Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46798 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99709 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47079 * 324.99483 * 11 10 9 13 13 C 1.53002 * 109.47467 * 85.00131 * 11 10 9 14 14 C 1.53000 * 109.46792 * 59.99469 * 13 11 10 15 15 C 1.53004 * 109.47347 * 60.00628 * 14 13 11 16 16 C 1.53002 * 109.46662 * 299.99452 * 15 14 13 17 17 H 1.08998 * 109.46839 * 300.00090 * 16 15 14 18 18 C 1.52995 * 109.46826 * 180.02562 * 16 15 14 19 19 N 1.46896 * 109.47310 * 65.00028 * 18 16 15 20 20 C 1.52998 * 109.47314 * 60.00142 * 16 15 14 21 21 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 23 23 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 24 24 H 1.00901 * 110.99951 * 303.95126 * 10 9 7 25 25 H 1.08998 * 109.46839 * 179.97438 * 13 11 10 26 26 H 1.08994 * 109.46628 * 299.99643 * 13 11 10 27 27 H 1.09007 * 109.46622 * 180.02562 * 14 13 11 28 28 H 1.08998 * 109.47525 * 299.99699 * 14 13 11 29 29 H 1.09001 * 109.46686 * 59.99267 * 15 14 13 30 30 H 1.08992 * 109.47108 * 179.97438 * 15 14 13 31 31 H 1.09001 * 109.47282 * 185.00385 * 18 16 15 32 32 H 1.09005 * 109.47378 * 305.00092 * 18 16 15 33 33 H 1.00899 * 111.00078 * 180.02562 * 19 18 16 34 34 H 1.00904 * 110.99996 * 303.95125 * 19 18 16 35 35 H 1.08994 * 109.47472 * 179.97438 * 20 16 15 36 36 H 1.09007 * 109.47145 * 59.99549 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5053 -4.9070 -0.0001 12 1 0.5920 -4.8253 0.5891 13 6 1.1521 -5.2951 -1.4373 14 6 2.4343 -5.4098 -2.2643 15 6 3.3402 -6.4816 -1.6547 16 6 3.6934 -6.0935 -0.2175 17 1 4.2130 -5.1353 -0.2171 18 6 4.5999 -7.1649 0.3919 19 7 5.8795 -7.1916 -0.3290 20 6 2.4114 -5.9788 0.6096 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 0.8902 23 1 0.6248 -2.5571 -0.8897 24 1 2.8405 -3.5487 -0.7809 25 1 0.6329 -6.2535 -1.4377 26 1 0.5068 -4.5316 -1.8715 27 1 2.1826 -5.6858 -3.2883 28 1 2.9539 -4.4516 -2.2639 29 1 2.8205 -7.4397 -1.6551 30 1 4.2534 -6.5635 -2.2441 31 1 4.7792 -6.9347 1.4421 32 1 4.1168 -8.1386 0.3108 33 1 6.4961 -7.8921 0.0546 34 1 5.7350 -7.3394 -1.3167 35 1 2.6630 -5.7028 1.6335 36 1 1.8917 -6.9370 0.6091 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724088048.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = -48.753002 kcal Electronic energy + Delta-G solvation = -14652.585008 eV Core-core repulsion = 12362.157994 eV Total energy + Delta-G solvation = -2290.427014 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37447 -36.68840 -35.11822 -33.60636 -31.57752 -30.43619 -27.77225 -25.58940 -23.82522 -23.32270 -21.75496 -19.79387 -18.55160 -17.15042 -16.68168 -16.31190 -16.03590 -15.64984 -15.27946 -14.70167 -14.41613 -14.17388 -13.88200 -13.49414 -13.24213 -12.94130 -12.79700 -12.58954 -12.42995 -12.40063 -11.96259 -11.87774 -11.48056 -11.13280 -10.98100 -10.85312 -10.65039 -9.49390 -8.98804 -8.22694 -6.33882 1.39698 1.41695 1.53739 2.39701 3.10143 3.64680 3.68829 3.83643 3.92642 3.99125 4.27668 4.40362 4.50182 4.60990 4.63697 4.74250 4.76798 4.82946 4.92415 5.02615 5.10878 5.15687 5.23077 5.32646 5.36345 5.46281 5.53161 5.62841 5.68175 6.04922 6.34741 6.51851 6.70215 6.77925 6.93869 7.37283 8.88820 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039931 B = 0.006975 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.032571 B = 4013.314647 C = 4297.659007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.211 3.789 10 N -0.681 5.681 11 C 0.078 3.922 12 H 0.049 0.951 13 C -0.142 4.142 14 C -0.117 4.117 15 C -0.102 4.102 16 C -0.082 4.082 17 H 0.058 0.942 18 C 0.074 3.926 19 N -0.861 5.861 20 C -0.089 4.089 21 H 0.265 0.735 22 H -0.006 1.006 23 H -0.040 1.040 24 H 0.334 0.666 25 H 0.081 0.919 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.349 0.651 34 H 0.345 0.655 35 H 0.054 0.946 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.238 -15.716 -3.041 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.083 3.917 10 N -0.313 5.313 11 C -0.032 4.032 12 H 0.067 0.933 13 C -0.181 4.181 14 C -0.155 4.155 15 C -0.140 4.140 16 C -0.101 4.101 17 H 0.076 0.924 18 C -0.057 4.057 19 N -0.393 5.393 20 C -0.127 4.127 21 H 0.074 0.926 22 H 0.012 0.988 23 H -0.023 1.023 24 H 0.153 0.847 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.073 0.927 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.266 -14.848 -2.087 16.662 hybrid contribution -0.800 0.235 -1.022 1.319 sum 6.466 -14.613 -3.109 16.279 Atomic orbital electron populations 1.70095 1.07799 1.27951 1.51614 1.25957 0.95791 1.03367 0.94570 0.85339 0.78494 0.77981 0.78532 1.19586 1.20555 1.18986 1.21564 0.93683 0.91660 1.50521 0.92077 1.19173 0.90702 0.89094 0.92766 1.60731 1.19915 1.01275 1.49362 1.21619 0.96082 0.90272 0.95233 0.93256 1.22101 0.98196 1.01331 0.96510 1.21480 0.95612 0.99190 0.99174 1.21521 0.99155 0.98161 0.95138 1.21055 0.94969 0.99034 0.95036 0.92351 1.21713 0.89356 0.96843 0.97797 1.58679 1.14639 1.57740 1.08227 1.21442 0.95478 0.97143 0.98672 0.92633 0.98761 1.02283 0.84657 0.89992 0.94903 0.90784 0.93763 0.90854 0.90851 0.91918 0.94288 0.83821 0.84082 0.92740 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 2 C 0.00 0.07 5.46 84.66 0.46 0.53 16 3 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -31.80 9.32 25.60 0.24 -31.56 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.78 5.24 85.55 0.45 12.22 16 10 N -0.68 -30.55 5.76 -495.57 -2.85 -33.41 16 11 C 0.08 2.84 2.86 44.92 0.13 2.97 16 12 H 0.05 1.96 7.80 -2.39 -0.02 1.94 16 13 C -0.14 -4.50 5.52 30.59 0.17 -4.33 16 14 C -0.12 -3.19 5.67 30.60 0.17 -3.02 16 15 C -0.10 -2.25 4.98 30.60 0.15 -2.09 16 16 C -0.08 -2.10 2.16 -10.80 -0.02 -2.12 16 17 H 0.06 1.89 7.21 -2.39 -0.02 1.88 16 18 C 0.07 1.53 6.24 86.30 0.54 2.07 16 19 N -0.86 -16.25 9.62 -186.73 -1.80 -18.05 16 20 C -0.09 -2.53 4.92 30.60 0.15 -2.38 16 21 H 0.26 15.35 8.31 -92.71 -0.77 14.57 16 22 H -0.01 -0.35 8.06 -2.39 -0.02 -0.37 16 23 H -0.04 -2.42 7.43 -2.39 -0.02 -2.44 16 24 H 0.33 14.53 5.55 -89.69 -0.50 14.03 16 25 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.03 1.22 7.45 -2.39 -0.02 1.20 16 27 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 28 H 0.04 1.41 6.26 -2.39 -0.01 1.40 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.41 6.68 -2.39 -0.02 1.40 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.35 5.08 9.08 -89.69 -0.81 4.27 16 34 H 0.35 5.64 7.25 -89.69 -0.65 4.99 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -66.11 277.75 -0.79 -66.90 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.89 Total: 22.35 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 2.44 Total: -27.70 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -4.36 Total: -109.08 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -66.11 -0.79 -66.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724088048.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.146 kcal (2) G-P(sol) polarization free energy of solvation -66.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds