Wall clock time and date at job start Mon Mar 30 2020 02:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47518 * 2 1 4 4 C 1.53001 * 109.46751 * 120.00086 * 2 1 3 5 5 C 1.50699 * 109.47127 * 184.99685 * 4 2 1 6 6 H 1.08004 * 119.99924 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00204 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00110 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99953 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47009 * 89.99323 * 9 7 5 11 11 H 1.48504 * 109.47312 * 209.99619 * 9 7 5 12 12 H 1.48503 * 109.46913 * 329.99551 * 9 7 5 13 13 O 1.42898 * 109.47139 * 239.99338 * 2 1 3 14 14 C 1.42905 * 113.99822 * 90.00507 * 13 2 1 15 15 H 1.09002 * 110.43473 * 29.29872 * 14 13 2 16 16 C 1.54892 * 110.48706 * 266.75768 * 14 13 2 17 17 C 1.54885 * 102.75046 * 203.24414 * 16 14 13 18 18 C 1.54273 * 104.19251 * 37.94548 * 17 16 14 19 19 H 1.09000 * 110.03478 * 95.72177 * 18 17 16 20 20 C 1.53004 * 110.03062 * 217.10429 * 18 17 16 21 21 C 1.53869 * 106.59806 * 336.38783 * 18 17 16 22 22 H 1.08995 * 109.47518 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47250 * 300.00546 * 1 2 3 24 24 H 1.09008 * 109.46975 * 60.00220 * 1 2 3 25 25 H 1.09001 * 109.46923 * 304.99256 * 4 2 1 26 26 H 1.08996 * 109.47379 * 64.99551 * 4 2 1 27 27 H 0.97006 * 120.00150 * 180.02562 * 8 7 5 28 28 H 1.08999 * 110.75198 * 321.56466 * 16 14 13 29 29 H 1.08999 * 110.75410 * 84.74286 * 16 14 13 30 30 H 1.08998 * 110.48617 * 156.61766 * 17 16 14 31 31 H 1.08998 * 110.48834 * 279.13854 * 17 16 14 32 32 H 1.09001 * 109.46793 * 58.54588 * 20 18 17 33 33 H 1.08994 * 109.47176 * 178.54690 * 20 18 17 34 34 H 1.08996 * 109.47018 * 298.54808 * 20 18 17 35 35 H 1.09003 * 110.03349 * 240.71458 * 21 18 17 36 36 H 1.08998 * 110.03555 * 119.28911 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5418 -0.6151 1.3128 6 1 4.0789 -0.0863 0.5392 7 6 4.2302 -1.1928 2.3584 8 7 5.5409 -1.1005 2.4136 9 14 3.3012 -2.1079 3.6960 10 1 3.1704 -3.5380 3.3180 11 1 4.0445 -2.0004 4.9771 12 1 1.9502 -1.5127 3.8561 13 8 2.0063 -0.6738 -1.1667 14 6 2.2001 0.1828 -2.2941 15 1 2.4518 1.1916 -1.9668 16 6 0.9329 0.2021 -3.1845 17 6 1.4915 0.6276 -4.5650 18 6 2.8521 -0.0934 -4.6610 19 1 2.7408 -1.0295 -5.2083 20 6 3.8730 0.8051 -5.3621 21 6 3.3025 -0.3762 -3.2172 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6053 -0.2617 2.1370 26 1 1.7514 -1.7715 1.2057 27 1 6.0253 -1.5073 3.1490 28 1 0.4836 -0.7896 -3.2384 29 1 0.2121 0.9314 -2.8148 30 1 0.8275 0.2969 -5.3636 31 1 1.6267 1.7084 -4.6052 32 1 3.9763 1.7383 -4.8084 33 1 4.8367 0.2976 -5.4020 34 1 3.5330 1.0195 -6.3753 35 1 4.2485 0.1266 -3.0159 36 1 3.4098 -1.4498 -3.0629 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721564378.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:05 Heat of formation + Delta-G solvation = -96.727935 kcal Electronic energy + Delta-G solvation = -14618.706112 eV Core-core repulsion = 12293.905998 eV Total energy + Delta-G solvation = -2324.800115 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.14225 -37.87770 -35.10633 -33.26177 -31.36412 -29.80702 -28.99835 -25.72523 -24.67462 -21.87534 -21.70973 -20.51151 -18.91260 -17.88168 -16.77402 -16.09463 -15.76424 -15.50924 -14.76828 -14.42697 -14.23671 -14.17004 -13.84588 -13.49264 -13.34549 -12.96336 -12.83720 -12.55639 -12.51058 -11.91935 -11.75948 -11.73063 -11.62431 -11.46087 -11.40942 -11.23850 -11.21893 -10.75733 -10.14793 -8.27016 -6.29456 1.35430 1.37445 1.48975 2.37095 2.90965 3.11528 3.68342 3.71537 3.95511 4.16463 4.28384 4.35643 4.44529 4.52121 4.56637 4.60668 4.72753 4.76608 4.85063 4.95670 4.99876 5.04654 5.06563 5.14817 5.20535 5.26938 5.31672 5.32984 5.37676 5.44893 5.56228 5.67080 6.29148 6.66144 6.77550 7.32619 8.90374 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.038996 B = 0.007722 C = 0.006687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.855968 B = 3625.104697 C = 4185.923979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.099 3.901 3 H 0.042 0.958 4 C -0.014 4.014 5 C -0.516 4.516 6 H 0.025 0.975 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.242 1.242 13 O -0.388 6.388 14 C 0.074 3.926 15 H 0.051 0.949 16 C -0.137 4.137 17 C -0.111 4.111 18 C -0.090 4.090 19 H 0.079 0.921 20 C -0.142 4.142 21 C -0.123 4.123 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.018 0.982 27 H 0.265 0.735 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.936 3.628 -12.664 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.060 0.940 4 C -0.051 4.051 5 C -0.554 4.554 6 H 0.044 0.956 7 C -0.197 4.197 8 N -0.596 5.596 9 Si 0.776 3.224 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.165 1.165 13 O -0.308 6.308 14 C 0.016 3.984 15 H 0.069 0.931 16 C -0.175 4.175 17 C -0.148 4.148 18 C -0.108 4.108 19 H 0.097 0.903 20 C -0.199 4.199 21 C -0.160 4.160 22 H 0.077 0.923 23 H 0.092 0.908 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.036 0.964 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.755 3.392 -12.574 16.890 hybrid contribution 0.508 -0.257 0.895 1.060 sum -10.248 3.135 -11.679 15.851 Atomic orbital electron populations 1.22310 0.94364 1.02608 1.02803 1.22080 0.93676 0.94635 0.85441 0.94003 1.19720 0.94572 0.96575 0.94247 1.21323 0.92263 1.34033 1.07820 0.95618 1.26039 0.95668 0.97073 1.00878 1.70081 1.08570 1.47322 1.33644 0.85628 0.79842 0.79184 0.77792 1.19657 1.20783 1.16522 1.87946 1.86655 1.35816 1.20369 1.23169 0.95935 0.92726 0.86519 0.93091 1.22994 0.96681 1.02091 0.95726 1.22365 0.95545 1.00542 0.96339 1.21680 0.95915 0.99719 0.93514 0.90270 1.21874 0.98274 0.99025 1.00771 1.22304 0.97518 1.00954 0.95270 0.92301 0.90812 0.91139 0.94163 0.96365 0.92642 0.91179 0.90555 0.89536 0.90609 0.92987 0.93034 0.90743 0.92793 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.11 9.39 71.98 0.68 -4.44 16 2 C 0.10 4.13 2.67 30.59 0.08 4.21 16 3 H 0.04 1.78 7.39 -2.39 -0.02 1.76 16 4 C -0.01 -0.68 3.75 29.85 0.11 -0.57 16 5 C -0.52 -31.34 9.43 25.60 0.24 -31.10 16 6 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 7 C 0.00 -0.05 5.47 84.66 0.46 0.41 16 8 N -0.95 -62.17 13.96 21.45 0.30 -61.87 16 9 Si 0.95 45.80 27.47 68.60 1.88 47.68 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 13 O -0.39 -16.84 9.46 -148.98 -1.41 -18.25 16 14 C 0.07 2.58 3.32 31.67 0.11 2.68 16 15 H 0.05 1.81 7.42 -2.39 -0.02 1.79 16 16 C -0.14 -3.53 5.89 31.88 0.19 -3.35 16 17 C -0.11 -2.26 6.36 31.67 0.20 -2.06 16 18 C -0.09 -2.11 3.50 -10.07 -0.04 -2.14 16 19 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 20 C -0.14 -2.87 8.84 71.98 0.64 -2.24 16 21 C -0.12 -4.04 6.22 31.32 0.19 -3.84 16 22 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.07 1.87 6.43 -2.38 -0.02 1.85 16 25 H 0.04 1.87 7.20 -2.39 -0.02 1.86 16 26 H 0.02 0.90 7.57 -2.39 -0.02 0.88 16 27 H 0.26 16.03 8.31 -92.70 -0.77 15.26 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 1.75 7.09 -2.39 -0.02 1.74 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.41 7.86 -2.39 -0.02 1.39 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.88 7.67 -2.39 -0.02 1.86 16 36 H 0.05 1.98 8.07 -2.39 -0.02 1.96 16 Total: -1.00 -69.75 284.60 4.59 -65.16 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.96 Total: 9.71 kcal Atomic # 6 Polarization: -45.30 SS G_CDS: 2.86 Total: -42.43 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: 0.30 Total: -61.87 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -1.41 Total: -18.25 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.88 Total: 47.68 kcal Total: -69.75 4.59 -65.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721564378.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.568 kcal (2) G-P(sol) polarization free energy of solvation -69.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds