Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46798 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99709 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47079 * 324.99483 * 11 10 9 13 13 C 1.53002 * 109.47467 * 85.00131 * 11 10 9 14 14 C 1.53000 * 109.46792 * 59.99469 * 13 11 10 15 15 C 1.53004 * 109.47347 * 60.00628 * 14 13 11 16 16 C 1.53002 * 109.46662 * 299.99452 * 15 14 13 17 17 H 1.08998 * 109.46839 * 300.00090 * 16 15 14 18 18 C 1.52995 * 109.46826 * 180.02562 * 16 15 14 19 19 N 1.46896 * 109.47310 * 65.00028 * 18 16 15 20 20 C 1.52998 * 109.47314 * 60.00142 * 16 15 14 21 21 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 23 23 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 24 24 H 1.00901 * 110.99951 * 303.95126 * 10 9 7 25 25 H 1.08998 * 109.46839 * 179.97438 * 13 11 10 26 26 H 1.08994 * 109.46628 * 299.99643 * 13 11 10 27 27 H 1.09007 * 109.46622 * 180.02562 * 14 13 11 28 28 H 1.08998 * 109.47525 * 299.99699 * 14 13 11 29 29 H 1.09001 * 109.46686 * 59.99267 * 15 14 13 30 30 H 1.08992 * 109.47108 * 179.97438 * 15 14 13 31 31 H 1.09001 * 109.47282 * 185.00385 * 18 16 15 32 32 H 1.09005 * 109.47378 * 305.00092 * 18 16 15 33 33 H 1.00899 * 111.00078 * 180.02562 * 19 18 16 34 34 H 1.00904 * 110.99996 * 303.95125 * 19 18 16 35 35 H 1.08994 * 109.47472 * 179.97438 * 20 16 15 36 36 H 1.09007 * 109.47145 * 59.99549 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5053 -4.9070 -0.0001 12 1 0.5920 -4.8253 0.5891 13 6 1.1521 -5.2951 -1.4373 14 6 2.4343 -5.4098 -2.2643 15 6 3.3402 -6.4816 -1.6547 16 6 3.6934 -6.0935 -0.2175 17 1 4.2130 -5.1353 -0.2171 18 6 4.5999 -7.1649 0.3919 19 7 5.8795 -7.1916 -0.3290 20 6 2.4114 -5.9788 0.6096 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 0.8902 23 1 0.6248 -2.5571 -0.8897 24 1 2.8405 -3.5487 -0.7809 25 1 0.6329 -6.2535 -1.4377 26 1 0.5068 -4.5316 -1.8715 27 1 2.1826 -5.6858 -3.2883 28 1 2.9539 -4.4516 -2.2639 29 1 2.8205 -7.4397 -1.6551 30 1 4.2534 -6.5635 -2.2441 31 1 4.7792 -6.9347 1.4421 32 1 4.1168 -8.1386 0.3108 33 1 6.4961 -7.8921 0.0546 34 1 5.7350 -7.3394 -1.3167 35 1 2.6630 -5.7028 1.6335 36 1 1.8917 -6.9370 0.6091 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724088048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = -26.865057 kcal Electronic energy + Delta-G solvation = -14651.635876 eV Core-core repulsion = 12362.157994 eV Total energy + Delta-G solvation = -2289.477882 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.08591 -35.33374 -33.35387 -31.88360 -30.40309 -28.92805 -25.77803 -24.51951 -22.11168 -21.73156 -20.59595 -18.45328 -16.45098 -16.01550 -15.18260 -14.83288 -14.52470 -14.40365 -13.68285 -13.48334 -13.09375 -12.79542 -12.16361 -11.74675 -11.69820 -11.56532 -11.26275 -11.24042 -10.81977 -10.65981 -10.56647 -10.14101 -9.89270 -9.76732 -9.58080 -9.08555 -8.68091 -8.43901 -7.15499 -5.98730 -4.00081 3.34809 3.40711 3.46026 4.47317 4.58329 4.95405 4.99888 5.04926 5.32691 5.37203 5.48840 5.52259 5.67772 5.73511 5.81474 5.89086 5.92789 6.02829 6.08054 6.22940 6.31590 6.48144 6.54686 6.67159 6.76540 6.81690 7.14953 7.35056 7.40029 7.52217 7.85215 8.20204 8.50345 8.71745 9.10071 9.64734 11.12352 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039931 B = 0.006975 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.032571 B = 4013.314647 C = 4297.659007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.061 0.939 9 C 0.193 3.807 10 N -0.682 5.682 11 C 0.086 3.914 12 H 0.069 0.931 13 C -0.148 4.148 14 C -0.118 4.118 15 C -0.111 4.111 16 C -0.086 4.086 17 H 0.090 0.910 18 C 0.067 3.933 19 N -0.851 5.851 20 C -0.097 4.097 21 H 0.260 0.740 22 H 0.026 0.974 23 H -0.015 1.015 24 H 0.329 0.671 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.019 0.981 33 H 0.335 0.665 34 H 0.338 0.662 35 H 0.066 0.934 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.841 -14.542 -2.493 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.314 5.314 11 C -0.026 4.026 12 H 0.087 0.913 13 C -0.187 4.187 14 C -0.156 4.156 15 C -0.149 4.149 16 C -0.104 4.104 17 H 0.109 0.891 18 C -0.064 4.064 19 N -0.381 5.381 20 C -0.136 4.136 21 H 0.070 0.930 22 H 0.044 0.956 23 H 0.003 0.997 24 H 0.149 0.851 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.038 0.962 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.085 0.915 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.853 -13.641 -1.534 14.923 hybrid contribution -0.329 -0.083 -1.201 1.248 sum 5.524 -13.724 -2.735 15.045 Atomic orbital electron populations 1.69966 1.06069 1.26666 1.51172 1.24986 0.94853 0.99309 0.95443 0.86509 0.79856 0.83129 0.77992 1.20778 1.21284 1.19755 1.21218 0.93507 0.90369 1.49986 0.92050 1.19564 0.90713 0.87508 0.95558 1.60823 1.20657 1.00876 1.49036 1.21471 0.96259 0.91151 0.93676 0.91266 1.22187 0.97404 1.01088 0.98059 1.21487 0.96468 0.99425 0.98244 1.21572 0.98734 0.98292 0.96274 1.21148 0.95619 0.99640 0.94039 0.89142 1.21863 0.89178 0.96933 0.98389 1.58744 1.14854 1.56782 1.07670 1.21522 0.95203 0.97380 0.99474 0.93006 0.95626 0.99680 0.85124 0.92688 0.91896 0.92641 0.91393 0.92953 0.92500 0.91123 0.96238 0.85300 0.84895 0.91539 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.08 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.79 9.32 -34.44 -0.32 -15.11 16 8 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 9 C 0.19 5.14 5.24 -4.98 -0.03 5.12 16 10 N -0.68 -14.75 5.76 -107.99 -0.62 -15.38 16 11 C 0.09 1.53 2.86 -67.71 -0.19 1.33 16 12 H 0.07 1.32 7.80 -51.93 -0.41 0.91 16 13 C -0.15 -2.37 5.52 -26.73 -0.15 -2.51 16 14 C -0.12 -1.70 5.67 -26.73 -0.15 -1.85 16 15 C -0.11 -1.38 4.98 -26.73 -0.13 -1.52 16 16 C -0.09 -1.17 2.16 -90.62 -0.20 -1.37 16 17 H 0.09 1.49 7.21 -51.93 -0.37 1.12 16 18 C 0.07 0.79 6.24 -3.83 -0.02 0.76 16 19 N -0.85 -9.15 9.62 -10.37 -0.10 -9.25 16 20 C -0.10 -1.44 4.92 -26.73 -0.13 -1.57 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.03 0.74 8.06 -51.93 -0.42 0.32 16 23 H -0.01 -0.41 7.43 -51.93 -0.39 -0.80 16 24 H 0.33 6.94 5.55 -39.29 -0.22 6.72 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.13 7.45 -51.93 -0.39 0.75 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.09 6.26 -51.93 -0.32 0.76 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.65 6.68 -51.93 -0.35 0.30 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.34 2.91 9.08 -39.29 -0.36 2.55 16 34 H 0.34 3.29 7.25 -39.29 -0.28 3.00 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 277.75 15.07 4.19 4.19 Total: -1.00 -30.09 277.75 -8.25 -38.33 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.01 Total: 6.80 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -1.42 Total: -15.22 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.02 Total: -51.16 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.09 -8.25 -38.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724088048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.470 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds