Wall clock time and date at job start Mon Mar 30 2020 03:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53003 * 110.37235 * 2 1 4 4 C 1.54377 * 110.32594 * 237.82073 * 2 1 3 5 5 N 1.48560 * 104.59403 * 264.95579 * 4 2 1 6 6 C 1.46904 * 111.00239 * 200.95272 * 5 4 2 7 7 C 1.53003 * 109.47369 * 185.29117 * 6 5 4 8 8 C 1.50694 * 109.47058 * 180.02562 * 7 6 5 9 9 H 1.08000 * 120.00137 * 0.02562 * 8 7 6 10 10 C 1.37877 * 120.00182 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99745 * 0.02562 * 10 8 7 12 12 Si 1.86792 * 120.00361 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47182 * 60.00088 * 12 10 8 14 14 H 1.48502 * 109.47282 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47070 * 300.00268 * 12 10 8 16 16 C 1.48559 * 104.22567 * 320.51394 * 5 4 2 17 17 C 1.54259 * 110.32594 * 122.18153 * 2 1 3 18 18 H 1.09000 * 110.32330 * 0.02562 * 17 2 1 19 19 N 1.46898 * 110.41467 * 237.83579 * 17 2 1 20 20 H 1.09003 * 109.47312 * 297.81480 * 1 2 3 21 21 H 1.09003 * 109.47105 * 57.81649 * 1 2 3 22 22 H 1.09002 * 109.47269 * 177.81830 * 1 2 3 23 23 H 1.08994 * 109.47530 * 182.17981 * 3 2 1 24 24 H 1.08999 * 109.47078 * 302.18532 * 3 2 1 25 25 H 1.09007 * 109.46683 * 62.17729 * 3 2 1 26 26 H 1.09004 * 110.41320 * 23.73247 * 4 2 1 27 27 H 1.08995 * 110.41567 * 146.18106 * 4 2 1 28 28 H 1.08996 * 109.47493 * 305.30070 * 6 5 4 29 29 H 1.09004 * 109.46624 * 65.29908 * 6 5 4 30 30 H 1.08997 * 109.46849 * 300.00846 * 7 6 5 31 31 H 1.09004 * 109.46602 * 60.00778 * 7 6 5 32 32 H 0.96995 * 120.00134 * 180.02562 * 11 10 8 33 33 H 1.08999 * 110.40971 * 280.70673 * 16 5 4 34 34 H 1.08999 * 110.41180 * 158.25879 * 16 5 4 35 35 H 1.00894 * 111.00285 * 182.85976 * 19 17 2 36 36 H 1.00905 * 110.99729 * 306.81260 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0661 -0.7710 -1.2253 5 7 2.3147 -2.1466 -0.7225 6 6 3.2648 -2.8595 -1.5869 7 6 3.3945 -4.3093 -1.1157 8 6 4.3696 -5.0403 -2.0020 9 1 4.8493 -4.5225 -2.8195 10 6 4.6494 -6.3702 -1.7695 11 7 4.0649 -7.0009 -0.7744 12 14 5.8587 -7.2762 -2.8677 13 1 7.1853 -6.6126 -2.7963 14 1 5.9835 -8.6837 -2.4112 15 1 5.3682 -7.2525 -4.2693 16 6 2.8806 -1.9422 0.6358 17 6 2.0657 -0.7704 1.2243 18 1 1.2387 -1.1490 1.8250 19 7 2.9310 0.0956 2.0362 20 1 -0.3634 0.4795 0.9089 21 1 -0.3633 0.5474 -0.8698 22 1 -0.3634 -1.0269 -0.0391 23 1 3.1516 1.4175 -0.0391 24 1 1.6759 1.9655 -0.8697 25 1 1.7393 1.9419 0.9089 26 1 1.3212 -0.7859 -2.0209 27 1 2.9940 -0.3227 -1.5803 28 1 2.9039 -2.8425 -2.6152 29 1 4.2386 -2.3724 -1.5356 30 1 3.7554 -4.3262 -0.0873 31 1 2.4206 -4.7964 -1.1670 32 1 4.2621 -7.9364 -0.6105 33 1 3.9360 -1.6771 0.5719 34 1 2.7489 -2.8389 1.2414 35 1 3.3237 -0.4127 2.8142 36 1 3.6572 0.5118 1.4726 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720739416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:07 Heat of formation + Delta-G solvation = -30.982407 kcal Electronic energy + Delta-G solvation = -14638.933286 eV Core-core repulsion = 12349.276862 eV Total energy + Delta-G solvation = -2289.656424 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.80935 -36.57954 -34.82126 -33.65560 -31.55896 -28.74130 -27.70051 -27.13180 -24.90411 -23.10320 -21.65116 -19.65112 -18.61352 -17.38721 -16.60112 -16.45093 -16.00577 -15.35698 -15.04485 -14.70225 -14.37579 -14.13296 -13.80583 -13.47169 -13.24421 -12.94490 -12.81574 -12.70230 -12.46441 -12.42470 -11.89006 -11.77974 -11.62061 -11.51725 -11.28630 -11.13182 -10.58834 -9.72293 -9.35900 -8.23688 -6.36292 1.37649 1.41282 1.49408 2.37528 3.08969 3.09335 3.52413 3.60461 3.86879 4.03566 4.22750 4.31825 4.37782 4.47252 4.50522 4.67728 4.79807 4.86189 4.92790 4.97064 5.01530 5.10965 5.13780 5.30305 5.38568 5.41852 5.51873 5.58707 5.73500 5.92754 6.08268 6.21932 6.26613 6.54837 6.80394 7.33274 8.88405 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056717 B = 0.006219 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.559879 B = 4501.115910 C = 4604.729487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.121 4.121 4 C 0.035 3.965 5 N -0.522 5.522 6 C 0.070 3.930 7 C 0.040 3.960 8 C -0.549 4.549 9 H 0.060 0.940 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.969 3.031 13 H -0.266 1.266 14 H -0.281 1.281 15 H -0.266 1.266 16 C 0.005 3.995 17 C 0.103 3.897 18 H 0.086 0.914 19 N -0.830 5.830 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.020 0.980 30 H -0.012 1.012 31 H -0.010 1.010 32 H 0.265 0.735 33 H 0.033 0.967 34 H 0.055 0.945 35 H 0.345 0.655 36 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.327 15.704 2.225 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.061 4.061 3 C -0.178 4.178 4 C -0.092 4.092 5 N -0.246 5.246 6 C -0.058 4.058 7 C 0.003 3.997 8 C -0.587 4.587 9 H 0.078 0.922 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.793 3.207 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.190 1.190 16 C -0.125 4.125 17 C -0.010 4.010 18 H 0.104 0.896 19 N -0.360 5.360 20 H 0.083 0.917 21 H 0.085 0.915 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.007 0.993 31 H 0.009 0.991 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.483 15.657 2.455 16.470 hybrid contribution 2.153 -1.394 -0.698 2.658 sum -2.330 14.264 1.756 14.559 Atomic orbital electron populations 1.21753 0.92774 1.01563 1.02406 1.21330 0.96969 0.95669 0.92117 1.21635 1.00164 0.93543 1.02499 1.23368 0.99843 0.87911 0.98109 1.65309 1.41400 1.15443 1.02414 1.22128 0.92219 0.95140 0.96345 1.18836 0.94899 0.91102 0.94864 1.21598 1.25804 0.96401 1.14944 0.92176 1.26002 0.98232 0.98573 0.96869 1.70108 1.44519 1.11174 1.31375 0.85448 0.79048 0.77252 0.78976 1.19092 1.20637 1.19037 1.23969 0.96781 0.99948 0.91849 1.22210 0.95339 0.89473 0.93981 0.89555 1.59162 1.27148 1.36329 1.13351 0.91650 0.91497 0.93558 0.93095 0.92079 0.90876 0.89999 0.94084 0.91899 0.96154 0.99317 0.99141 0.92659 0.94880 0.92671 0.84190 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 8.23 71.98 0.59 -2.18 16 2 C -0.06 -1.43 1.03 -51.29 -0.05 -1.48 16 3 C -0.12 -2.30 7.37 71.98 0.53 -1.77 16 4 C 0.04 1.03 5.58 86.45 0.48 1.52 16 5 N -0.52 -19.69 5.37 -881.47 -4.73 -24.42 16 6 C 0.07 3.09 4.75 86.30 0.41 3.50 16 7 C 0.04 2.25 5.03 29.85 0.15 2.40 16 8 C -0.55 -32.18 9.11 25.60 0.23 -31.95 16 9 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 10 C 0.00 0.08 5.46 84.65 0.46 0.54 16 11 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 12 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 C 0.01 0.18 5.44 86.45 0.47 0.65 16 17 C 0.10 2.69 3.84 45.81 0.18 2.87 16 18 H 0.09 2.34 7.71 -2.39 -0.02 2.33 16 19 N -0.83 -17.60 8.21 -164.96 -1.35 -18.95 16 20 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 21 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.05 0.96 6.76 -2.39 -0.02 0.94 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.35 7.84 -2.38 -0.02 1.34 16 26 H 0.08 2.30 7.86 -2.39 -0.02 2.28 16 27 H 0.04 1.17 7.68 -2.39 -0.02 1.15 16 28 H 0.06 2.73 8.13 -2.39 -0.02 2.71 16 29 H 0.02 0.89 7.88 -2.38 -0.02 0.87 16 30 H -0.01 -0.69 7.25 -2.39 -0.02 -0.71 16 31 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.03 1.15 7.73 -2.39 -0.02 1.13 16 34 H 0.05 2.16 7.76 -2.39 -0.02 2.14 16 35 H 0.34 6.78 9.06 -89.70 -0.81 5.97 16 36 H 0.34 6.83 7.05 -89.69 -0.63 6.19 16 Total: -1.00 -65.15 283.03 -0.72 -65.88 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -0.40 Total: 14.33 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 3.45 Total: -25.91 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -5.80 Total: -101.09 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -65.15 -0.72 -65.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720739416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.893 kcal (2) G-P(sol) polarization free energy of solvation -65.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds