Wall clock time and date at job start Mon Mar 30 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00333 * 2 1 4 4 H 1.48503 * 109.47482 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46978 * 300.00244 * 3 2 1 6 6 H 1.48495 * 109.47426 * 59.99905 * 3 2 1 7 7 C 1.37882 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00105 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47223 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47262 * 179.97438 * 10 9 7 12 12 C 1.47631 * 110.99790 * 66.04714 * 11 10 9 13 13 C 1.50817 * 108.03825 * 150.33040 * 12 11 10 14 14 C 1.53818 * 111.56579 * 95.09102 * 13 12 11 15 15 C 1.54120 * 112.00323 * 318.93934 * 14 13 12 16 16 H 1.08993 * 108.79624 * 79.37708 * 15 14 13 17 17 N 1.46892 * 108.88362 * 197.75078 * 15 14 13 18 18 C 1.50761 * 112.64255 * 318.59483 * 15 14 13 19 19 C 1.39778 * 110.99846 * 297.13905 * 11 10 9 20 20 H 0.96998 * 119.99844 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47818 * 59.99914 * 9 7 2 22 22 H 1.09005 * 109.47395 * 299.99862 * 9 7 2 23 23 H 1.09004 * 109.47456 * 59.99770 * 10 9 7 24 24 H 1.09001 * 109.46787 * 299.99616 * 10 9 7 25 25 H 1.08994 * 109.75259 * 30.69466 * 12 11 10 26 26 H 1.09000 * 109.78786 * 269.98318 * 12 11 10 27 27 H 1.09002 * 109.05020 * 215.60869 * 13 12 11 28 28 H 1.09000 * 109.04907 * 334.57917 * 13 12 11 29 29 H 1.09001 * 108.97803 * 79.64319 * 14 13 12 30 30 H 1.08997 * 108.98082 * 198.36210 * 14 13 12 31 31 H 1.00909 * 110.99575 * 303.14161 * 17 15 14 32 32 H 1.00901 * 111.00258 * 67.09518 * 17 15 14 33 33 H 1.09002 * 109.54147 * 333.09305 * 18 15 14 34 34 H 1.09003 * 109.54292 * 212.82167 * 18 15 14 35 35 H 1.08995 * 109.02439 * 309.72519 * 19 11 10 36 36 H 1.08999 * 109.01832 * 68.63107 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5106 -4.9343 0.0001 12 6 0.7611 -5.1130 -1.2592 13 6 0.6612 -6.5920 -1.5373 14 6 -0.6613 -7.1776 -1.0138 15 6 -1.0394 -6.6063 0.3668 16 1 -1.4791 -5.6184 0.2296 17 7 -2.0388 -7.4857 0.9877 18 6 0.1462 -6.4878 1.2904 19 6 0.7451 -5.0701 1.1617 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5568 -0.8902 22 1 0.6246 -2.5571 0.8897 23 1 2.8719 -3.6044 0.8894 24 1 2.8718 -3.6044 -0.8906 25 1 1.2890 -4.6197 -2.0752 26 1 -0.2379 -4.6892 -1.1573 27 1 0.7220 -6.7566 -2.6131 28 1 1.4930 -7.1023 -1.0519 29 1 -1.4563 -6.9476 -1.7232 30 1 -0.5624 -8.2601 -0.9332 31 1 -2.8488 -7.5878 0.3947 32 1 -1.6396 -8.3847 1.2125 33 1 0.8980 -7.2275 1.0153 34 1 -0.1742 -6.6564 2.3185 35 1 1.3756 -4.8708 2.0281 36 1 -0.0670 -4.3434 1.1388 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885400864.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:40 Heat of formation + Delta-G solvation = -11.699878 kcal Electronic energy + Delta-G solvation = -14783.501399 eV Core-core repulsion = 12494.681129 eV Total energy + Delta-G solvation = -2288.820270 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.29931 -35.85354 -33.06694 -32.30322 -30.52985 -28.55773 -25.81338 -24.25722 -23.38307 -21.69451 -19.58747 -19.09004 -16.52080 -15.73251 -15.55138 -14.95637 -14.73626 -14.46637 -13.68824 -13.54852 -13.01015 -12.64308 -12.40715 -11.88236 -11.58685 -11.34441 -11.19444 -10.94231 -10.80437 -10.63760 -10.32602 -10.28759 -10.15696 -9.82617 -9.68112 -9.11330 -8.63224 -8.35689 -7.36127 -6.00920 -4.03887 3.30331 3.37886 3.42130 4.43725 4.58347 4.61576 4.96033 5.04617 5.26867 5.34568 5.46358 5.48298 5.69860 5.85450 5.96601 6.00604 6.06886 6.16536 6.29368 6.36284 6.41849 6.49528 6.55733 6.63747 6.77202 6.95155 7.20133 7.45894 7.59245 7.67091 7.76581 8.00895 8.13293 8.43762 9.03806 9.60405 11.10113 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050477 B = 0.006737 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.577043 B = 4155.392550 C = 4288.945680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.056 0.944 9 C -0.009 4.009 10 C 0.062 3.938 11 N -0.558 5.558 12 C 0.066 3.934 13 C -0.112 4.112 14 C -0.147 4.147 15 C 0.087 3.913 16 H 0.078 0.922 17 N -0.846 5.846 18 C -0.111 4.111 19 C 0.076 3.924 20 H 0.259 0.741 21 H 0.015 0.985 22 H 0.018 0.982 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.336 0.664 32 H 0.334 0.666 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 -13.912 -1.013 13.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.047 4.047 10 C -0.064 4.064 11 N -0.282 5.282 12 C -0.061 4.061 13 C -0.151 4.151 14 C -0.186 4.186 15 C -0.024 4.024 16 H 0.096 0.904 17 N -0.373 5.373 18 C -0.149 4.149 19 C -0.055 4.055 20 H 0.069 0.931 21 H 0.033 0.967 22 H 0.036 0.964 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.892 -13.611 -0.394 13.646 hybrid contribution -0.113 1.040 -0.930 1.400 sum -1.005 -12.571 -1.324 12.680 Atomic orbital electron populations 1.69979 1.06094 1.26467 1.50877 1.25032 0.94831 0.99306 0.95276 0.86540 0.80151 0.83781 0.77561 1.19684 1.21049 1.21019 1.21211 0.93058 0.90963 1.50532 0.92554 1.19663 0.94975 0.92782 0.97283 1.22336 0.96643 0.86503 1.00925 1.59274 1.31293 1.35982 1.01617 1.21677 0.97210 0.95016 0.92186 1.21384 0.97117 0.96813 0.99774 1.22747 0.98414 0.99492 0.97969 1.21455 0.92607 0.97038 0.91289 0.90408 1.59174 1.09889 1.18100 1.50178 1.21557 0.96041 0.98115 0.99221 1.20836 0.96608 0.94839 0.93192 0.93090 0.96659 0.96422 0.92177 0.92141 0.91110 0.94062 0.92592 0.90866 0.92710 0.92923 0.85268 0.85358 0.91560 0.90867 0.91491 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C -0.01 -0.23 4.43 -27.88 -0.12 -0.35 16 10 C 0.06 1.32 5.09 -3.82 -0.02 1.30 16 11 N -0.56 -10.11 4.11 -240.00 -0.99 -11.10 16 12 C 0.07 1.12 4.31 -4.52 -0.02 1.10 16 13 C -0.11 -1.51 5.41 -27.40 -0.15 -1.66 16 14 C -0.15 -1.77 5.44 -25.72 -0.14 -1.91 16 15 C 0.09 1.17 2.72 -68.25 -0.19 0.99 16 16 H 0.08 1.26 6.58 -51.93 -0.34 0.92 16 17 N -0.85 -9.72 9.09 -5.13 -0.05 -9.76 16 18 C -0.11 -1.58 5.25 -27.10 -0.14 -1.72 16 19 C 0.08 1.33 4.43 -6.74 -0.03 1.30 16 20 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 21 H 0.02 0.42 7.31 -51.93 -0.38 0.04 16 22 H 0.02 0.49 6.66 -51.93 -0.35 0.14 16 23 H 0.06 1.26 7.99 -51.93 -0.41 0.85 16 24 H 0.06 1.26 7.92 -51.93 -0.41 0.85 16 25 H 0.07 1.23 7.67 -51.93 -0.40 0.83 16 26 H 0.04 0.76 6.56 -51.93 -0.34 0.42 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.01 7.26 -51.93 -0.38 0.64 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.56 8.13 -51.93 -0.42 0.14 16 31 H 0.34 3.37 8.99 -39.29 -0.35 3.02 16 32 H 0.33 3.28 8.97 -39.29 -0.35 2.93 16 33 H 0.07 0.91 7.11 -51.93 -0.37 0.54 16 34 H 0.07 1.02 7.96 -51.93 -0.41 0.60 16 35 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 36 H 0.03 0.63 6.08 -51.93 -0.32 0.31 16 LS Contribution 274.40 15.07 4.14 4.14 Total: -1.00 -29.78 274.40 -8.43 -38.22 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.03 Total: 2.65 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -1.22 Total: -14.50 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.30 Total: -47.28 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.78 -8.43 -38.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885400864.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.517 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds