Wall clock time and date at job start Mon Mar 30 2020 02:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46906 * 109.46715 * 2 1 4 4 C 1.52997 * 109.46975 * 240.00067 * 2 1 3 5 5 C 1.53006 * 109.47164 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46626 * 59.99702 * 5 4 2 7 7 N 1.46906 * 109.46904 * 179.97438 * 6 5 4 8 8 C 1.46898 * 111.00158 * 205.00112 * 7 6 5 9 9 C 1.50699 * 109.47102 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00192 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00266 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99889 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00538 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47115 * 59.99877 * 13 11 9 15 15 H 1.48492 * 109.47681 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46940 * 300.00589 * 13 11 9 17 17 C 1.52997 * 109.47592 * 300.00035 * 6 5 4 18 18 C 1.52996 * 109.47165 * 60.00300 * 17 6 5 19 19 H 1.09004 * 109.47368 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.47108 * 300.00049 * 1 2 3 21 21 H 1.09001 * 109.47367 * 59.99747 * 1 2 3 22 22 H 1.00892 * 111.00581 * 60.00270 * 3 2 1 23 23 H 1.00909 * 110.99269 * 183.95692 * 3 2 1 24 24 H 1.09001 * 109.46922 * 59.99912 * 4 2 1 25 25 H 1.09000 * 109.47140 * 299.99612 * 4 2 1 26 26 H 1.08993 * 109.46955 * 180.02562 * 5 4 2 27 27 H 1.09000 * 109.47050 * 300.00004 * 5 4 2 28 28 H 1.09000 * 109.47160 * 60.00369 * 6 5 4 29 29 H 1.00901 * 111.00210 * 328.96157 * 7 6 5 30 30 H 1.08995 * 109.47229 * 300.00220 * 8 7 6 31 31 H 1.08994 * 109.47007 * 60.00253 * 8 7 6 32 32 H 0.97000 * 119.99849 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.47140 * 300.00346 * 17 6 5 34 34 H 1.09001 * 109.47375 * 180.02562 * 17 6 5 35 35 H 1.08992 * 109.47534 * 180.02562 * 18 17 6 36 36 H 1.08996 * 109.47134 * 59.99508 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0804 -1.4415 -0.0003 7 7 5.5495 -1.4416 -0.0009 8 6 6.0762 -2.5648 0.7858 9 6 7.5826 -2.5315 0.7626 10 1 8.0973 -1.7535 0.2182 11 6 8.3039 -3.4935 1.4372 12 7 7.6773 -4.4406 2.1005 13 14 10.1713 -3.4520 1.4091 14 1 10.6467 -2.1720 1.9930 15 1 10.7038 -4.5873 2.2043 16 1 10.6478 -3.5636 0.0070 17 6 3.5704 -0.7203 1.2489 18 6 2.0405 -0.7209 1.2493 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.6961 1.8830 0.8157 23 1 3.0262 1.4127 -0.0650 24 1 1.6765 -0.2074 -2.1392 25 1 1.6766 -1.7489 -1.2492 26 1 3.9332 -1.2341 -2.1398 27 1 3.9329 0.3071 -1.2498 28 1 3.7174 -2.4693 -0.0001 29 1 5.9107 -1.4590 -0.9429 30 1 5.7271 -2.4827 1.8151 31 1 5.7266 -3.5040 0.3574 32 1 8.1847 -5.1177 2.5748 33 1 3.9334 0.3075 1.2487 34 1 3.9345 -1.2336 2.1389 35 1 1.6771 -0.2067 2.1390 36 1 1.6775 -1.7486 1.2494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885400819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:50 Heat of formation + Delta-G solvation = -46.978627 kcal Electronic energy + Delta-G solvation = -14623.778120 eV Core-core repulsion = 12333.428048 eV Total energy + Delta-G solvation = -2290.350072 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.60128 -37.04991 -34.82892 -32.49888 -31.79160 -30.33522 -28.62049 -26.01663 -24.14037 -23.22706 -21.64603 -19.81610 -18.56908 -17.04145 -16.71159 -16.39685 -16.05125 -15.43751 -15.19100 -14.83526 -14.27855 -13.94977 -13.78320 -13.42298 -13.12362 -13.05341 -12.77169 -12.61570 -12.55356 -12.30839 -12.09401 -12.05076 -11.58045 -11.45831 -11.06378 -11.01476 -10.67374 -9.52714 -9.14050 -8.24683 -6.36670 1.39745 1.43646 1.51773 2.38465 3.08385 3.42568 3.61758 3.76450 3.87963 4.09525 4.18976 4.30943 4.46291 4.48451 4.55488 4.72190 4.88467 4.94816 4.96104 5.01356 5.06077 5.12686 5.21278 5.23747 5.28941 5.36742 5.42326 5.48321 5.61924 6.01298 6.34924 6.45184 6.66305 6.71736 6.88033 7.34803 8.86893 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.068064 B = 0.005972 C = 0.005852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.279310 B = 4687.256901 C = 4783.769386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.120 3.880 3 N -0.839 5.839 4 C -0.099 4.099 5 C -0.112 4.112 6 C 0.084 3.916 7 N -0.684 5.684 8 C 0.212 3.788 9 C -0.538 4.538 10 H 0.065 0.935 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.976 3.024 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.265 1.265 17 C -0.101 4.101 18 C -0.140 4.140 19 H 0.062 0.938 20 H 0.060 0.940 21 H 0.065 0.935 22 H 0.343 0.657 23 H 0.341 0.659 24 H 0.080 0.920 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.012 0.988 29 H 0.334 0.666 30 H -0.003 1.003 31 H -0.046 1.046 32 H 0.265 0.735 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.071 0.929 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.457 8.771 -4.726 15.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.027 3.973 3 N -0.371 5.371 4 C -0.137 4.137 5 C -0.150 4.150 6 C -0.026 4.026 7 N -0.315 5.315 8 C 0.084 3.916 9 C -0.576 4.576 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.576 5.576 13 Si 0.799 3.201 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.190 1.190 17 C -0.139 4.139 18 C -0.180 4.180 19 H 0.081 0.919 20 H 0.079 0.921 21 H 0.084 0.916 22 H 0.156 0.844 23 H 0.156 0.844 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.030 0.970 29 H 0.152 0.848 30 H 0.015 0.985 31 H -0.028 1.028 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.798 9.153 -4.782 16.445 hybrid contribution 1.372 -1.591 0.751 2.231 sum -11.426 7.562 -4.031 14.282 Atomic orbital electron populations 1.21763 0.92667 1.02079 1.02584 1.20752 0.95524 0.88081 0.92975 1.59077 1.16855 1.13311 1.47825 1.21529 0.93882 1.00188 0.98134 1.21650 0.96606 1.01048 0.95651 1.21578 0.87886 0.96589 0.96533 1.60586 1.06369 1.46720 1.17801 1.19178 0.94400 0.85929 0.92048 1.21544 0.92228 1.11695 1.32156 0.91638 1.25996 1.04547 0.94658 0.94582 1.70098 1.37932 1.15675 1.33891 0.85346 0.78260 0.77819 0.78632 1.19256 1.20743 1.18979 1.21432 0.95561 1.00368 0.96565 1.22324 0.94270 1.01653 0.99722 0.91917 0.92127 0.91616 0.84355 0.84365 0.90119 0.91840 0.92012 0.90542 0.97028 0.84818 0.98506 1.02799 0.92597 0.91514 0.95151 0.91015 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.77 71.98 0.63 -1.73 16 2 C 0.12 2.57 0.94 3.52 0.00 2.58 16 3 N -0.84 -17.35 8.74 -151.56 -1.32 -18.68 16 4 C -0.10 -2.28 4.92 30.60 0.15 -2.13 16 5 C -0.11 -3.09 4.93 30.60 0.15 -2.94 16 6 C 0.08 3.03 2.49 44.91 0.11 3.15 16 7 N -0.68 -30.16 6.30 -495.59 -3.12 -33.28 16 8 C 0.21 11.78 5.24 85.56 0.45 12.23 16 9 C -0.54 -31.40 9.32 25.60 0.24 -31.17 16 10 H 0.07 3.69 7.81 -2.91 -0.02 3.66 16 11 C 0.00 0.01 5.46 84.65 0.46 0.48 16 12 N -0.94 -57.71 13.29 21.45 0.28 -57.42 16 13 Si 0.98 44.80 29.54 68.60 2.03 46.82 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 17 C -0.10 -3.34 5.17 30.59 0.16 -3.18 16 18 C -0.14 -3.55 4.89 30.59 0.15 -3.40 16 19 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 20 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 21 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.34 6.17 9.00 -89.70 -0.81 5.36 16 23 H 0.34 7.75 5.44 -89.69 -0.49 7.26 16 24 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.68 8.12 -2.39 -0.02 1.66 16 27 H 0.08 2.06 6.57 -2.39 -0.02 2.04 16 28 H 0.01 0.47 7.80 -2.39 -0.02 0.45 16 29 H 0.33 13.98 8.34 -89.69 -0.75 13.23 16 30 H 0.00 -0.19 7.44 -2.39 -0.02 -0.21 16 31 H -0.05 -2.75 8.05 -2.39 -0.02 -2.76 16 32 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 33 H 0.07 2.11 6.76 -2.39 -0.02 2.10 16 34 H 0.03 1.19 7.45 -2.39 -0.02 1.17 16 35 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -64.16 279.39 -0.61 -64.76 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -0.98 Total: 23.91 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 2.50 Total: -26.12 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.16 Total: -109.38 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.16 -0.61 -64.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.786 kcal (2) G-P(sol) polarization free energy of solvation -64.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds