 -4.3093 -1.1157 8 6 4.3696 -5.0403 -2.0020 9 1 4.8493 -4.5225 -2.8195 10 6 4.6494 -6.3702 -1.7695 11 7 4.0649 -7.0009 -0.7744 12 14 5.8587 -7.2762 -2.8677 13 1 7.1853 -6.6126 -2.7963 14 1 5.9835 -8.6837 -2.4112 15 1 5.3682 -7.2525 -4.2693 16 6 2.8806 -1.9422 0.6358 17 6 2.0657 -0.7704 1.2243 18 1 1.2387 -1.1490 1.8250 19 7 2.9310 0.0956 2.0362 20 1 -0.3634 0.4795 0.9089 21 1 -0.3633 0.5474 -0.8698 22 1 -0.3634 -1.0269 -0.0391 23 1 3.1516 1.4175 -0.0391 24 1 1.6759 1.9655 -0.8697 25 1 1.7393 1.9419 0.9089 26 1 1.3212 -0.7859 -2.0209 27 1 2.9940 -0.3227 -1.5803 28 1 2.9039 -2.8425 -2.6152 29 1 4.2386 -2.3724 -1.5356 30 1 3.7554 -4.3262 -0.0873 31 1 2.4206 -4.7964 -1.1670 32 1 4.2621 -7.9364 -0.6105 33 1 3.9360 -1.6771 0.5719 34 1 2.7489 -2.8389 1.2414 35 1 3.3237 -0.4127 2.8142 36 1 3.6572 0.5118 1.4726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720739416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:07 Heat of formation + Delta-G solvation = -9.070591 kcal Electronic energy + Delta-G solvation = -14637.983118 eV Core-core repulsion = 12349.276862 eV Total energy + Delta-G solvation = -2288.706256 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.56849 -34.98977 -32.85209 -32.56377 -29.67898 -27.58254 -26.58533 -25.47023 -23.30389 -21.56062 -19.96649 -18.52854 -16.56456 -16.15568 -15.18145 -14.60072 -14.48680 -14.05684 -13.83921 -13.32674 -12.99081 -12.57488 -12.29132 -12.06415 -11.85689 -11.60012 -11.40814 -11.07826 -10.90216 -10.70976 -10.61792 -10.50640 -10.29667 -9.83513 -9.35160 -9.14657 -8.64491 -8.34548 -7.88503 -6.00362 -4.03242 3.32370 3.36776 3.39091 4.35805 4.48052 4.68128 4.76794 4.98047 5.12313 5.35217 5.40831 5.50959 5.53438 5.76295 5.82205 5.85337 6.00009 6.04689 6.09355 6.13932 6.33052 6.34777 6.37140 6.41720 6.52845 6.93178 7.13298 7.41109 7.45614 7.48155 7.74147 7.87331 8.06750 8.42204 9.03819 9.60424 11.11007 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056717 B = 0.006219 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.559879 B = 4501.115910 C = 4604.729487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.127 4.127 4 C 0.035 3.965 5 N -0.505 5.505 6 C 0.052 3.948 7 C 0.031 3.969 8 C -0.524 4.524 9 H 0.053 0.947 10 C 0.059 3.941 11 N -0.893 5.893 12 Si 0.893 3.107 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.005 3.995 17 C 0.092 3.908 18 H 0.089 0.911 19 N -0.840 5.840 20 H 0.052 0.948 21 H 0.051 0.949 22 H 0.063 0.937 23 H 0.048 0.952 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.061 0.939 29 H 0.019 0.981 30 H 0.014 0.986 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.338 0.662 36 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.782 14.202 2.922 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.066 4.066 3 C -0.185 4.185 4 C -0.093 4.093 5 N -0.229 5.229 6 C -0.075 4.075 7 C -0.006 4.006 8 C -0.563 4.563 9 H 0.071 0.929 10 C -0.143 4.143 11 N -0.532 5.532 12 Si 0.721 3.279 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.126 4.126 17 C -0.020 4.020 18 H 0.107 0.893 19 N -0.370 5.370 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.082 0.918 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.151 0.849 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.937 14.126 3.146 15.291 hybrid contribution 2.328 -0.928 -0.962 2.684 sum -2.609 13.198 2.185 13.629 Atomic orbital electron populations 1.21776 0.93674 1.02271 1.01064 1.21317 0.96274 0.94909 0.94056 1.21684 1.00056 0.95163 1.01604 1.23272 0.99359 0.89840 0.96837 1.65423 1.42386 1.13047 1.02014 1.22503 0.91285 0.97749 0.95953 1.19025 0.97274 0.88076 0.96274 1.21163 1.25185 0.95551 1.14382 0.92897 1.24995 0.96297 0.97595 0.95396 1.69963 1.43002 1.10690 1.29586 0.86649 0.81571 0.78741 0.80973 1.20319 1.21219 1.20193 1.23938 0.96352 0.99483 0.92779 1.22334 0.95694 0.90455 0.93546 0.89260 1.59160 1.26977 1.37242 1.13590 0.92843 0.92974 0.91802 0.93304 0.93362 0.91424 0.90531 0.94539 0.92049 0.96229 0.96785 0.95730 0.92922 0.94491 0.89969 0.84907 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.23 37.15 0.31 -1.25 16 2 C -0.06 -0.83 1.03 -153.13 -0.16 -0.99 16 3 C -0.13 -1.41 7.37 37.16 0.27 -1.14 16 4 C 0.04 0.54 5.58 -2.18 -0.01 0.53 16 5 N -0.50 -9.43 5.37 -229.96 -1.24 -10.67 16 6 C 0.05 1.14 4.75 -3.82 -0.02 1.13 16 7 C 0.03 0.82 5.03 -27.88 -0.14 0.68 16 8 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 9 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 12 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 C 0.00 0.08 5.44 -2.18 -0.01 0.07 16 17 C 0.09 1.25 3.84 -66.33 -0.25 1.00 16 18 H 0.09 1.25 7.71 -51.93 -0.40 0.85 16 19 N -0.84 -9.67 8.21 -3.49 -0.03 -9.70 16 20 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.05 0.53 6.76 -51.93 -0.35 0.18 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.74 7.84 -51.93 -0.41 0.34 16 26 H 0.08 1.14 7.86 -51.93 -0.41 0.73 16 27 H 0.04 0.55 7.68 -51.93 -0.40 0.16 16 28 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 29 H 0.02 0.42 7.88 -51.93 -0.41 0.02 16 30 H 0.01 0.39 7.25 -51.93 -0.38 0.01 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.04 0.64 7.73 -51.93 -0.40 0.23 16 34 H 0.08 1.52 7.76 -51.93 -0.40 1.12 16 35 H 0.34 3.57 9.06 -39.29 -0.36 3.21 16 36 H 0.34 3.73 7.05 -39.29 -0.28 3.45 16 LS Contribution 283.03 15.07 4.27 4.27 Total: -1.00 -30.06 283.03 -7.97 -38.04 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.27 Total: 1.49 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -0.43 Total: -13.79 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: -0.53 Total: -46.84 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.06 -7.97 -38.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720739416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.968 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds