Wall clock time and date at job start Mon Mar 30 2020 02:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 119.99927 * 2 1 4 4 H 1.48497 * 109.47400 * 240.27845 * 3 2 1 5 5 H 1.48505 * 109.46829 * 0.27747 * 3 2 1 6 6 H 1.48505 * 109.47018 * 120.27346 * 3 2 1 7 7 C 1.37874 * 120.00286 * 180.27459 * 2 1 3 8 8 H 1.07991 * 120.00170 * 179.72449 * 7 2 1 9 9 C 1.50701 * 119.99820 * 359.72902 * 7 2 1 10 10 C 1.52997 * 109.47192 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47201 * 174.85932 * 10 9 7 12 12 C 1.47894 * 111.00080 * 175.71049 * 11 10 9 13 13 C 1.53990 * 107.06078 * 214.15605 * 12 11 10 14 14 C 1.54597 * 105.13723 * 1.22339 * 13 12 11 15 15 H 1.09000 * 110.72604 * 263.42059 * 14 13 12 16 16 C 1.53005 * 110.72686 * 140.31753 * 14 13 12 17 17 C 1.52994 * 109.47111 * 66.45157 * 16 14 13 18 18 N 1.46900 * 109.47176 * 180.02562 * 17 16 14 19 19 C 1.48533 * 111.00002 * 58.31053 * 11 10 9 20 20 H 0.97003 * 119.99705 * 359.72302 * 1 2 3 21 21 H 1.09003 * 109.46656 * 299.99829 * 9 7 2 22 22 H 1.09000 * 109.46997 * 59.99459 * 9 7 2 23 23 H 1.09000 * 109.46838 * 294.85543 * 10 9 7 24 24 H 1.08998 * 109.47237 * 54.85959 * 10 9 7 25 25 H 1.09004 * 109.92019 * 333.50714 * 12 11 10 26 26 H 1.09001 * 109.91798 * 94.80013 * 12 11 10 27 27 H 1.08996 * 110.31552 * 120.13627 * 13 12 11 28 28 H 1.08995 * 110.31178 * 242.21361 * 13 12 11 29 29 H 1.08992 * 109.47250 * 186.45784 * 16 14 13 30 30 H 1.09000 * 109.46267 * 306.45634 * 16 14 13 31 31 H 1.09002 * 109.47579 * 300.00408 * 17 16 14 32 32 H 1.09005 * 109.47032 * 60.00114 * 17 16 14 33 33 H 1.00900 * 110.99774 * 179.97438 * 18 17 16 34 34 H 1.00892 * 110.99932 * 303.95444 * 18 17 16 35 35 H 1.08998 * 110.66763 * 278.15854 * 19 11 10 36 36 H 1.08999 * 110.66792 * 41.28746 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.0979 1.6995 -1.2158 5 1 1.2841 2.7465 0.0068 6 1 3.1080 1.6936 1.2092 7 6 2.0046 -1.1940 -0.0057 8 1 3.0845 -1.1939 -0.0102 9 6 1.2512 -2.4991 -0.0058 10 6 2.2454 -3.6620 -0.0133 11 7 1.5157 -4.9309 0.1107 12 6 2.4357 -6.0840 0.0043 13 6 1.6644 -7.2136 -0.7030 14 6 0.2722 -6.6182 -1.0147 15 1 -0.4481 -6.8986 -0.2462 16 6 -0.2111 -7.0654 -2.3958 17 6 -0.4611 -8.5747 -2.3847 18 7 -0.9245 -9.0041 -3.7108 19 6 0.5357 -5.0915 -0.9938 20 1 -0.4850 0.8401 0.0041 21 1 0.6282 -2.5590 0.8867 22 1 0.6208 -2.5546 -0.8933 23 1 2.8056 -3.6549 -0.9483 24 1 2.9349 -3.5560 0.8242 25 1 3.3112 -5.8076 -0.5835 26 1 2.7406 -6.4088 0.9991 27 1 2.1701 -7.4967 -1.6262 28 1 1.5694 -8.0769 -0.0444 29 1 -1.1368 -6.5456 -2.6427 30 1 0.5485 -6.8284 -3.1408 31 1 0.4646 -9.0945 -2.1378 32 1 -1.2206 -8.8117 -1.6396 33 1 -1.0964 -9.9982 -3.7294 34 1 -1.7460 -8.4896 -3.9909 35 1 -0.3823 -4.5456 -0.7761 36 1 0.9650 -4.7623 -1.9401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723678228.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:09 Heat of formation + Delta-G solvation = -18.998129 kcal Electronic energy + Delta-G solvation = -14172.241200 eV Core-core repulsion = 11883.104453 eV Total energy + Delta-G solvation = -2289.136746 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.88110 -35.70980 -33.56689 -32.11942 -30.03266 -28.19485 -26.72452 -24.09128 -22.33124 -21.34788 -19.72516 -19.66896 -16.47100 -16.27858 -15.45831 -15.07433 -14.51099 -14.32263 -13.87888 -13.83784 -13.31030 -12.61559 -12.12378 -11.96415 -11.77465 -11.60526 -11.35360 -10.96735 -10.81860 -10.57805 -10.52558 -10.35604 -10.25926 -9.85622 -9.31016 -9.10939 -8.89750 -8.32155 -7.76050 -5.97404 -3.99809 3.35219 3.39264 3.41874 4.30081 4.46054 4.67182 4.78938 4.92410 5.12999 5.23284 5.27589 5.38467 5.52030 5.63650 5.71227 5.90042 6.01174 6.04859 6.07926 6.16114 6.22478 6.31092 6.47699 6.52559 6.60055 6.92491 6.98222 7.21565 7.50773 7.54437 7.77249 7.91587 8.10022 8.45866 9.06997 9.63701 11.14039 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.051159 B = 0.005517 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.183316 B = 5073.853817 C = 5424.263651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.054 3.946 11 N -0.519 5.519 12 C 0.033 3.967 13 C -0.124 4.124 14 C -0.092 4.092 15 H 0.079 0.921 16 C -0.109 4.109 17 C 0.062 3.938 18 N -0.855 5.855 19 C 0.047 3.953 20 H 0.261 0.739 21 H 0.025 0.975 22 H 0.016 0.984 23 H 0.019 0.981 24 H 0.062 0.938 25 H 0.038 0.962 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.338 0.662 34 H 0.340 0.660 35 H 0.083 0.917 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 -15.913 -3.745 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.073 4.073 11 N -0.243 5.243 12 C -0.096 4.096 13 C -0.162 4.162 14 C -0.112 4.112 15 H 0.097 0.903 16 C -0.147 4.147 17 C -0.069 4.069 18 N -0.384 5.384 19 C -0.081 4.081 20 H 0.070 0.930 21 H 0.043 0.957 22 H 0.034 0.966 23 H 0.038 0.962 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.043 0.957 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.101 0.899 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.244 -15.507 -3.483 15.895 hybrid contribution 0.054 0.717 -0.251 0.762 sum -0.191 -14.790 -3.734 15.255 Atomic orbital electron populations 1.69966 1.06030 1.26660 1.50677 1.24990 0.94833 0.99157 0.95288 0.86653 0.79577 0.83131 0.78598 1.20296 1.21262 1.20214 1.21164 0.92961 0.91091 1.50899 0.92837 1.19102 0.93986 0.90302 0.97706 1.22499 0.97267 0.89011 0.98535 1.64844 1.14212 1.02339 1.42930 1.22848 0.95129 0.91785 0.99794 1.22469 0.95782 0.97957 1.00006 1.22095 0.96759 0.95863 0.96470 0.90294 1.21571 1.01868 0.94361 0.96939 1.21831 0.99609 0.96526 0.88940 1.58724 1.41026 1.09547 1.29071 1.23169 0.97570 0.94067 0.93258 0.92963 0.95684 0.96609 0.96233 0.91954 0.94356 0.91125 0.91741 0.91695 0.91902 0.91169 0.91035 0.95658 0.84968 0.84780 0.89859 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.71 4.65 -27.88 -0.13 0.58 16 10 C 0.05 1.20 4.78 -3.82 -0.02 1.18 16 11 N -0.52 -9.96 5.35 -230.46 -1.23 -11.19 16 12 C 0.03 0.51 6.70 -2.76 -0.02 0.49 16 13 C -0.12 -1.59 5.66 -25.38 -0.14 -1.73 16 14 C -0.09 -1.25 3.09 -88.76 -0.27 -1.52 16 15 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 16 C -0.11 -1.28 4.87 -26.73 -0.13 -1.41 16 17 C 0.06 0.61 6.63 -3.83 -0.03 0.59 16 18 N -0.85 -7.80 9.62 -10.37 -0.10 -7.90 16 19 C 0.05 0.83 4.81 -1.90 -0.01 0.82 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.02 0.44 7.18 -51.93 -0.37 0.07 16 23 H 0.02 0.43 7.97 -51.93 -0.41 0.01 16 24 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 25 H 0.04 0.60 7.67 -51.93 -0.40 0.20 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.78 7.80 -51.93 -0.41 0.37 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 31 H 0.07 0.71 7.50 -51.93 -0.39 0.32 16 32 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.34 2.43 9.08 -39.29 -0.36 2.08 16 34 H 0.34 2.78 8.99 -39.30 -0.35 2.42 16 35 H 0.08 1.58 7.77 -51.93 -0.40 1.18 16 36 H 0.04 0.78 7.92 -51.93 -0.41 0.37 16 LS Contribution 287.88 15.07 4.34 4.34 Total: -1.00 -30.75 287.88 -8.86 -39.62 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.42 Total: -0.42 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -1.16 Total: -14.84 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.60 Total: -45.61 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.75 -8.86 -39.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723678228.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.620 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds