Wall clock time and date at job start Mon Mar 30 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46736 * 2 1 4 4 N 1.46502 * 109.47330 * 179.97438 * 3 2 1 5 5 C 1.36942 * 119.99669 * 275.35805 * 4 3 2 6 6 H 1.07992 * 120.00398 * 37.81632 * 5 4 3 7 7 C 1.38816 * 119.99379 * 217.81882 * 5 4 3 8 8 N 1.31618 * 120.00493 * 20.92739 * 7 5 4 9 9 Si 1.86807 * 119.99625 * 200.92571 * 7 5 4 10 10 H 1.48499 * 109.47163 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46843 * 120.00199 * 9 7 5 12 12 H 1.48497 * 109.46905 * 239.99846 * 9 7 5 13 13 C 1.46499 * 120.00301 * 95.34900 * 4 3 2 14 14 C 1.53002 * 109.47115 * 270.00538 * 13 4 3 15 15 H 1.08999 * 110.42393 * 65.85755 * 14 13 4 16 16 C 1.54906 * 110.37337 * 188.17034 * 14 13 4 17 17 C 1.55137 * 101.65386 * 155.90161 * 16 14 13 18 18 C 1.54320 * 103.01937 * 324.34738 * 17 16 14 19 19 N 1.47447 * 107.23416 * 22.28059 * 18 17 16 20 20 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 21 21 H 1.08988 * 109.47523 * 300.00208 * 1 2 3 22 22 H 1.09006 * 109.47023 * 60.00026 * 1 2 3 23 23 H 1.08996 * 109.47317 * 240.00430 * 2 1 3 24 24 H 1.08992 * 109.47206 * 120.00051 * 2 1 3 25 25 H 1.09004 * 109.47140 * 60.00037 * 3 2 1 26 26 H 1.08997 * 109.47569 * 299.99593 * 3 2 1 27 27 H 0.97000 * 120.00039 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47128 * 150.00635 * 13 4 3 29 29 H 1.09002 * 109.46914 * 30.00220 * 13 4 3 30 30 H 1.08997 * 110.98983 * 37.80965 * 16 14 13 31 31 H 1.08998 * 110.99188 * 273.99317 * 16 14 13 32 32 H 1.08998 * 110.70654 * 205.96699 * 17 16 14 33 33 H 1.09000 * 110.70860 * 82.73013 * 17 16 14 34 34 H 1.09000 * 109.88743 * 262.87890 * 18 17 16 35 35 H 1.08996 * 110.02553 * 141.77019 * 18 17 16 36 36 H 1.00900 * 110.99418 * 123.25404 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1891 1.3322 1.1817 6 1 3.8190 0.6832 1.9615 7 6 5.3584 2.0545 1.3766 8 7 5.6000 3.1245 0.6492 9 14 6.5890 1.5079 2.6713 10 1 6.0861 0.2850 3.3473 11 1 7.8922 1.2141 2.0228 12 1 6.7673 2.5898 3.6727 13 6 4.2380 1.5608 -1.2622 14 6 4.4933 0.1657 -1.8362 15 1 3.5527 -0.3081 -2.1167 16 6 5.4401 0.2507 -3.0593 17 6 6.0538 -1.1739 -3.0802 18 6 6.1780 -1.5210 -1.5817 19 7 5.2180 -0.6698 -0.8551 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8898 22 1 -0.3633 0.5139 -0.8900 23 1 1.8934 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.6765 1.9564 0.8900 26 1 1.6767 1.9564 -0.8900 27 1 6.4173 3.6290 0.7851 28 1 5.1904 2.0603 -1.0842 29 1 3.6492 2.1431 -1.9710 30 1 6.2109 1.0057 -2.9046 31 1 4.8803 0.4482 -3.9735 32 1 7.0343 -1.1643 -3.5561 33 1 5.3867 -1.8736 -3.5838 34 1 7.1912 -1.3154 -1.2362 35 1 5.9377 -2.5719 -1.4207 36 1 4.5768 -1.2294 -0.3131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233036972.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:25 Heat of formation + Delta-G solvation = 11.375868 kcal Electronic energy + Delta-G solvation = -15181.974167 eV Core-core repulsion = 12894.154536 eV Total energy + Delta-G solvation = -2287.819631 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -37.98682 -35.59335 -32.76787 -30.72134 -29.43999 -28.90200 -25.39061 -24.68819 -21.84415 -20.59609 -19.96708 -19.14417 -16.54535 -16.07123 -14.81083 -14.47678 -14.25906 -13.70356 -13.12930 -12.87575 -12.75569 -12.37208 -11.60302 -11.43253 -11.37243 -11.13401 -10.93736 -10.81228 -10.65307 -10.58351 -10.46194 -10.17238 -10.11813 -9.78732 -9.60096 -9.36573 -8.20609 -7.41494 -6.31212 -5.53116 -3.10329 3.53205 3.60881 3.63564 4.69683 4.97633 5.21316 5.28608 5.50986 5.60425 5.67186 5.69286 5.79151 5.92641 5.97697 6.11911 6.15312 6.32691 6.33334 6.36077 6.45205 6.53907 6.61969 6.68678 6.77662 6.92262 6.95575 7.04021 7.24854 7.87894 7.93538 8.04294 8.33569 8.77331 9.43604 10.08132 10.63695 11.47361 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.015880 C = 0.010219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.962603 B = 1762.798798 C = 2739.386196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.146 3.854 4 N -0.580 5.580 5 C -0.231 4.231 6 H 0.052 0.948 7 C 0.023 3.977 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.299 1.299 13 C 0.160 3.840 14 C 0.065 3.935 15 H 0.026 0.974 16 C -0.125 4.125 17 C -0.142 4.142 18 C 0.045 3.955 19 N -0.644 5.644 20 H 0.040 0.960 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.030 0.970 27 H 0.249 0.751 28 H 0.101 0.899 29 H 0.019 0.981 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.173 -6.916 -5.947 9.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.019 3.981 4 N -0.299 5.299 5 C -0.361 4.361 6 H 0.069 0.931 7 C -0.176 4.176 8 N -0.539 5.539 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.226 1.226 13 C 0.033 3.967 14 C -0.047 4.047 15 H 0.044 0.956 16 C -0.164 4.164 17 C -0.180 4.180 18 C -0.084 4.084 19 N -0.274 5.274 20 H 0.059 0.941 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.118 0.882 29 H 0.037 0.963 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.571 -6.276 -5.725 8.876 hybrid contribution 0.166 -1.143 0.152 1.165 sum -2.405 -7.419 -5.573 9.586 Atomic orbital electron populations 1.21731 0.97598 1.00152 1.01005 1.22173 0.93522 1.01475 1.01022 1.20890 0.86183 0.92526 0.98473 1.43677 0.98690 1.84737 1.02798 1.18741 1.05236 1.18741 0.93394 0.93052 1.24951 1.00396 0.94537 0.97673 1.69984 1.25532 1.15603 1.42774 0.86346 0.82129 0.77768 0.80985 1.20487 1.21765 1.22638 1.20965 0.99667 0.90677 0.85427 1.23213 0.93027 0.98641 0.89804 0.95631 1.22728 0.99380 0.96367 0.97931 1.22760 1.00431 0.97525 0.97302 1.22619 0.98794 0.94935 0.92101 1.61631 1.19787 1.23053 1.22894 0.94054 0.93200 0.93556 0.93501 0.92505 0.94045 0.95205 0.94130 0.88155 0.96280 0.90749 0.92147 0.91838 0.92533 0.91866 0.94688 0.84872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.14 -2.56 6.23 -26.73 -0.17 -2.73 16 3 C 0.15 3.10 5.72 -4.04 -0.02 3.08 16 4 N -0.58 -14.23 2.35 -173.24 -0.41 -14.64 16 5 C -0.23 -6.28 8.66 -15.06 -0.13 -6.41 16 6 H 0.05 1.42 7.91 -52.49 -0.42 1.01 16 7 C 0.02 0.66 4.96 -17.43 -0.09 0.57 16 8 N -0.90 -26.30 11.46 55.49 0.64 -25.66 16 9 Si 0.90 22.66 29.60 -169.99 -5.03 17.63 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 13 C 0.16 3.75 5.15 -4.04 -0.02 3.73 16 14 C 0.06 1.29 3.57 -66.19 -0.24 1.05 16 15 H 0.03 0.50 6.91 -51.93 -0.36 0.14 16 16 C -0.13 -2.15 6.49 -24.60 -0.16 -2.30 16 17 C -0.14 -2.13 6.94 -24.91 -0.17 -2.31 16 18 C 0.05 0.77 7.58 -2.83 -0.02 0.75 16 19 N -0.64 -13.08 6.13 -103.84 -0.64 -13.72 16 20 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.72 8.14 -51.94 -0.42 0.29 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.85 6.91 -51.93 -0.36 0.49 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 26 H 0.03 0.61 7.83 -51.93 -0.41 0.20 16 27 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.10 2.73 5.43 -51.93 -0.28 2.45 16 29 H 0.02 0.43 7.86 -51.93 -0.41 0.02 16 30 H 0.07 1.38 7.99 -51.93 -0.42 0.96 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.34 6.77 8.91 -39.29 -0.35 6.42 16 LS Contribution 285.53 15.07 4.30 4.30 Total: -1.00 -28.79 285.53 -8.14 -36.94 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.35 Total: 1.53 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.65 Total: -6.38 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.41 Total: -54.03 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.03 Total: 17.63 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.79 -8.14 -36.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233036972.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.312 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds