Wall clock time and date at job start Mon Mar 30 2020 02:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47322 * 2 1 4 4 H 1.09009 * 109.52937 * 304.90169 * 3 2 1 5 5 C 1.53034 * 109.50361 * 64.99758 * 3 2 1 6 6 N 1.46847 * 109.51345 * 179.12014 * 5 3 2 7 7 C 1.46898 * 110.99897 * 174.16738 * 6 5 3 8 8 C 1.50704 * 109.46918 * 189.99613 * 7 6 5 9 9 H 1.07995 * 120.00254 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99638 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00308 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99571 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47176 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47012 * 119.99959 * 12 10 8 15 15 H 1.48501 * 109.46671 * 239.99751 * 12 10 8 16 16 C 1.46854 * 111.19790 * 298.26320 * 6 5 3 17 17 C 1.53039 * 109.52227 * 61.74204 * 16 6 5 18 18 C 1.53099 * 109.48809 * 184.81204 * 3 2 1 19 19 H 1.09002 * 109.57693 * 302.32940 * 18 3 2 20 20 N 1.46896 * 109.52892 * 62.49406 * 18 3 2 21 21 H 1.08998 * 109.47488 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47233 * 300.00016 * 1 2 3 23 23 H 1.08999 * 109.47259 * 59.99891 * 1 2 3 24 24 H 1.09004 * 109.47233 * 239.99984 * 2 1 3 25 25 H 1.08999 * 109.47274 * 119.99552 * 2 1 3 26 26 H 1.09002 * 109.46271 * 59.10734 * 5 3 2 27 27 H 1.08994 * 109.46242 * 299.13033 * 5 3 2 28 28 H 1.08994 * 109.47159 * 309.99836 * 7 6 5 29 29 H 1.09006 * 109.47282 * 69.99962 * 7 6 5 30 30 H 0.96993 * 120.00248 * 180.02562 * 11 10 8 31 31 H 1.08993 * 109.46229 * 181.76227 * 16 6 5 32 32 H 1.09008 * 109.45822 * 301.73281 * 16 6 5 33 33 H 1.08994 * 109.50227 * 60.75933 * 17 16 6 34 34 H 1.09000 * 109.50337 * 180.88158 * 17 16 6 35 35 H 1.00895 * 110.99942 * 179.67983 * 20 18 3 36 36 H 1.00899 * 111.00160 * 303.63135 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6073 1.9821 -0.8426 5 6 1.6355 2.1275 1.3074 6 7 2.1430 3.5055 1.3166 7 6 1.6572 4.2375 2.4939 8 6 1.9889 5.7003 2.3479 9 1 2.5082 6.0511 1.4685 10 6 1.6292 6.5908 3.3374 11 7 0.9963 6.1637 4.4081 12 14 2.0397 8.4041 3.1561 13 1 2.7484 8.6251 1.8699 14 1 0.7860 9.1996 3.1741 15 1 2.9118 8.8289 4.2806 16 6 3.6098 3.5316 1.2490 17 6 4.0729 2.8883 -0.0601 18 6 3.5662 1.4447 -0.1211 19 1 3.9984 0.8719 0.6994 20 7 3.9580 0.8405 -1.4014 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.0570 1.5795 2.1500 27 1 0.5487 2.1402 1.3896 28 1 0.5772 4.1163 2.5769 29 1 2.1369 3.8438 3.3901 30 1 0.7430 6.7901 5.1039 31 1 3.9568 4.5640 1.2892 32 1 4.0221 2.9769 2.0920 33 1 3.6722 3.4505 -0.9035 34 1 5.1621 2.8938 -0.1028 35 1 4.9615 0.8353 -1.5067 36 1 3.5801 -0.0906 -1.4927 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122838561.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:59 Heat of formation + Delta-G solvation = -38.483829 kcal Electronic energy + Delta-G solvation = -14780.631102 eV Core-core repulsion = 12490.649393 eV Total energy + Delta-G solvation = -2289.981710 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.37623 -36.71182 -34.63759 -34.50934 -31.29881 -30.05803 -28.15358 -25.12650 -24.83853 -22.73084 -21.67845 -20.52385 -18.48445 -17.03306 -16.74884 -16.23722 -16.00864 -15.84385 -15.22651 -14.63941 -14.40975 -14.12225 -13.92972 -13.72641 -13.25265 -12.87407 -12.76152 -12.62529 -12.45921 -12.20002 -12.03900 -11.96841 -11.57425 -11.47701 -11.06726 -10.93226 -10.63322 -9.55806 -9.01504 -8.22199 -6.32678 1.39926 1.40787 1.54803 2.39397 3.09737 3.25771 3.58191 3.77390 3.87339 4.05042 4.30160 4.38525 4.44419 4.47504 4.61677 4.68536 4.74055 4.82166 4.90726 5.05158 5.08856 5.12622 5.18071 5.23191 5.29106 5.36228 5.43822 5.52315 5.65322 6.04352 6.29838 6.35306 6.65342 6.70002 6.84130 7.37341 8.89385 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042128 B = 0.007602 C = 0.006737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.480163 B = 3682.170793 C = 4155.432254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.069 4.069 4 H 0.070 0.930 5 C 0.061 3.939 6 N -0.544 5.544 7 C 0.208 3.792 8 C -0.524 4.524 9 H 0.063 0.937 10 C 0.000 4.000 11 N -0.936 5.936 12 Si 0.971 3.029 13 H -0.263 1.263 14 H -0.277 1.277 15 H -0.277 1.277 16 C 0.066 3.934 17 C -0.099 4.099 18 C 0.103 3.897 19 H 0.030 0.970 20 N -0.843 5.843 21 H 0.069 0.931 22 H 0.041 0.959 23 H 0.054 0.946 24 H 0.084 0.916 25 H 0.059 0.941 26 H 0.013 0.987 27 H 0.063 0.937 28 H 0.002 0.998 29 H -0.041 1.041 30 H 0.265 0.735 31 H 0.063 0.937 32 H 0.011 0.989 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.349 0.651 36 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 -11.870 -9.331 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.088 4.088 4 H 0.088 0.912 5 C -0.068 4.068 6 N -0.269 5.269 7 C 0.082 3.918 8 C -0.562 4.562 9 H 0.081 0.919 10 C -0.198 4.198 11 N -0.576 5.576 12 Si 0.796 3.204 13 H -0.187 1.187 14 H -0.203 1.203 15 H -0.202 1.202 16 C -0.063 4.063 17 C -0.137 4.137 18 C -0.009 4.009 19 H 0.048 0.952 20 N -0.376 5.376 21 H 0.088 0.912 22 H 0.060 0.940 23 H 0.073 0.927 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.032 0.968 27 H 0.081 0.919 28 H 0.020 0.980 29 H -0.023 1.023 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.029 0.971 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.162 0.838 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.039 -10.992 -9.928 15.352 hybrid contribution 0.632 -0.021 1.913 2.015 sum 4.672 -11.013 -8.015 14.399 Atomic orbital electron populations 1.21789 0.95539 1.02094 1.01528 1.21530 0.96461 0.94617 1.02359 1.21153 0.94858 0.96406 0.96370 0.91189 1.22171 0.99490 0.88402 0.96725 1.61961 1.09449 1.13324 1.42152 1.19357 0.93626 0.93293 0.85564 1.21501 1.37124 0.92962 1.04589 0.91904 1.25951 0.94913 1.04217 0.94671 1.70093 1.41224 1.36697 1.09628 0.85303 0.78097 0.78615 0.78421 1.18705 1.20274 1.20248 1.21930 0.87721 1.00252 0.96349 1.21544 1.00321 0.95366 0.96513 1.21207 0.94711 0.94449 0.90491 0.95224 1.58663 1.17364 1.27611 1.33966 0.91186 0.93967 0.92696 0.89751 0.92237 0.96837 0.91878 0.97977 1.02333 0.92631 0.91866 0.97074 0.91677 0.90274 0.83764 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.67 71.98 0.70 -2.69 16 2 C -0.11 -2.50 5.24 30.59 0.16 -2.34 16 3 C -0.07 -2.02 2.05 -10.75 -0.02 -2.04 16 4 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 5 C 0.06 2.31 4.48 86.32 0.39 2.69 16 6 N -0.54 -24.92 4.65 -900.91 -4.19 -29.11 16 7 C 0.21 11.63 4.72 85.56 0.40 12.03 16 8 C -0.52 -30.69 8.43 25.60 0.22 -30.48 16 9 H 0.06 3.62 7.12 -2.91 -0.02 3.60 16 10 C 0.00 0.02 5.46 84.66 0.46 0.48 16 11 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 12 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 13 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 16 C 0.07 2.69 5.30 86.32 0.46 3.15 16 17 C -0.10 -3.10 5.67 30.65 0.17 -2.93 16 18 C 0.10 2.76 2.80 44.99 0.13 2.88 16 19 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 20 N -0.84 -17.38 9.24 -168.37 -1.56 -18.94 16 21 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.04 1.07 6.59 -2.38 -0.02 1.06 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.08 1.52 6.42 -2.38 -0.02 1.50 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 2.46 6.48 -2.39 -0.02 2.45 16 28 H 0.00 0.13 7.99 -2.39 -0.02 0.11 16 29 H -0.04 -2.48 8.12 -2.38 -0.02 -2.50 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.06 2.81 6.70 -2.39 -0.02 2.79 16 32 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.35 5.91 9.04 -89.70 -0.81 5.10 16 36 H 0.35 5.83 7.06 -89.69 -0.63 5.20 16 Total: -1.00 -65.53 278.95 -0.76 -66.29 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -0.39 Total: 11.12 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 3.06 Total: -19.24 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -5.46 Total: -105.34 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.53 -0.76 -66.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122838561.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.803 kcal (2) G-P(sol) polarization free energy of solvation -65.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds