Wall clock time and date at job start Mon Mar 30 2020 02:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47241 * 2 1 4 4 H 1.09003 * 109.49145 * 305.11007 * 3 2 1 5 5 C 1.53047 * 109.49041 * 65.15798 * 3 2 1 6 6 N 1.46963 * 109.36703 * 178.38930 * 5 3 2 7 7 C 1.46893 * 110.99905 * 176.81354 * 6 5 3 8 8 C 1.50697 * 109.47425 * 65.15319 * 7 6 5 9 9 H 1.07996 * 120.00112 * 354.86059 * 8 7 6 10 10 C 1.37884 * 120.00086 * 174.86788 * 8 7 6 11 11 N 1.31511 * 119.99769 * 359.97438 * 10 8 7 12 12 Si 1.86790 * 119.99884 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47249 * 89.99814 * 12 10 8 14 14 H 1.48496 * 109.47204 * 209.99553 * 12 10 8 15 15 H 1.48497 * 109.47710 * 329.99918 * 12 10 8 16 16 C 1.46954 * 110.87921 * 300.68198 * 6 5 3 17 17 C 1.53047 * 109.36580 * 59.31729 * 16 6 5 18 18 N 1.46954 * 109.36810 * 301.59911 * 17 16 6 19 19 C 1.46904 * 111.00420 * 183.18986 * 18 17 16 20 20 H 1.08997 * 109.47174 * 174.23354 * 1 2 3 21 21 H 1.09000 * 109.46728 * 294.22633 * 1 2 3 22 22 H 1.08992 * 109.47223 * 54.23287 * 1 2 3 23 23 H 1.09009 * 109.47164 * 240.00029 * 2 1 3 24 24 H 1.09001 * 109.47534 * 120.00317 * 2 1 3 25 25 H 1.08998 * 109.48729 * 298.36029 * 5 3 2 26 26 H 1.09005 * 109.49009 * 58.42671 * 5 3 2 27 27 H 1.09003 * 109.46880 * 185.15529 * 7 6 5 28 28 H 1.08998 * 109.47342 * 305.14847 * 7 6 5 29 29 H 0.97005 * 120.00095 * 179.97438 * 11 10 8 30 30 H 1.08997 * 109.49017 * 299.35144 * 16 6 5 31 31 H 1.09001 * 109.48818 * 179.28648 * 16 6 5 32 32 H 1.09009 * 109.49078 * 181.63203 * 17 16 6 33 33 H 1.08996 * 109.50785 * 61.57967 * 17 16 6 34 34 H 1.08998 * 109.46943 * 289.89245 * 19 18 17 35 35 H 1.09005 * 109.46649 * 49.88814 * 19 18 17 36 36 H 1.08998 * 109.47297 * 169.88800 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6040 1.9823 -0.8406 5 6 1.6387 2.1259 1.3093 6 7 2.1630 3.4988 1.3229 7 6 1.7343 4.2139 2.5323 8 6 2.3486 3.5634 3.7449 9 1 2.9249 2.6564 3.6375 10 6 2.1747 4.1261 4.9917 11 7 1.4732 5.2308 5.1224 12 14 2.9355 3.3193 6.4948 13 1 4.2994 3.8649 6.7125 14 1 2.0944 3.5996 7.6861 15 1 3.0177 1.8521 6.2810 16 6 3.6275 3.5014 1.2007 17 6 4.0287 2.8180 -0.1085 18 7 3.5045 1.4452 -0.1222 19 6 3.9332 0.7298 -1.3316 20 1 -0.3633 -1.0224 -0.1032 21 1 -0.3633 0.4217 0.9372 22 1 -0.3633 0.6006 -0.8338 23 1 1.8934 -0.5139 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 0.5519 2.1508 1.3882 26 1 2.0522 1.5704 2.1511 27 1 2.0585 5.2530 2.4740 28 1 0.6479 4.1762 2.6109 29 1 1.3506 5.6265 5.9996 30 1 4.0635 2.9616 2.0412 31 1 3.9905 4.5292 1.2006 32 1 5.1156 2.7930 -0.1876 33 1 3.6156 3.3733 -0.9505 34 1 3.4206 1.1443 -2.1997 35 1 5.0101 0.8422 -1.4576 36 1 3.6871 -0.3276 -1.2348 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082478121.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:17 Heat of formation + Delta-G solvation = 1.546602 kcal Electronic energy + Delta-G solvation = -15020.703570 eV Core-core repulsion = 12732.457710 eV Total energy + Delta-G solvation = -2288.245860 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.00727 -35.26594 -33.49145 -32.34249 -29.07050 -28.25880 -25.77448 -24.05442 -23.46008 -21.76821 -20.25463 -19.06286 -16.39098 -15.51291 -15.08310 -14.69071 -14.51028 -14.11188 -13.48956 -13.36958 -12.85860 -12.80820 -12.14528 -11.92325 -11.75147 -11.53423 -11.21531 -11.01752 -10.85606 -10.77113 -10.40948 -10.38203 -10.10250 -9.97161 -9.74147 -9.41183 -8.40260 -7.98293 -7.12646 -5.99505 -4.08244 3.29849 3.36513 3.40536 4.23108 4.43781 5.00705 5.16778 5.30857 5.32136 5.37074 5.55742 5.60156 5.72983 5.77862 5.84917 5.95994 5.98982 6.04121 6.15090 6.20259 6.36318 6.38651 6.50155 6.69326 6.84014 6.93101 7.26207 7.41422 7.49370 7.55836 7.93537 8.10158 8.33224 8.34015 9.02654 9.58418 11.05475 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033986 B = 0.008769 C = 0.008213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.673982 B = 3192.134602 C = 3408.337472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.087 3.913 4 H 0.041 0.959 5 C 0.070 3.930 6 N -0.546 5.546 7 C 0.187 3.813 8 C -0.547 4.547 9 H 0.059 0.941 10 C 0.064 3.936 11 N -0.892 5.892 12 Si 0.889 3.111 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.065 3.935 17 C 0.059 3.941 18 N -0.540 5.540 19 C 0.025 3.975 20 H 0.050 0.950 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.026 0.974 29 H 0.262 0.738 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.032 0.968 34 H 0.020 0.980 35 H 0.061 0.939 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 -8.048 -10.593 13.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.022 4.022 4 H 0.059 0.941 5 C -0.058 4.058 6 N -0.270 5.270 7 C 0.062 3.938 8 C -0.586 4.586 9 H 0.077 0.923 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.717 3.283 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.064 4.064 17 C -0.070 4.070 18 N -0.265 5.265 19 C -0.124 4.124 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.080 0.920 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.859 -7.892 -10.458 13.233 hybrid contribution 0.440 -0.337 0.970 1.118 sum 2.299 -8.229 -9.488 12.768 Atomic orbital electron populations 1.21780 0.95661 1.01062 1.02360 1.21592 0.95644 0.96216 1.02078 1.21816 0.86550 0.95243 0.98550 0.94145 1.21988 0.99146 0.90077 0.94635 1.62672 1.08866 1.14021 1.41424 1.19726 0.95953 0.94083 0.84078 1.21775 1.33425 1.10497 0.92890 0.92311 1.24967 0.95084 0.94824 0.98978 1.69948 1.39898 1.19463 1.23808 0.86642 0.79205 0.79872 0.82605 1.20659 1.21197 1.19913 1.21919 0.90133 0.99316 0.95069 1.22240 0.98602 0.87709 0.98401 1.62117 1.10866 1.16174 1.37308 1.22368 1.00144 0.99121 0.90740 0.93059 0.91983 0.92966 0.92305 0.91317 0.91373 0.93582 0.94784 0.95553 0.92870 0.93245 0.91394 0.91330 0.94977 0.96164 0.92023 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.53 37.16 0.35 -1.54 16 2 C -0.12 -1.62 5.23 -26.74 -0.14 -1.76 16 3 C 0.09 1.45 2.01 -67.66 -0.14 1.31 16 4 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 5 C 0.07 1.42 4.32 -3.77 -0.02 1.41 16 6 N -0.55 -12.17 4.92 -235.92 -1.16 -13.33 16 7 C 0.19 4.92 5.14 -4.98 -0.03 4.90 16 8 C -0.55 -15.27 7.66 -34.44 -0.26 -15.53 16 9 H 0.06 1.65 5.82 -52.49 -0.31 1.35 16 10 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 11 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 12 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 C 0.06 1.32 5.23 -3.77 -0.02 1.30 16 17 C 0.06 0.99 5.61 -3.77 -0.02 0.96 16 18 N -0.54 -8.84 4.78 -234.73 -1.12 -9.96 16 19 C 0.02 0.32 8.99 60.07 0.54 0.86 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.85 6.90 -51.93 -0.36 0.49 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.72 6.22 -51.92 -0.32 0.40 16 24 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.07 1.36 6.76 -51.93 -0.35 1.01 16 26 H 0.05 1.04 6.80 -51.93 -0.35 0.69 16 27 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.03 0.73 8.11 -51.93 -0.42 0.31 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.05 1.12 6.60 -51.93 -0.34 0.78 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.07 1.02 8.07 -51.92 -0.42 0.60 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.25 8.12 -51.93 -0.42 -0.17 16 35 H 0.06 0.72 8.02 -51.93 -0.42 0.30 16 36 H 0.07 0.78 6.52 -51.93 -0.34 0.44 16 LS Contribution 276.26 15.07 4.16 4.16 Total: -1.00 -29.33 276.26 -8.37 -37.71 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -6.14 Total: -3.15 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 0.17 Total: -6.38 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -1.55 Total: -49.07 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.33 -8.37 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082478121.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.256 kcal (2) G-P(sol) polarization free energy of solvation -29.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds