Wall clock time and date at job start Mon Mar 30 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46813 * 2 1 4 4 N 1.46897 * 109.54043 * 59.90228 * 3 2 1 5 5 C 1.53116 * 109.50363 * 299.80005 * 3 2 1 6 6 C 1.53122 * 109.16422 * 182.40852 * 5 3 2 7 7 C 1.53039 * 109.27599 * 57.65218 * 6 5 3 8 8 N 1.46847 * 109.52761 * 300.82488 * 7 6 5 9 9 C 1.46895 * 111.00183 * 185.84232 * 8 7 6 10 10 C 1.50703 * 109.47025 * 300.69095 * 9 8 7 11 11 H 1.08003 * 119.99875 * 354.99509 * 10 9 8 12 12 C 1.37871 * 119.99978 * 174.99375 * 10 9 8 13 13 N 1.31520 * 120.00209 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00081 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47553 * 89.99822 * 14 12 10 16 16 H 1.48509 * 109.46903 * 329.99427 * 14 12 10 17 17 H 1.48506 * 109.47183 * 210.00199 * 14 12 10 18 18 C 1.46847 * 111.19636 * 61.73811 * 8 7 6 19 19 H 1.09004 * 109.47132 * 60.00338 * 1 2 3 20 20 H 1.09005 * 109.47120 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47506 * 300.00311 * 1 2 3 22 22 H 1.08999 * 109.47157 * 240.00078 * 2 1 3 23 23 H 1.08996 * 109.46881 * 119.99451 * 2 1 3 24 24 H 1.00903 * 110.99629 * 300.09517 * 4 3 2 25 25 H 1.00897 * 110.99861 * 64.04694 * 4 3 2 26 26 H 1.09009 * 109.52432 * 302.30980 * 5 3 2 27 27 H 1.08997 * 109.52997 * 62.43846 * 5 3 2 28 28 H 1.08993 * 109.50487 * 177.59346 * 6 5 3 29 29 H 1.09000 * 109.50340 * 297.67548 * 6 5 3 30 30 H 1.09006 * 109.46288 * 180.80985 * 7 6 5 31 31 H 1.09004 * 109.46575 * 60.84262 * 7 6 5 32 32 H 1.09006 * 109.46810 * 180.69603 * 9 8 7 33 33 H 1.08999 * 109.47534 * 60.69740 * 9 8 7 34 34 H 0.97005 * 119.99604 * 359.97438 * 13 12 10 35 35 H 1.09000 * 109.46108 * 58.27656 * 18 8 7 36 36 H 1.09004 * 109.46289 * 178.24292 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5492 2.1371 1.1977 5 6 1.5341 2.1635 -1.2524 6 6 2.0977 3.5870 -1.2752 7 6 3.6265 3.5257 -1.2381 8 7 4.0604 2.8275 -0.0213 9 6 5.5221 2.8708 0.1176 10 6 6.1602 2.2205 -1.0828 11 1 5.5435 1.7442 -1.8306 12 6 7.5314 2.2337 -1.2265 13 7 8.2825 2.8133 -0.3157 14 14 8.3224 1.4284 -2.7148 15 1 8.4470 2.4246 -3.8090 16 1 7.4785 0.2948 -3.1712 17 1 9.6704 0.9252 -2.3475 18 6 3.5703 1.4434 0.0000 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5137 0.8900 24 1 0.5405 2.1498 1.2205 25 1 1.9246 1.7206 2.0365 26 1 1.8657 1.6263 -2.1411 27 1 0.4449 2.2024 -1.2356 28 1 1.7758 4.0915 -2.1861 29 1 1.7339 4.1364 -0.4069 30 1 4.0307 4.5380 -1.2397 31 1 3.9898 2.9884 -2.1142 32 1 5.8172 2.3358 1.0204 33 1 5.8501 3.9080 0.1863 34 1 7.8717 3.2319 0.4570 35 1 3.9338 0.9159 -0.8819 36 1 3.9338 0.9432 0.8977 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885400586.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:02 Heat of formation + Delta-G solvation = -15.876514 kcal Electronic energy + Delta-G solvation = -15142.168645 eV Core-core repulsion = 12853.167263 eV Total energy + Delta-G solvation = -2289.001383 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.13323 -35.52464 -32.94374 -31.34479 -30.49806 -28.11635 -26.20284 -24.12272 -23.12790 -21.83402 -20.03317 -18.50520 -16.72985 -15.54039 -14.98826 -14.56089 -14.16030 -14.05541 -13.89576 -13.62593 -13.01758 -12.53339 -12.08519 -11.91864 -11.68895 -11.46759 -11.20000 -10.93437 -10.85236 -10.67005 -10.35836 -10.25054 -10.13313 -9.84381 -9.47729 -9.07767 -8.34529 -8.17482 -6.92929 -6.33796 -4.08113 3.41404 3.44325 3.59951 4.52935 4.71030 4.94122 5.06786 5.13948 5.25997 5.39043 5.48652 5.51409 5.61767 5.82920 5.97301 6.00114 6.06051 6.14101 6.23590 6.32989 6.41591 6.50240 6.59015 6.61568 6.80402 7.03309 7.16512 7.30912 7.59019 7.84706 8.00144 8.20230 8.35410 8.59061 8.84012 9.65627 11.02253 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040629 B = 0.008465 C = 0.008143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.997716 B = 3306.946385 C = 3437.603409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.155 4.155 3 C 0.122 3.878 4 N -0.817 5.817 5 C -0.102 4.102 6 C -0.109 4.109 7 C 0.069 3.931 8 N -0.517 5.517 9 C 0.174 3.826 10 C -0.627 4.627 11 H 0.050 0.950 12 C 0.020 3.980 13 N -0.911 5.911 14 Si 1.067 2.933 15 H -0.288 1.288 16 H -0.291 1.291 17 H -0.284 1.284 18 C 0.081 3.919 19 H 0.058 0.942 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.326 0.674 25 H 0.336 0.664 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.032 0.968 32 H 0.016 0.984 33 H 0.022 0.978 34 H 0.270 0.730 35 H 0.037 0.963 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.313 -3.658 -0.320 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.195 4.195 3 C 0.029 3.971 4 N -0.346 5.346 5 C -0.140 4.140 6 C -0.147 4.147 7 C -0.060 4.060 8 N -0.240 5.240 9 C 0.048 3.952 10 C -0.666 4.666 11 H 0.068 0.932 12 C -0.184 4.184 13 N -0.547 5.547 14 Si 0.896 3.104 15 H -0.215 1.215 16 H -0.217 1.217 17 H -0.209 1.209 18 C -0.048 4.048 19 H 0.077 0.923 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.139 0.861 25 H 0.149 0.851 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.667 -3.066 -0.923 13.065 hybrid contribution -1.454 -1.167 0.212 1.877 sum -14.121 -4.233 -0.711 14.759 Atomic orbital electron populations 1.21815 0.96145 1.01259 1.01716 1.22324 0.95857 0.98971 1.02322 1.20898 0.95592 0.89474 0.91127 1.58714 1.11776 1.60438 1.03694 1.21574 0.99095 0.97005 0.96362 1.21518 0.96432 0.95937 1.00826 1.21793 0.93162 0.98588 0.92441 1.62242 1.13167 1.12848 1.35776 1.19835 0.82764 0.96517 0.96106 1.22605 0.94624 1.40300 1.09097 0.93212 1.25748 0.94338 0.96175 1.02183 1.70755 1.38699 1.34095 1.11123 0.83578 0.75842 0.76034 0.74996 1.21463 1.21682 1.20946 1.21806 0.90994 0.91688 1.00311 0.92348 0.93079 0.93003 0.91694 0.92220 0.86117 0.85122 0.92551 0.92734 0.93362 0.90665 0.92253 0.94959 0.96610 0.96017 0.91951 0.94456 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.23 37.16 0.34 -1.24 16 2 C -0.15 -2.00 5.17 -26.73 -0.14 -2.14 16 3 C 0.12 1.87 0.60 -131.52 -0.08 1.79 16 4 N -0.82 -11.57 8.04 0.81 0.01 -11.57 16 5 C -0.10 -1.54 4.53 -26.61 -0.12 -1.66 16 6 C -0.11 -1.83 5.93 -26.65 -0.16 -1.98 16 7 C 0.07 1.44 5.03 -3.83 -0.02 1.42 16 8 N -0.52 -11.54 4.71 -236.10 -1.11 -12.65 16 9 C 0.17 4.61 4.48 -4.98 -0.02 4.59 16 10 C -0.63 -17.77 7.72 -34.44 -0.27 -18.03 16 11 H 0.05 1.42 5.86 -52.48 -0.31 1.11 16 12 C 0.02 0.59 5.46 -17.82 -0.10 0.50 16 13 N -0.91 -27.99 13.65 55.43 0.76 -27.23 16 14 Si 1.07 25.64 29.90 -169.99 -5.08 20.55 16 15 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.08 1.62 3.99 -3.83 -0.02 1.61 16 19 H 0.06 0.60 6.49 -51.93 -0.34 0.27 16 20 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.50 6.67 -51.93 -0.35 0.15 16 22 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.33 3.89 7.17 -39.29 -0.28 3.61 16 25 H 0.34 4.62 8.99 -39.29 -0.35 4.27 16 26 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 27 H 0.05 0.71 6.58 -51.93 -0.34 0.37 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.29 7.73 -51.93 -0.40 0.89 16 30 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 31 H 0.03 0.73 6.73 -51.93 -0.35 0.38 16 32 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.02 0.61 7.81 -51.93 -0.41 0.21 16 34 H 0.27 8.29 7.19 -40.82 -0.29 8.00 16 35 H 0.04 0.82 6.86 -51.93 -0.36 0.47 16 36 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 LS Contribution 272.80 15.07 4.11 4.11 Total: -1.00 -30.10 272.80 -7.84 -37.94 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.94 Total: 4.01 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -0.57 Total: -15.17 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.35 Total: -51.45 kcal Atomic # 14 Polarization: 25.64 SS G_CDS: -5.08 Total: 20.55 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.10 -7.84 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400586.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.063 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds