Wall clock time and date at job start Mon Mar 30 2020 02:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00141 * 2 1 4 4 H 1.48501 * 109.47149 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46985 * 299.99975 * 3 2 1 6 6 H 1.48496 * 109.47125 * 59.99803 * 3 2 1 7 7 C 1.37879 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00077 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99704 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47291 * 180.02562 * 9 7 2 11 11 C 1.46896 * 111.00138 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47271 * 324.99931 * 11 10 9 13 13 C 1.53002 * 109.47058 * 85.00008 * 11 10 9 14 14 C 1.52996 * 109.46891 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47328 * 299.99597 * 14 13 11 16 16 C 1.52997 * 109.47060 * 60.00126 * 15 14 13 17 17 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 18 18 C 1.52992 * 109.47482 * 180.02562 * 16 15 14 19 19 N 1.46898 * 109.47092 * 295.00148 * 18 16 15 20 20 C 1.52997 * 109.46908 * 204.99661 * 11 10 9 21 21 H 0.97000 * 120.00067 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47861 * 59.99886 * 9 7 2 23 23 H 1.09001 * 109.47219 * 299.99688 * 9 7 2 24 24 H 1.00903 * 110.99536 * 303.95365 * 10 9 7 25 25 H 1.08992 * 109.47056 * 59.99674 * 13 11 10 26 26 H 1.09004 * 109.47006 * 299.99790 * 13 11 10 27 27 H 1.09004 * 109.47368 * 179.97438 * 14 13 11 28 28 H 1.09001 * 109.47372 * 59.99964 * 14 13 11 29 29 H 1.09002 * 109.47398 * 180.02562 * 15 14 13 30 30 H 1.09001 * 109.47194 * 300.00476 * 15 14 13 31 31 H 1.09002 * 109.46906 * 55.00224 * 18 16 15 32 32 H 1.09006 * 109.47717 * 174.99599 * 18 16 15 33 33 H 1.00902 * 111.00133 * 56.04865 * 19 18 16 34 34 H 1.00905 * 111.00082 * 179.97438 * 19 18 16 35 35 H 1.09001 * 109.47375 * 300.00206 * 20 11 10 36 36 H 1.09000 * 109.47140 * 60.00224 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6158 0.0018 11 6 1.5053 -4.9070 0.0024 12 1 0.5919 -4.8247 0.5914 13 6 1.1523 -5.2965 -1.4345 14 6 0.4224 -6.6411 -1.4337 15 6 1.3277 -7.7125 -0.8228 16 6 1.6808 -7.3232 0.6141 17 1 0.7674 -7.2403 1.2030 18 6 2.5865 -8.3942 1.2249 19 7 1.8451 -9.6575 1.3356 20 6 2.4112 -5.9781 0.6131 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5572 -0.8896 23 1 0.6241 -2.5567 0.8903 24 1 2.8411 -3.5490 -0.7792 25 1 2.0657 -5.3788 -2.0234 26 1 0.5069 -4.5333 -1.8696 27 1 0.1704 -6.9184 -2.4573 28 1 -0.4911 -6.5583 -0.8448 29 1 0.8078 -8.6706 -0.8226 30 1 2.2412 -7.7953 -1.4116 31 1 3.4586 -8.5394 0.5872 32 1 2.9102 -8.0747 2.2155 33 1 1.4792 -9.9418 0.4393 34 1 2.4224 -10.3817 1.7363 35 1 3.3247 -6.0605 0.0242 36 1 2.6627 -5.7007 1.6368 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724088050.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:36 Heat of formation + Delta-G solvation = -31.904226 kcal Electronic energy + Delta-G solvation = -14362.727377 eV Core-core repulsion = 12073.030980 eV Total energy + Delta-G solvation = -2289.696397 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.91096 -35.50862 -33.59707 -32.16116 -30.43814 -28.77707 -25.71098 -24.57756 -22.01259 -21.60535 -20.20463 -19.55603 -16.44106 -16.05897 -15.16008 -14.93098 -14.51896 -14.19776 -13.66696 -13.65089 -13.09273 -12.90686 -12.40516 -12.09522 -11.74685 -11.43470 -11.25219 -10.85242 -10.79123 -10.74965 -10.66221 -10.29889 -10.12435 -9.89318 -9.66666 -9.10381 -8.79963 -8.46073 -7.19519 -6.00728 -4.02425 3.32374 3.39517 3.44758 4.41876 4.48312 4.84076 4.87084 4.98498 5.32139 5.35166 5.39479 5.51389 5.58994 5.65161 5.76887 5.83489 5.89802 5.92155 6.06850 6.19534 6.32648 6.40660 6.43730 6.52593 6.73369 6.78737 7.02553 7.28908 7.32452 7.48970 7.82757 8.17273 8.45777 8.67666 9.07689 9.62505 11.10393 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.061844 B = 0.005675 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.640807 B = 4932.439914 C = 5151.111436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.686 5.686 11 C 0.089 3.911 12 H 0.069 0.931 13 C -0.148 4.148 14 C -0.114 4.114 15 C -0.112 4.112 16 C -0.087 4.087 17 H 0.077 0.923 18 C 0.066 3.934 19 N -0.853 5.853 20 C -0.098 4.098 21 H 0.260 0.740 22 H -0.013 1.013 23 H 0.026 0.974 24 H 0.327 0.673 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.024 0.976 32 H 0.072 0.928 33 H 0.338 0.662 34 H 0.337 0.663 35 H 0.055 0.945 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.292 -16.171 -1.465 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.315 5.315 11 C -0.022 4.022 12 H 0.087 0.913 13 C -0.187 4.187 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.106 4.106 17 H 0.096 0.904 18 C -0.064 4.064 19 N -0.382 5.382 20 C -0.137 4.137 21 H 0.070 0.930 22 H 0.004 0.996 23 H 0.044 0.956 24 H 0.144 0.856 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.074 0.926 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.747 -15.599 -0.273 15.841 hybrid contribution 0.728 0.566 -1.625 1.869 sum 3.475 -15.033 -1.898 15.546 Atomic orbital electron populations 1.69974 1.06080 1.26614 1.51127 1.24991 0.94859 0.99343 0.95407 0.86445 0.80078 0.83424 0.77481 1.19672 1.21132 1.20998 1.21254 0.93544 0.90350 1.50032 0.91980 1.19571 0.90647 0.87384 0.95664 1.60736 1.20841 1.01168 1.48738 1.21491 0.96493 0.90486 0.93759 0.91263 1.22297 1.00298 0.96816 0.99277 1.21455 0.98596 0.95087 1.00048 1.21579 0.99388 0.98065 0.95938 1.21206 0.99251 0.94301 0.95837 0.90449 1.21850 0.94371 0.89903 1.00323 1.58776 1.42313 1.06090 1.31069 1.21523 0.98089 0.92545 1.01527 0.93010 0.99552 0.95569 0.85604 0.92470 0.91878 0.92670 0.92039 0.92503 0.92586 0.95764 0.90999 0.84864 0.85135 0.92586 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.78 9.32 -34.44 -0.32 -15.10 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.19 5.17 5.24 -4.97 -0.03 5.14 16 10 N -0.69 -14.93 6.24 -107.99 -0.67 -15.60 16 11 C 0.09 1.59 2.47 -67.72 -0.17 1.42 16 12 H 0.07 1.35 7.80 -51.93 -0.40 0.95 16 13 C -0.15 -2.36 5.17 -26.73 -0.14 -2.49 16 14 C -0.11 -1.49 5.92 -26.73 -0.16 -1.65 16 15 C -0.11 -1.29 4.97 -26.73 -0.13 -1.42 16 16 C -0.09 -1.08 2.40 -90.59 -0.22 -1.30 16 17 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 18 C 0.07 0.72 6.24 -3.83 -0.02 0.69 16 19 N -0.85 -8.21 9.62 -10.37 -0.10 -8.31 16 20 C -0.10 -1.46 4.81 -26.70 -0.13 -1.59 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H -0.01 -0.37 7.44 -51.93 -0.39 -0.76 16 23 H 0.03 0.76 8.05 -51.93 -0.42 0.34 16 24 H 0.33 6.85 8.47 -39.29 -0.33 6.52 16 25 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 26 H 0.06 1.14 7.46 -51.93 -0.39 0.75 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.58 6.68 -51.93 -0.35 0.23 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.34 2.92 7.25 -39.29 -0.28 2.63 16 34 H 0.34 2.60 9.08 -39.29 -0.36 2.24 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 283.61 15.07 4.27 4.27 Total: -1.00 -30.08 283.61 -8.46 -38.54 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.27 Total: 5.46 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: -1.41 Total: -14.81 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.04 Total: -50.39 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.08 -8.46 -38.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724088050.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.635 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds