Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47322 * 2 1 4 4 H 1.09009 * 109.52937 * 304.90169 * 3 2 1 5 5 C 1.53034 * 109.50361 * 64.99758 * 3 2 1 6 6 N 1.46847 * 109.51345 * 179.12014 * 5 3 2 7 7 C 1.46898 * 110.99897 * 174.16738 * 6 5 3 8 8 C 1.50704 * 109.46918 * 189.99613 * 7 6 5 9 9 H 1.07995 * 120.00254 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99638 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00308 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99571 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47176 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47012 * 119.99959 * 12 10 8 15 15 H 1.48501 * 109.46671 * 239.99751 * 12 10 8 16 16 C 1.46854 * 111.19790 * 298.26320 * 6 5 3 17 17 C 1.53039 * 109.52227 * 61.74204 * 16 6 5 18 18 C 1.53099 * 109.48809 * 184.81204 * 3 2 1 19 19 H 1.09002 * 109.57693 * 302.32940 * 18 3 2 20 20 N 1.46896 * 109.52892 * 62.49406 * 18 3 2 21 21 H 1.08998 * 109.47488 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47233 * 300.00016 * 1 2 3 23 23 H 1.08999 * 109.47259 * 59.99891 * 1 2 3 24 24 H 1.09004 * 109.47233 * 239.99984 * 2 1 3 25 25 H 1.08999 * 109.47274 * 119.99552 * 2 1 3 26 26 H 1.09002 * 109.46271 * 59.10734 * 5 3 2 27 27 H 1.08994 * 109.46242 * 299.13033 * 5 3 2 28 28 H 1.08994 * 109.47159 * 309.99836 * 7 6 5 29 29 H 1.09006 * 109.47282 * 69.99962 * 7 6 5 30 30 H 0.96993 * 120.00248 * 180.02562 * 11 10 8 31 31 H 1.08993 * 109.46229 * 181.76227 * 16 6 5 32 32 H 1.09008 * 109.45822 * 301.73281 * 16 6 5 33 33 H 1.08994 * 109.50227 * 60.75933 * 17 16 6 34 34 H 1.09000 * 109.50337 * 180.88158 * 17 16 6 35 35 H 1.00895 * 110.99942 * 179.67983 * 20 18 3 36 36 H 1.00899 * 111.00160 * 303.63135 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6073 1.9821 -0.8426 5 6 1.6355 2.1275 1.3074 6 7 2.1430 3.5055 1.3166 7 6 1.6572 4.2375 2.4939 8 6 1.9889 5.7003 2.3479 9 1 2.5082 6.0511 1.4685 10 6 1.6292 6.5908 3.3374 11 7 0.9963 6.1637 4.4081 12 14 2.0397 8.4041 3.1561 13 1 2.7484 8.6251 1.8699 14 1 0.7860 9.1996 3.1741 15 1 2.9118 8.8289 4.2806 16 6 3.6098 3.5316 1.2490 17 6 4.0729 2.8883 -0.0601 18 6 3.5662 1.4447 -0.1211 19 1 3.9984 0.8719 0.6994 20 7 3.9580 0.8405 -1.4014 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0570 1.5795 2.1500 27 1 0.5487 2.1402 1.3896 28 1 0.5772 4.1163 2.5769 29 1 2.1369 3.8438 3.3901 30 1 0.7430 6.7901 5.1039 31 1 3.9568 4.5640 1.2892 32 1 4.0221 2.9769 2.0920 33 1 3.6722 3.4505 -0.9035 34 1 5.1621 2.8938 -0.1028 35 1 4.9615 0.8353 -1.5067 36 1 3.5801 -0.0906 -1.4927 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122838561.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = -16.688895 kcal Electronic energy + Delta-G solvation = -14779.686003 eV Core-core repulsion = 12490.649393 eV Total energy + Delta-G solvation = -2289.036610 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.95181 -35.11426 -33.44123 -32.48893 -29.79964 -28.63523 -26.32800 -23.82328 -22.98759 -21.24588 -20.20252 -19.16107 -16.32045 -15.66001 -15.34181 -14.71882 -14.56874 -14.26853 -13.70547 -13.17022 -13.10166 -12.57120 -12.45083 -12.01987 -11.74373 -11.39640 -11.30137 -10.93517 -10.77854 -10.57084 -10.47648 -10.36776 -10.15420 -9.80247 -9.58709 -9.10073 -8.56339 -8.41536 -7.16518 -6.00483 -4.01512 3.32586 3.39881 3.45225 4.44463 4.61212 4.85847 5.01661 5.12298 5.22707 5.35370 5.50011 5.57982 5.73767 5.77570 5.86016 6.03433 6.05969 6.13536 6.21696 6.24074 6.29048 6.39956 6.53967 6.66632 6.74828 6.82686 7.30240 7.34919 7.39030 7.52744 7.84561 8.14039 8.26530 8.60510 9.06986 9.62756 11.10544 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042128 B = 0.007602 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.480163 B = 3682.170793 C = 4155.432254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.077 4.077 4 H 0.084 0.916 5 C 0.062 3.938 6 N -0.536 5.536 7 C 0.193 3.807 8 C -0.505 4.505 9 H 0.064 0.936 10 C 0.054 3.946 11 N -0.900 5.900 12 Si 0.897 3.103 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.285 1.285 16 C 0.066 3.934 17 C -0.109 4.109 18 C 0.096 3.904 19 H 0.026 0.974 20 N -0.846 5.846 21 H 0.047 0.953 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.054 0.946 26 H 0.017 0.983 27 H 0.071 0.929 28 H 0.030 0.970 29 H -0.011 1.011 30 H 0.260 0.740 31 H 0.085 0.915 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.335 0.665 36 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 -11.245 -7.839 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.096 4.096 4 H 0.103 0.897 5 C -0.068 4.068 6 N -0.260 5.260 7 C 0.068 3.932 8 C -0.544 4.544 9 H 0.082 0.918 10 C -0.147 4.147 11 N -0.540 5.540 12 Si 0.725 3.275 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.212 1.212 16 C -0.063 4.063 17 C -0.147 4.147 18 C -0.015 4.015 19 H 0.044 0.956 20 N -0.376 5.376 21 H 0.067 0.933 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.025 -10.336 -8.412 13.666 hybrid contribution 0.958 -0.169 1.441 1.739 sum 3.983 -10.505 -6.971 13.222 Atomic orbital electron populations 1.21786 0.95710 1.00957 1.02441 1.21565 0.96329 0.96840 1.00967 1.21244 0.93914 0.94969 0.99462 0.89724 1.22079 0.99999 0.90118 0.94570 1.62012 1.07880 1.11327 1.44802 1.19706 0.95574 0.93060 0.84879 1.21226 1.36852 0.91909 1.04412 0.91755 1.24999 0.95371 0.99092 0.95236 1.69968 1.40426 1.34782 1.08785 0.86453 0.78062 0.84984 0.78009 1.19622 1.21008 1.21159 1.21922 0.89222 1.01061 0.94097 1.21646 0.98845 0.94533 0.99664 1.21405 0.95661 0.95472 0.88959 0.95608 1.58794 1.16126 1.26731 1.35996 0.93348 0.92206 0.92577 0.92191 0.92729 0.96475 0.91061 0.95226 0.99305 0.93022 0.89671 0.96639 0.90573 0.92813 0.85267 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.67 37.15 0.36 -1.45 16 2 C -0.12 -1.47 5.24 -26.73 -0.14 -1.61 16 3 C -0.08 -1.18 2.05 -90.55 -0.19 -1.36 16 4 H 0.08 1.44 8.14 -51.92 -0.42 1.02 16 5 C 0.06 1.15 4.48 -3.84 -0.02 1.13 16 6 N -0.54 -11.89 4.65 -236.11 -1.10 -12.99 16 7 C 0.19 5.14 4.72 -4.98 -0.02 5.12 16 8 C -0.51 -14.41 8.43 -34.44 -0.29 -14.70 16 9 H 0.06 1.82 7.12 -52.49 -0.37 1.45 16 10 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 11 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 12 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 13 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.07 1.32 5.30 -3.83 -0.02 1.30 16 17 C -0.11 -1.77 5.67 -26.65 -0.15 -1.93 16 18 C 0.10 1.39 2.80 -67.60 -0.19 1.20 16 19 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 20 N -0.85 -10.16 9.24 -4.57 -0.04 -10.20 16 21 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.06 0.77 6.59 -51.93 -0.34 0.43 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.65 6.42 -51.93 -0.33 0.32 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 1.34 6.48 -51.93 -0.34 1.00 16 28 H 0.03 0.84 7.99 -51.93 -0.41 0.43 16 29 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.08 1.85 6.70 -51.93 -0.35 1.50 16 32 H 0.02 0.31 8.14 -51.92 -0.42 -0.11 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.34 3.47 9.04 -39.29 -0.36 3.12 16 36 H 0.34 3.48 7.06 -39.29 -0.28 3.20 16 LS Contribution 278.95 15.07 4.20 4.20 Total: -1.00 -29.89 278.95 -8.12 -38.01 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.14 Total: 1.31 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.76 Total: -10.84 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.40 Total: -49.52 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.89 -8.12 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122838561.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.323 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds