Wall clock time and date at job start Mon Mar 30 2020 02:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47518 * 2 1 4 4 C 1.53001 * 109.46751 * 120.00086 * 2 1 3 5 5 C 1.50699 * 109.47127 * 184.99685 * 4 2 1 6 6 H 1.08004 * 119.99924 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00204 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00110 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99953 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47009 * 89.99323 * 9 7 5 11 11 H 1.48504 * 109.47312 * 209.99619 * 9 7 5 12 12 H 1.48503 * 109.46913 * 329.99551 * 9 7 5 13 13 O 1.42898 * 109.47139 * 239.99338 * 2 1 3 14 14 C 1.42905 * 113.99822 * 90.00507 * 13 2 1 15 15 H 1.09002 * 110.43473 * 29.29872 * 14 13 2 16 16 C 1.54892 * 110.48706 * 266.75768 * 14 13 2 17 17 C 1.54885 * 102.75046 * 203.24414 * 16 14 13 18 18 C 1.54273 * 104.19251 * 37.94548 * 17 16 14 19 19 H 1.09000 * 110.03478 * 95.72177 * 18 17 16 20 20 C 1.53004 * 110.03062 * 217.10429 * 18 17 16 21 21 C 1.53869 * 106.59806 * 336.38783 * 18 17 16 22 22 H 1.08995 * 109.47518 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47250 * 300.00546 * 1 2 3 24 24 H 1.09008 * 109.46975 * 60.00220 * 1 2 3 25 25 H 1.09001 * 109.46923 * 304.99256 * 4 2 1 26 26 H 1.08996 * 109.47379 * 64.99551 * 4 2 1 27 27 H 0.97006 * 120.00150 * 180.02562 * 8 7 5 28 28 H 1.08999 * 110.75198 * 321.56466 * 16 14 13 29 29 H 1.08999 * 110.75410 * 84.74286 * 16 14 13 30 30 H 1.08998 * 110.48617 * 156.61766 * 17 16 14 31 31 H 1.08998 * 110.48834 * 279.13854 * 17 16 14 32 32 H 1.09001 * 109.46793 * 58.54588 * 20 18 17 33 33 H 1.08994 * 109.47176 * 178.54690 * 20 18 17 34 34 H 1.08996 * 109.47018 * 298.54808 * 20 18 17 35 35 H 1.09003 * 110.03349 * 240.71458 * 21 18 17 36 36 H 1.08998 * 110.03555 * 119.28911 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.6151 1.3128 6 1 4.0789 -0.0863 0.5392 7 6 4.2302 -1.1928 2.3584 8 7 5.5409 -1.1005 2.4136 9 14 3.3012 -2.1079 3.6960 10 1 3.1704 -3.5380 3.3180 11 1 4.0445 -2.0004 4.9771 12 1 1.9502 -1.5127 3.8561 13 8 2.0063 -0.6738 -1.1667 14 6 2.2001 0.1828 -2.2941 15 1 2.4518 1.1916 -1.9668 16 6 0.9329 0.2021 -3.1845 17 6 1.4915 0.6276 -4.5650 18 6 2.8521 -0.0934 -4.6610 19 1 2.7408 -1.0295 -5.2083 20 6 3.8730 0.8051 -5.3621 21 6 3.3025 -0.3762 -3.2172 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6053 -0.2617 2.1370 26 1 1.7514 -1.7715 1.2057 27 1 6.0253 -1.5073 3.1490 28 1 0.4836 -0.7896 -3.2384 29 1 0.2121 0.9314 -2.8148 30 1 0.8275 0.2969 -5.3636 31 1 1.6267 1.7084 -4.6052 32 1 3.9763 1.7383 -4.8084 33 1 4.8367 0.2976 -5.4020 34 1 3.5330 1.0195 -6.3753 35 1 4.2485 0.1266 -3.0159 36 1 3.4098 -1.4498 -3.0629 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721564378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:05 Heat of formation + Delta-G solvation = -77.791806 kcal Electronic energy + Delta-G solvation = -14617.884980 eV Core-core repulsion = 12293.905998 eV Total energy + Delta-G solvation = -2323.978983 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.81395 -36.48121 -33.04539 -31.45892 -30.25704 -28.03342 -27.67297 -24.60642 -22.76893 -20.51350 -20.09738 -19.38955 -16.68024 -16.42871 -15.28378 -14.59795 -14.20890 -13.93872 -13.32086 -13.23959 -12.93197 -12.50345 -12.16558 -11.99232 -11.75310 -11.63080 -11.60155 -11.15728 -10.68993 -10.65346 -10.61382 -10.43946 -10.18968 -9.99060 -9.74459 -9.58546 -9.13335 -8.62265 -8.46321 -5.95954 -3.91854 3.36170 3.42626 3.45530 4.37548 4.51847 4.79620 4.81786 5.00321 5.38827 5.44433 5.50205 5.61356 5.68799 5.70295 5.74412 5.83744 5.88184 5.93864 6.02262 6.09029 6.15486 6.19739 6.25454 6.31280 6.46067 6.56629 6.61013 6.65471 6.78658 7.21010 7.30541 7.84493 8.20864 8.63113 9.10152 9.66208 11.17880 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.038996 B = 0.007722 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.855968 B = 3625.104697 C = 4185.923979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.100 3.900 3 H 0.051 0.949 4 C -0.014 4.014 5 C -0.505 4.505 6 H 0.072 0.928 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.267 1.267 13 O -0.357 6.357 14 C 0.087 3.913 15 H 0.060 0.940 16 C -0.147 4.147 17 C -0.118 4.118 18 C -0.095 4.095 19 H 0.070 0.930 20 C -0.144 4.144 21 C -0.118 4.118 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.046 0.954 25 H 0.028 0.972 26 H 0.020 0.980 27 H 0.261 0.739 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.346 3.566 -12.101 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.042 3.958 3 H 0.069 0.931 4 C -0.051 4.051 5 C -0.543 4.543 6 H 0.090 0.910 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.192 1.192 13 O -0.275 6.275 14 C 0.028 3.972 15 H 0.078 0.922 16 C -0.185 4.185 17 C -0.156 4.156 18 C -0.114 4.114 19 H 0.088 0.912 20 C -0.202 4.202 21 C -0.156 4.156 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.149 3.315 -11.991 14.872 hybrid contribution -0.420 -0.273 0.781 0.928 sum -8.569 3.042 -11.210 14.435 Atomic orbital electron populations 1.22443 0.98187 1.01849 1.00818 1.22164 0.90817 0.95995 0.86774 0.93069 1.19733 0.97824 0.96072 0.91491 1.21041 0.89600 1.34696 1.09010 0.90980 1.25007 0.94729 0.96009 0.97898 1.69915 1.06480 1.45844 1.32348 0.86805 0.80344 0.80709 0.81552 1.20324 1.21498 1.19154 1.88012 1.85980 1.34254 1.19300 1.22893 0.93460 0.93750 0.87078 0.92239 1.23085 0.98328 1.01727 0.95337 1.22361 0.96171 0.99966 0.97105 1.21694 0.94856 0.98653 0.96186 0.91164 1.21893 0.98807 0.99697 0.99765 1.22247 0.98112 1.02736 0.92498 0.92496 0.92414 0.93469 0.95442 0.96175 0.92903 0.90857 0.91925 0.92015 0.91709 0.92589 0.92652 0.93099 0.91190 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.97 9.39 37.16 0.35 -2.62 16 2 C 0.10 2.09 2.67 -26.73 -0.07 2.02 16 3 H 0.05 1.07 7.39 -51.93 -0.38 0.68 16 4 C -0.01 -0.35 3.75 -27.88 -0.10 -0.45 16 5 C -0.51 -14.84 9.43 -34.44 -0.32 -15.16 16 6 H 0.07 2.29 7.99 -52.48 -0.42 1.87 16 7 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 9 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 O -0.36 -7.59 9.46 -35.23 -0.33 -7.93 16 14 C 0.09 1.49 3.32 -25.07 -0.08 1.41 16 15 H 0.06 1.02 7.42 -51.93 -0.39 0.64 16 16 C -0.15 -2.04 5.89 -24.74 -0.15 -2.19 16 17 C -0.12 -1.38 6.36 -25.07 -0.16 -1.54 16 18 C -0.10 -1.18 3.50 -89.50 -0.31 -1.50 16 19 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 20 C -0.14 -1.57 8.84 37.16 0.33 -1.24 16 21 C -0.12 -1.88 6.22 -25.62 -0.16 -2.04 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.05 0.70 6.43 -51.92 -0.33 0.36 16 25 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 26 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.81 7.09 -51.93 -0.37 0.45 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.71 7.86 -51.93 -0.41 0.30 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 1.13 7.67 -51.93 -0.40 0.74 16 36 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 LS Contribution 284.60 15.07 4.29 4.29 Total: -1.00 -31.26 284.60 -7.15 -38.41 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -6.43 Total: -3.05 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -0.78 Total: -21.50 kcal Atomic # 7 Polarization: -28.58 SS G_CDS: 0.77 Total: -27.81 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.33 Total: -7.93 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.26 -7.15 -38.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721564378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.382 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds