Wall clock time and date at job start Mon Mar 30 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99886 * 2 1 4 4 H 1.48499 * 109.47036 * 269.99547 * 3 2 1 5 5 H 1.48498 * 109.47280 * 29.99748 * 3 2 1 6 6 H 1.48500 * 109.47289 * 149.99669 * 3 2 1 7 7 C 1.37881 * 120.00294 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99643 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46885 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46847 * 185.07768 * 10 9 7 12 12 C 1.48200 * 110.82848 * 155.69455 * 11 10 9 13 13 C 1.50446 * 112.72099 * 85.10839 * 12 11 10 14 14 C 1.54310 * 108.66391 * 93.49800 * 13 12 11 15 15 C 1.45883 * 112.18173 * 281.38229 * 14 13 12 16 16 H 1.09005 * 108.93534 * 300.41880 * 15 14 13 17 17 N 1.46898 * 108.93898 * 181.82105 * 15 14 13 18 18 C 1.54303 * 112.19252 * 61.11564 * 15 14 13 19 19 C 1.48000 * 110.99834 * 284.46240 * 11 10 9 20 20 H 0.97005 * 120.00203 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47133 * 59.99500 * 9 7 2 22 22 H 1.09003 * 109.47039 * 299.99851 * 9 7 2 23 23 H 1.09000 * 109.46916 * 65.07582 * 10 9 7 24 24 H 1.08996 * 109.46861 * 305.07599 * 10 9 7 25 25 H 1.09005 * 109.13034 * 324.09272 * 12 11 10 26 26 H 1.09006 * 108.60939 * 205.76628 * 12 11 10 27 27 H 1.08994 * 109.62928 * 333.69438 * 13 12 11 28 28 H 1.08996 * 109.63142 * 213.30031 * 13 12 11 29 29 H 1.08996 * 108.94276 * 42.07603 * 14 13 12 30 30 H 1.09003 * 108.93797 * 160.77705 * 14 13 12 31 31 H 1.00900 * 111.00252 * 60.00133 * 17 15 14 32 32 H 1.00898 * 110.99823 * 183.95052 * 17 15 14 33 33 H 1.09004 * 109.63176 * 41.15971 * 18 15 14 34 34 H 1.09007 * 109.63216 * 161.75103 * 18 15 14 35 35 H 1.08999 * 108.81789 * 70.48686 * 19 11 10 36 36 H 1.09005 * 108.72874 * 312.14625 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5150 -4.9307 -0.1220 12 6 2.3833 -5.9853 -0.6967 13 6 3.2206 -6.6790 0.3431 14 6 2.4705 -7.9403 0.8202 15 6 1.4120 -7.6242 1.7730 16 1 1.8519 -7.1301 2.6393 17 7 0.7765 -8.8739 2.2116 18 6 0.3355 -6.7019 1.1636 19 6 0.8628 -5.2929 1.1562 20 1 -0.4851 0.8401 -0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6241 -2.5567 0.8903 23 1 2.8106 -3.6568 0.9325 24 1 2.9303 -3.5544 -0.8405 25 1 3.0443 -5.5384 -1.4394 26 1 1.7524 -6.7245 -1.1905 27 1 3.3850 -6.0094 1.1872 28 1 4.1792 -6.9648 -0.0898 29 1 2.0313 -8.4388 -0.0439 30 1 3.1816 -8.6165 1.2947 31 1 1.4464 -9.4838 2.6558 32 1 -0.0038 -8.6873 2.8234 33 1 0.1184 -7.0170 0.1429 34 1 -0.5718 -6.7503 1.7657 35 1 0.0349 -4.6068 1.3352 36 1 1.5885 -5.1850 1.9623 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885400862.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:37 Heat of formation + Delta-G solvation = -32.142271 kcal Electronic energy + Delta-G solvation = -14599.449166 eV Core-core repulsion = 12309.742447 eV Total energy + Delta-G solvation = -2289.706719 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.48696 -37.01769 -35.13673 -33.50245 -32.21541 -30.47117 -27.43131 -25.54071 -25.15050 -22.71806 -21.14645 -20.47192 -18.57804 -17.11217 -16.93762 -16.54335 -16.44510 -15.44901 -15.21284 -15.05719 -14.32335 -14.09668 -13.97912 -13.50279 -13.31738 -13.20404 -12.77180 -12.54238 -12.25767 -12.14171 -11.99490 -11.75503 -11.59402 -11.38544 -11.25033 -11.08644 -10.53788 -9.62651 -8.99846 -8.19290 -6.31132 1.40044 1.42088 1.52879 2.40557 3.02763 3.13831 3.41699 3.75416 3.89139 4.07464 4.22525 4.31265 4.42016 4.45636 4.54805 4.67163 4.73616 4.84846 4.91268 5.03727 5.05878 5.11239 5.15652 5.24412 5.32953 5.41029 5.47619 5.67688 5.80669 6.14582 6.22148 6.37009 6.42696 6.61935 6.86664 7.38109 8.93019 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.059991 B = 0.006097 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.620963 B = 4591.357365 C = 4827.472951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.038 3.962 10 C 0.085 3.915 11 N -0.564 5.564 12 C 0.058 3.942 13 C -0.140 4.140 14 C -0.106 4.106 15 C 0.098 3.902 16 H 0.022 0.978 17 N -0.850 5.850 18 C -0.103 4.103 19 C 0.071 3.929 20 H 0.264 0.736 21 H -0.009 1.009 22 H -0.014 1.014 23 H 0.017 0.983 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.348 0.652 32 H 0.347 0.653 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -15.904 3.555 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.042 4.042 11 N -0.290 5.290 12 C -0.069 4.069 13 C -0.180 4.180 14 C -0.143 4.143 15 C -0.013 4.013 16 H 0.040 0.960 17 N -0.381 5.381 18 C -0.141 4.141 19 C -0.057 4.057 20 H 0.072 0.928 21 H 0.010 0.990 22 H 0.005 0.995 23 H 0.036 0.964 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 4.391 -15.877 2.479 16.659 hybrid contribution 0.903 1.381 1.559 2.271 sum 5.294 -14.496 4.038 15.952 Atomic orbital electron populations 1.70121 1.07908 1.27761 1.51504 1.25985 0.95739 1.03382 0.94602 0.85416 0.78600 0.78253 0.78565 1.19651 1.20698 1.18702 1.21648 0.93506 0.92337 1.50860 0.92178 1.18897 0.94255 0.92120 0.94688 1.21978 0.95120 0.88636 0.98491 1.61863 1.34641 1.03567 1.28900 1.22041 0.94487 0.93611 0.96795 1.21826 0.99786 0.97182 0.99209 1.20487 0.96844 0.97112 0.99888 1.20263 0.94189 0.90221 0.96604 0.95971 1.58804 1.14213 1.15600 1.49501 1.21367 0.98093 0.92228 1.02401 1.21642 0.97517 0.97064 0.89427 0.92768 0.99036 0.99534 0.96430 0.91959 0.91509 0.90532 0.93416 0.89534 0.91041 0.91087 0.83806 0.83936 0.90844 0.90430 0.93400 0.95790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -31.93 9.11 25.60 0.23 -31.69 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.04 2.11 5.00 29.85 0.15 2.26 16 10 C 0.09 3.75 4.89 86.30 0.42 4.18 16 11 N -0.56 -21.15 4.61 -899.67 -4.15 -25.30 16 12 C 0.06 1.67 5.17 85.23 0.44 2.11 16 13 C -0.14 -3.35 5.58 30.21 0.17 -3.18 16 14 C -0.11 -2.19 4.76 28.86 0.14 -2.05 16 15 C 0.10 2.16 2.76 43.18 0.12 2.28 16 16 H 0.02 0.52 7.52 -2.38 -0.02 0.51 16 17 N -0.85 -15.07 9.19 -176.01 -1.62 -16.68 16 18 C -0.10 -2.74 5.21 30.21 0.16 -2.58 16 19 C 0.07 2.45 4.70 85.26 0.40 2.85 16 20 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 21 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 22 H -0.01 -0.82 7.35 -2.39 -0.02 -0.84 16 23 H 0.02 0.76 7.78 -2.39 -0.02 0.75 16 24 H 0.06 2.66 7.45 -2.39 -0.02 2.64 16 25 H 0.07 1.92 7.45 -2.38 -0.02 1.90 16 26 H 0.08 2.08 6.61 -2.38 -0.02 2.07 16 27 H 0.05 1.31 7.00 -2.39 -0.02 1.29 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 1.52 7.53 -2.39 -0.02 1.51 16 30 H 0.07 1.24 8.13 -2.39 -0.02 1.23 16 31 H 0.35 4.88 8.99 -89.69 -0.81 4.08 16 32 H 0.35 5.44 8.80 -89.70 -0.79 4.65 16 33 H 0.07 2.08 7.09 -2.38 -0.02 2.06 16 34 H 0.08 1.90 7.93 -2.38 -0.02 1.88 16 35 H 0.05 1.89 7.39 -2.39 -0.02 1.88 16 36 H 0.02 0.83 6.24 -2.38 -0.01 0.81 16 Total: -1.00 -65.90 276.15 -1.30 -67.20 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -0.53 Total: 11.14 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: 2.69 Total: -25.33 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -5.48 Total: -99.94 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.90 -1.30 -67.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400862.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.062 kcal (2) G-P(sol) polarization free energy of solvation -65.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds