Wall clock time and date at job start Mon Mar 30 2020 02:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.46715 * 2 1 4 4 C 1.52997 * 109.46975 * 240.00067 * 2 1 3 5 5 C 1.53006 * 109.47164 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46626 * 59.99702 * 5 4 2 7 7 N 1.46906 * 109.46904 * 179.97438 * 6 5 4 8 8 C 1.46898 * 111.00158 * 205.00112 * 7 6 5 9 9 C 1.50699 * 109.47102 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00192 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00266 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99889 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00538 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47115 * 59.99877 * 13 11 9 15 15 H 1.48492 * 109.47681 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46940 * 300.00589 * 13 11 9 17 17 C 1.52997 * 109.47592 * 300.00035 * 6 5 4 18 18 C 1.52996 * 109.47165 * 60.00300 * 17 6 5 19 19 H 1.09004 * 109.47368 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47108 * 300.00049 * 1 2 3 21 21 H 1.09001 * 109.47367 * 59.99747 * 1 2 3 22 22 H 1.00892 * 111.00581 * 60.00270 * 3 2 1 23 23 H 1.00909 * 110.99269 * 183.95692 * 3 2 1 24 24 H 1.09001 * 109.46922 * 59.99912 * 4 2 1 25 25 H 1.09000 * 109.47140 * 299.99612 * 4 2 1 26 26 H 1.08993 * 109.46955 * 180.02562 * 5 4 2 27 27 H 1.09000 * 109.47050 * 300.00004 * 5 4 2 28 28 H 1.09000 * 109.47160 * 60.00369 * 6 5 4 29 29 H 1.00901 * 111.00210 * 328.96157 * 7 6 5 30 30 H 1.08995 * 109.47229 * 300.00220 * 8 7 6 31 31 H 1.08994 * 109.47007 * 60.00253 * 8 7 6 32 32 H 0.97000 * 119.99849 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.47140 * 300.00346 * 17 6 5 34 34 H 1.09001 * 109.47375 * 180.02562 * 17 6 5 35 35 H 1.08992 * 109.47534 * 180.02562 * 18 17 6 36 36 H 1.08996 * 109.47134 * 59.99508 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0804 -1.4415 -0.0003 7 7 5.5495 -1.4416 -0.0009 8 6 6.0762 -2.5648 0.7858 9 6 7.5826 -2.5315 0.7626 10 1 8.0973 -1.7535 0.2182 11 6 8.3039 -3.4935 1.4372 12 7 7.6773 -4.4406 2.1005 13 14 10.1713 -3.4520 1.4091 14 1 10.6467 -2.1720 1.9930 15 1 10.7038 -4.5873 2.2043 16 1 10.6478 -3.5636 0.0070 17 6 3.5704 -0.7203 1.2489 18 6 2.0405 -0.7209 1.2493 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.6961 1.8830 0.8157 23 1 3.0262 1.4127 -0.0650 24 1 1.6765 -0.2074 -2.1392 25 1 1.6766 -1.7489 -1.2492 26 1 3.9332 -1.2341 -2.1398 27 1 3.9329 0.3071 -1.2498 28 1 3.7174 -2.4693 -0.0001 29 1 5.9107 -1.4590 -0.9429 30 1 5.7271 -2.4827 1.8151 31 1 5.7266 -3.5040 0.3574 32 1 8.1847 -5.1177 2.5748 33 1 3.9334 0.3075 1.2487 34 1 3.9345 -1.2336 2.1389 35 1 1.6771 -0.2067 2.1390 36 1 1.6775 -1.7486 1.2494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885400819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:51 Heat of formation + Delta-G solvation = -25.456772 kcal Electronic energy + Delta-G solvation = -14622.844862 eV Core-core repulsion = 12333.428048 eV Total energy + Delta-G solvation = -2289.416814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.42791 -35.44567 -32.83202 -30.94626 -30.57727 -29.38062 -26.81385 -24.53837 -22.70404 -21.51037 -20.24334 -18.69673 -16.45825 -15.99667 -14.99293 -14.77746 -14.66029 -14.11468 -13.83072 -13.47702 -12.67683 -12.48617 -12.20162 -12.07611 -11.99692 -11.69739 -11.34352 -11.11894 -10.90390 -10.81150 -10.77312 -10.41332 -10.12906 -9.90963 -9.64637 -9.14001 -8.56572 -8.47283 -7.27916 -6.02755 -4.04810 3.33654 3.37376 3.40608 4.42830 4.57325 4.80824 4.83219 5.05412 5.27111 5.33015 5.35019 5.51605 5.62701 5.70453 5.75790 5.77971 5.87997 5.95951 6.06312 6.17179 6.21388 6.34553 6.39694 6.50382 6.66974 6.74317 7.27897 7.29951 7.43439 7.55795 7.79884 8.14831 8.42749 8.63754 9.04700 9.60165 11.08333 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.068064 B = 0.005972 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.279310 B = 4687.256901 C = 4783.769386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.116 3.884 3 N -0.841 5.841 4 C -0.102 4.102 5 C -0.122 4.122 6 C 0.086 3.914 7 N -0.688 5.688 8 C 0.195 3.805 9 C -0.515 4.515 10 H 0.061 0.939 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.900 3.100 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.106 4.106 18 C -0.147 4.147 19 H 0.056 0.944 20 H 0.050 0.950 21 H 0.060 0.940 22 H 0.334 0.666 23 H 0.346 0.654 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.033 0.967 29 H 0.329 0.671 30 H 0.027 0.973 31 H -0.016 1.016 32 H 0.262 0.738 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.257 7.531 -3.946 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.023 3.977 3 N -0.373 5.373 4 C -0.140 4.140 5 C -0.160 4.160 6 C -0.024 4.024 7 N -0.318 5.318 8 C 0.069 3.931 9 C -0.553 4.553 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.727 3.273 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.144 4.144 18 C -0.187 4.187 19 H 0.075 0.925 20 H 0.069 0.931 21 H 0.079 0.921 22 H 0.146 0.854 23 H 0.162 0.838 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.146 0.854 30 H 0.045 0.955 31 H 0.002 0.998 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.574 7.890 -3.991 15.371 hybrid contribution 1.355 -1.209 0.497 1.882 sum -11.219 6.682 -3.493 13.517 Atomic orbital electron populations 1.21802 0.94416 1.01429 1.01848 1.20761 0.94281 0.88231 0.94395 1.59063 1.17257 1.13676 1.47273 1.21525 0.95720 0.99681 0.97091 1.21740 0.95020 1.01432 0.97766 1.21447 0.90329 0.96899 0.93760 1.60676 1.03797 1.49406 1.17934 1.19567 0.94792 0.85635 0.93152 1.21171 0.91193 1.11258 1.31713 0.92044 1.24994 0.98860 0.95346 0.95380 1.69959 1.35671 1.14950 1.33261 0.86541 0.85211 0.77487 0.78032 1.20163 1.21346 1.20265 1.21498 0.93027 1.00952 0.98928 1.22352 0.97043 1.01336 0.97957 0.92459 0.93055 0.92132 0.85357 0.83788 0.91557 0.91948 0.92268 0.91130 0.94930 0.85437 0.95512 0.99784 0.92883 0.92072 0.91694 0.92434 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.77 37.16 0.33 -1.09 16 2 C 0.12 1.38 0.94 -131.60 -0.12 1.25 16 3 N -0.84 -9.72 8.74 0.74 0.01 -9.71 16 4 C -0.10 -1.28 4.92 -26.73 -0.13 -1.41 16 5 C -0.12 -1.75 4.93 -26.73 -0.13 -1.88 16 6 C 0.09 1.53 2.49 -67.71 -0.17 1.36 16 7 N -0.69 -14.81 6.30 -108.00 -0.68 -15.49 16 8 C 0.20 5.19 5.24 -4.98 -0.03 5.16 16 9 C -0.51 -14.77 9.32 -34.44 -0.32 -15.09 16 10 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 13 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 C -0.11 -1.73 5.17 -26.73 -0.14 -1.87 16 18 C -0.15 -1.94 4.89 -26.73 -0.13 -2.07 16 19 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 20 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.33 3.44 9.00 -39.30 -0.35 3.08 16 23 H 0.35 4.29 5.44 -39.29 -0.21 4.07 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 27 H 0.07 1.01 6.57 -51.93 -0.34 0.67 16 28 H 0.03 0.63 7.80 -51.93 -0.40 0.23 16 29 H 0.33 6.81 8.34 -39.29 -0.33 6.48 16 30 H 0.03 0.77 7.44 -51.93 -0.39 0.38 16 31 H -0.02 -0.44 8.05 -51.93 -0.42 -0.86 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 0.98 6.76 -51.93 -0.35 0.63 16 34 H 0.06 1.22 7.45 -51.93 -0.39 0.83 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 279.39 15.07 4.21 4.21 Total: -1.00 -29.60 279.39 -7.80 -37.40 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.11 Total: 7.28 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.94 Total: -14.13 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.06 Total: -51.63 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.60 -7.80 -37.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.944 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds