Wall clock time and date at job start Mon Mar 30 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99886 * 2 1 4 4 H 1.48499 * 109.47036 * 269.99547 * 3 2 1 5 5 H 1.48498 * 109.47280 * 29.99748 * 3 2 1 6 6 H 1.48500 * 109.47289 * 149.99669 * 3 2 1 7 7 C 1.37881 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99643 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46885 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46847 * 185.07768 * 10 9 7 12 12 C 1.48200 * 110.82848 * 155.69455 * 11 10 9 13 13 C 1.50446 * 112.72099 * 85.10839 * 12 11 10 14 14 C 1.54310 * 108.66391 * 93.49800 * 13 12 11 15 15 C 1.45883 * 112.18173 * 281.38229 * 14 13 12 16 16 H 1.09005 * 108.93534 * 300.41880 * 15 14 13 17 17 N 1.46898 * 108.93898 * 181.82105 * 15 14 13 18 18 C 1.54303 * 112.19252 * 61.11564 * 15 14 13 19 19 C 1.48000 * 110.99834 * 284.46240 * 11 10 9 20 20 H 0.97005 * 120.00203 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47133 * 59.99500 * 9 7 2 22 22 H 1.09003 * 109.47039 * 299.99851 * 9 7 2 23 23 H 1.09000 * 109.46916 * 65.07582 * 10 9 7 24 24 H 1.08996 * 109.46861 * 305.07599 * 10 9 7 25 25 H 1.09005 * 109.13034 * 324.09272 * 12 11 10 26 26 H 1.09006 * 108.60939 * 205.76628 * 12 11 10 27 27 H 1.08994 * 109.62928 * 333.69438 * 13 12 11 28 28 H 1.08996 * 109.63142 * 213.30031 * 13 12 11 29 29 H 1.08996 * 108.94276 * 42.07603 * 14 13 12 30 30 H 1.09003 * 108.93797 * 160.77705 * 14 13 12 31 31 H 1.00900 * 111.00252 * 60.00133 * 17 15 14 32 32 H 1.00898 * 110.99823 * 183.95052 * 17 15 14 33 33 H 1.09004 * 109.63176 * 41.15971 * 18 15 14 34 34 H 1.09007 * 109.63216 * 161.75103 * 18 15 14 35 35 H 1.08999 * 108.81789 * 70.48686 * 19 11 10 36 36 H 1.09005 * 108.72874 * 312.14625 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5150 -4.9307 -0.1220 12 6 2.3833 -5.9853 -0.6967 13 6 3.2206 -6.6790 0.3431 14 6 2.4705 -7.9403 0.8202 15 6 1.4120 -7.6242 1.7730 16 1 1.8519 -7.1301 2.6393 17 7 0.7765 -8.8739 2.2116 18 6 0.3355 -6.7019 1.1636 19 6 0.8628 -5.2929 1.1562 20 1 -0.4851 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 2.8106 -3.6568 0.9325 24 1 2.9303 -3.5544 -0.8405 25 1 3.0443 -5.5384 -1.4394 26 1 1.7524 -6.7245 -1.1905 27 1 3.3850 -6.0094 1.1872 28 1 4.1792 -6.9648 -0.0898 29 1 2.0313 -8.4388 -0.0439 30 1 3.1816 -8.6165 1.2947 31 1 1.4464 -9.4838 2.6558 32 1 -0.0038 -8.6873 2.8234 33 1 0.1184 -7.0170 0.1429 34 1 -0.5718 -6.7503 1.7657 35 1 0.0349 -4.6068 1.3352 36 1 1.5885 -5.1850 1.9623 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885400862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:38 Heat of formation + Delta-G solvation = -9.915295 kcal Electronic energy + Delta-G solvation = -14598.485332 eV Core-core repulsion = 12309.742447 eV Total energy + Delta-G solvation = -2288.742885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.29227 -35.66560 -33.18239 -32.20755 -30.71426 -28.93552 -25.91296 -24.02750 -23.70159 -20.96006 -20.06787 -19.08180 -16.47127 -15.93080 -15.62781 -15.54414 -14.57388 -14.06736 -13.86410 -13.42850 -13.10644 -12.88944 -12.24160 -12.11044 -11.76203 -11.42450 -11.08605 -10.94233 -10.85288 -10.75012 -10.55616 -10.44868 -10.22930 -9.72092 -9.32283 -9.05912 -8.79303 -8.29244 -7.50979 -5.95620 -3.97886 3.34121 3.40094 3.43144 4.30331 4.37996 4.54588 4.81080 4.95241 5.12771 5.35012 5.40175 5.45965 5.55127 5.66444 5.83694 5.93802 5.95694 6.09244 6.11869 6.22833 6.33216 6.38778 6.43522 6.54510 6.62669 7.04649 7.07249 7.31545 7.59420 7.67619 7.86464 7.99522 8.15776 8.48782 9.09972 9.65464 11.15780 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059991 B = 0.006097 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.620963 B = 4591.357365 C = 4827.472951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.067 3.933 11 N -0.548 5.548 12 C 0.057 3.943 13 C -0.146 4.146 14 C -0.110 4.110 15 C 0.092 3.908 16 H 0.028 0.972 17 N -0.850 5.850 18 C -0.110 4.110 19 C 0.066 3.934 20 H 0.260 0.740 21 H 0.025 0.975 22 H 0.013 0.987 23 H 0.017 0.983 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.336 0.664 32 H 0.340 0.660 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -14.984 3.353 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.060 4.060 11 N -0.273 5.273 12 C -0.071 4.071 13 C -0.186 4.186 14 C -0.148 4.148 15 C -0.019 4.019 16 H 0.046 0.954 17 N -0.380 5.380 18 C -0.149 4.149 19 C -0.062 4.062 20 H 0.069 0.931 21 H 0.043 0.957 22 H 0.032 0.968 23 H 0.036 0.964 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 2.914 -14.923 2.273 15.374 hybrid contribution 1.419 1.136 1.633 2.443 sum 4.333 -13.788 3.905 14.971 Atomic orbital electron populations 1.69976 1.06016 1.26482 1.50801 1.24989 0.94808 0.99108 0.95393 0.86616 0.79796 0.83602 0.78096 1.20647 1.21255 1.19986 1.21222 0.92933 0.91191 1.50682 0.92904 1.19063 0.94019 0.90029 0.97696 1.22375 0.96584 0.88637 0.98409 1.62019 1.33843 1.03484 1.27921 1.21972 0.94421 0.94401 0.96258 1.21894 0.99092 0.97129 1.00517 1.20530 0.96730 0.97605 0.99895 1.20424 0.94804 0.89852 0.96789 0.95438 1.58868 1.13727 1.16545 1.48859 1.21453 0.97042 0.94007 1.02355 1.21698 0.98697 0.95646 0.90146 0.93051 0.95681 0.96832 0.96436 0.92329 0.91576 0.91568 0.91862 0.91616 0.91064 0.92995 0.85222 0.84755 0.90173 0.91444 0.90402 0.95619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.29 55.43 0.74 -26.54 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.78 5.00 -27.88 -0.14 0.65 16 10 C 0.07 1.44 4.89 -3.82 -0.02 1.42 16 11 N -0.55 -10.15 4.61 -235.72 -1.09 -11.24 16 12 C 0.06 0.87 5.17 -4.38 -0.02 0.85 16 13 C -0.15 -1.91 5.58 -27.32 -0.15 -2.06 16 14 C -0.11 -1.29 4.76 -29.41 -0.14 -1.43 16 15 C 0.09 1.10 2.76 -70.40 -0.19 0.91 16 16 H 0.03 0.35 7.52 -51.93 -0.39 -0.04 16 17 N -0.85 -8.63 9.19 -6.98 -0.06 -8.69 16 18 C -0.11 -1.52 5.21 -27.33 -0.14 -1.66 16 19 C 0.07 1.11 4.70 -4.49 -0.02 1.09 16 20 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 21 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.01 0.38 7.35 -51.93 -0.38 0.00 16 23 H 0.02 0.38 7.78 -51.93 -0.40 -0.03 16 24 H 0.06 1.25 7.45 -51.93 -0.39 0.86 16 25 H 0.07 1.00 7.45 -51.93 -0.39 0.61 16 26 H 0.07 0.95 6.61 -51.93 -0.34 0.61 16 27 H 0.06 0.92 7.00 -51.93 -0.36 0.55 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 30 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 31 H 0.34 2.86 8.99 -39.29 -0.35 2.50 16 32 H 0.34 3.06 8.80 -39.29 -0.35 2.71 16 33 H 0.08 1.18 7.09 -51.93 -0.37 0.81 16 34 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 35 H 0.08 1.46 7.39 -51.93 -0.38 1.07 16 36 H 0.03 0.44 6.24 -51.93 -0.32 0.11 16 LS Contribution 276.15 15.07 4.16 4.16 Total: -1.00 -30.37 276.15 -8.56 -38.92 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.04 Total: 0.50 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -1.24 Total: -13.97 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.42 Total: -46.48 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.37 -8.56 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.008 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds